EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000022688 (Gene tree)
Gene ID: 105014549
Gene Symbol: sub1
Alias: TCP4
Full Name: SUB1 homolog%2C transcriptional regulator
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 7389 bases
Position: chrLG13:26681413-26688801
Accession: 105014549
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000023817	PC4	PF02229.16	7.2e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000035091	-	3397	-	ENSELUP00000023817	129 (aa)	-	C1BXB6

Gene Model

Click here to download ENSELUG00000022688's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000022688's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000022688	sub1	100	73.485	ENSELUG00000005136	TCP4	100	66.923

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000022688	sub1	99	64.844	ENSAMXG00000038560	-	100	67.442	Astyanax_mexicanus
ENSELUG00000022688	sub1	100	51.538	ENSCPBG00000010898	-	73	52.747	Chrysemys_picta_bellii
ENSELUG00000022688	sub1	100	42.105	ENSCING00000017560	-	52	48.438	Ciona_intestinalis
ENSELUG00000022688	sub1	100	71.318	ENSCSEG00000009205	-	100	74.419	Cynoglossus_semilaevis
ENSELUG00000022688	sub1	100	67.442	ENSCSEG00000011154	-	100	71.318	Cynoglossus_semilaevis
ENSELUG00000022688	sub1	100	72.868	ENSCVAG00000021573	-	73	76.744	Cyprinodon_variegatus
ENSELUG00000022688	sub1	67	65.116	ENSDORG00000026076	-	100	60.000	Dipodomys_ordii
ENSELUG00000022688	sub1	72	38.947	FBgn0015299	Ssb-c31a	50	41.071	Drosophila_melanogaster
ENSELUG00000022688	sub1	100	72.868	ENSGMOG00000011659	-	100	74.419	Gadus_morhua
ENSELUG00000022688	sub1	100	75.194	ENSGAFG00000016251	-	100	78.295	Gambusia_affinis
ENSELUG00000022688	sub1	100	74.419	ENSKMAG00000013670	-	100	77.519	Kryptolebias_marmoratus
ENSELUG00000022688	sub1	99	78.906	ENSMMOG00000008698	-	100	75.969	Mola_mola
ENSELUG00000022688	sub1	75	68.041	ENSNGAG00000001935	-	65	67.391	Nannospalax_galili
ENSELUG00000022688	sub1	100	56.589	ENSODEG00000004776	-	77	65.217	Octodon_degus
ENSELUG00000022688	sub1	100	79.070	ENSONIG00000013958	-	100	80.620	Oreochromis_niloticus
ENSELUG00000022688	sub1	99	78.906	ENSORLG00000017237	sub1	100	78.295	Oryzias_latipes
ENSELUG00000022688	sub1	99	78.906	ENSORLG00020014865	sub1	100	78.295	Oryzias_latipes_hni
ENSELUG00000022688	sub1	99	78.906	ENSORLG00015005820	sub1	100	78.295	Oryzias_latipes_hsok
ENSELUG00000022688	sub1	99	74.219	ENSOMEG00000003351	-	100	79.070	Oryzias_melastigma
ENSELUG00000022688	sub1	99	82.812	ENSPMGG00000017654	-	100	79.845	Periophthalmus_magnuspinnatus
ENSELUG00000022688	sub1	100	75.194	ENSPFOG00000017101	-	100	78.295	Poecilia_formosa
ENSELUG00000022688	sub1	100	75.194	ENSPLAG00000015088	-	100	78.295	Poecilia_latipinna
ENSELUG00000022688	sub1	100	75.194	ENSPMEG00000023692	-	100	78.295	Poecilia_mexicana
ENSELUG00000022688	sub1	100	75.194	ENSPREG00000011918	-	100	78.295	Poecilia_reticulata
ENSELUG00000022688	sub1	100	74.419	ENSXCOG00000009356	-	100	77.519	Xiphophorus_couchianus
ENSELUG00000022688	sub1	100	74.419	ENSXMAG00000013353	-	100	77.519	Xiphophorus_maculatus