EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000022786 (Gene tree)
Gene ID: 105017073
Gene Symbol: rbck1
Alias: zgc:91964
Full Name: RANBP2-type and C3HC4-type zinc finger containing 1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 7308 bases
Position: chrLG17:13925250-13932557
Accession: 105017073
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000023974	zf-RanBP	PF00641.18	9.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000035290	-	4012	XM_010881389	ENSELUP00000023974	521 (aa)	XP_010879691	-

Gene Model

Click here to download ENSELUG00000022786's gene model file

Pathways

Pathway ID	Pathway Name	Source
els04217	Necroptosis	KEGG
els04621	NOD-like receptor signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000022786's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000022786	rbck1	98	46.765	ENSELUG00000016022	shrprbck1r	94	51.773

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000022786	rbck1	96	63.689	ENSACLG00000020380	rbck1	98	63.883	Astatotilapia_calliptera
ENSELUG00000022786	rbck1	96	66.536	ENSAMXG00000004941	rbck1	98	66.405	Astyanax_mexicanus
ENSELUG00000022786	rbck1	96	63.601	ENSCVAG00000002649	rbck1	98	64.971	Cyprinodon_variegatus
ENSELUG00000022786	rbck1	96	65.945	ENSFHEG00000016918	rbck1	98	66.337	Fundulus_heteroclitus
ENSELUG00000022786	rbck1	96	63.883	ENSHBUG00000008208	rbck1	98	64.078	Haplochromis_burtoni
ENSELUG00000022786	rbck1	96	63.883	ENSMZEG00005005317	rbck1	98	64.078	Maylandia_zebra
ENSELUG00000022786	rbck1	89	57.557	ENSNBRG00000006179	rbck1	99	57.764	Neolamprologus_brichardi
ENSELUG00000022786	rbck1	96	63.867	ENSONIG00000006803	rbck1	99	64.062	Oreochromis_niloticus
ENSELUG00000022786	rbck1	96	62.941	ENSPNYG00000012666	rbck1	99	63.511	Pundamilia_nyererei
ENSELUG00000022786	rbck1	98	62.949	ENSSDUG00000023631	rbck1	99	63.757	Seriola_dumerili
ENSELUG00000022786	rbck1	98	62.879	ENSSLDG00000008305	rbck1	99	63.878	Seriola_lalandi_dorsalis
ENSELUG00000022786	rbck1	97	64.436	ENSSPAG00000009432	rbck1	99	64.818	Stegastes_partitus