EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000022826 (Gene tree)
Gene ID: 105028790
Gene Symbol: -
Alias: -
Full Name: nucleolin
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Minus strand
Length: 14810 bases
Position: chrLG03:6193005-6207814
Accession: 105028790
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000023963	RRM_1	PF00076.22	8.7e-43	1	4
ENSELUP00000023963	RRM_1	PF00076.22	8.7e-43	2	4
ENSELUP00000023963	RRM_1	PF00076.22	8.7e-43	3	4
ENSELUP00000023963	RRM_1	PF00076.22	8.7e-43	4	4
ENSELUP00000023934	RRM_1	PF00076.22	9.2e-43	1	4
ENSELUP00000023934	RRM_1	PF00076.22	9.2e-43	2	4
ENSELUP00000023934	RRM_1	PF00076.22	9.2e-43	3	4
ENSELUP00000023934	RRM_1	PF00076.22	9.2e-43	4	4
ENSELUP00000041803	RRM_1	PF00076.22	1.3e-42	1	4
ENSELUP00000041803	RRM_1	PF00076.22	1.3e-42	2	4
ENSELUP00000041803	RRM_1	PF00076.22	1.3e-42	3	4
ENSELUP00000041803	RRM_1	PF00076.22	1.3e-42	4	4
ENSELUP00000041769	RRM_1	PF00076.22	1.9e-30	1	3
ENSELUP00000041769	RRM_1	PF00076.22	1.9e-30	2	3
ENSELUP00000041769	RRM_1	PF00076.22	1.9e-30	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000035276	-	3418	XM_013132421	ENSELUP00000041803	493 (aa)	XP_012987875	UPI000661C2ED
ENSELUT00000035224	-	1663	XM_020045362	ENSELUP00000041769	440 (aa)	XP_019900921	-
ENSELUT00000042907	-	1368	-	ENSELUP00000023934	455 (aa)	-	-
ENSELUT00000035269	-	3574	XM_010901767	ENSELUP00000023963	464 (aa)	XP_010900069	UPI0005769CAB

Gene Model

Click here to download ENSELUG00000022826's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000022826's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000022826	-	75	30.303	ENSELUG00000001811	pabpc1l	60	30.303
ENSELUG00000022826	-	80	50.398	ENSELUG00000006033	ncl	63	47.991

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000022826	-	87	50.743	ENSAPOG00000023888	ncl	67	50.000	Acanthochromis_polyacanthus
ENSELUG00000022826	-	88	45.688	ENSAPOG00000014534	-	67	46.851	Acanthochromis_polyacanthus
ENSELUG00000022826	-	82	49.608	ENSACIG00000013234	ncl	69	48.095	Amphilophus_citrinellus
ENSELUG00000022826	-	90	45.327	ENSAOCG00000014792	-	64	46.420	Amphiprion_ocellaris
ENSELUG00000022826	-	80	52.815	ENSAOCG00000003133	ncl	66	48.401	Amphiprion_ocellaris
ENSELUG00000022826	-	90	45.327	ENSAPEG00000013612	-	63	46.420	Amphiprion_percula
ENSELUG00000022826	-	80	52.815	ENSAPEG00000002769	ncl	65	48.283	Amphiprion_percula
ENSELUG00000022826	-	80	51.475	ENSATEG00000013343	ncl	61	49.176	Anabas_testudineus
ENSELUG00000022826	-	91	49.772	ENSATEG00000019862	-	83	51.358	Anabas_testudineus
ENSELUG00000022826	-	82	48.042	ENSAPLG00000012897	-	69	47.716	Anas_platyrhynchos
ENSELUG00000022826	-	83	46.392	ENSACAG00000001006	-	56	45.477	Anolis_carolinensis
ENSELUG00000022826	-	83	48.424	ENSACLG00000026031	ncl	94	49.575	Astatotilapia_calliptera
ENSELUG00000022826	-	80	47.507	ENSAMXG00000001647	ncl	82	49.671	Astyanax_mexicanus
ENSELUG00000022826	-	69	43.805	ENSCHIG00000003401	-	52	44.000	Capra_hircus
ENSELUG00000022826	-	75	38.663	ENSCHIG00000012665	-	60	36.792	Capra_hircus
ENSELUG00000022826	-	81	48.052	ENSCPBG00000016444	-	57	47.692	Chrysemys_picta_bellii
ENSELUG00000022826	-	84	48.547	ENSCSEG00000015089	ncl	64	47.418	Cynoglossus_semilaevis
ENSELUG00000022826	-	80	48.649	ENSCVAG00000012600	ncl	58	47.549	Cyprinodon_variegatus
ENSELUG00000022826	-	80	50.798	ENSDARG00000002710	ncl	92	47.922	Danio_rerio
ENSELUG00000022826	-	76	38.873	ENSDNOG00000040257	-	72	36.364	Dasypus_novemcinctus
ENSELUG00000022826	-	75	39.118	ENSDNOG00000031611	-	72	39.601	Dasypus_novemcinctus
ENSELUG00000022826	-	81	47.927	ENSFALG00000007592	-	63	45.227	Ficedula_albicollis
ENSELUG00000022826	-	80	49.866	ENSFHEG00000018000	ncl	70	46.944	Fundulus_heteroclitus
ENSELUG00000022826	-	81	44.562	ENSGMOG00000001341	ncl	67	42.790	Gadus_morhua
ENSELUG00000022826	-	86	47.932	ENSGALG00000032930	NCL	62	46.083	Gallus_gallus
ENSELUG00000022826	-	80	47.989	ENSGAFG00000015375	ncl	65	43.867	Gambusia_affinis
ENSELUG00000022826	-	81	47.606	ENSGACG00000008970	ncl	62	47.895	Gasterosteus_aculeatus
ENSELUG00000022826	-	81	47.917	ENSGAGG00000013330	-	57	47.179	Gopherus_agassizii
ENSELUG00000022826	-	81	50.532	ENSHBUG00000006869	ncl	61	48.478	Haplochromis_burtoni
ENSELUG00000022826	-	80	51.872	ENSHCOG00000010234	ncl	55	51.134	Hippocampus_comes
ENSELUG00000022826	-	66	52.117	ENSIPUG00000024556	ncl	79	52.396	Ictalurus_punctatus
ENSELUG00000022826	-	80	51.743	ENSKMAG00000008111	ncl	66	47.414	Kryptolebias_marmoratus
ENSELUG00000022826	-	84	46.851	ENSLBEG00000014278	-	84	48.907	Labrus_bergylta
ENSELUG00000022826	-	88	48.219	ENSLBEG00000007915	-	66	50.000	Labrus_bergylta
ENSELUG00000022826	-	81	50.133	ENSLBEG00000019073	ncl	63	48.122	Labrus_bergylta
ENSELUG00000022826	-	84	48.969	ENSLACG00000009328	ncl	60	50.754	Latimeria_chalumnae
ENSELUG00000022826	-	80	46.237	ENSLACG00000022167	-	83	45.038	Latimeria_chalumnae
ENSELUG00000022826	-	77	48.753	ENSLOCG00000004828	ncl	58	46.404	Lepisosteus_oculatus
ENSELUG00000022826	-	89	47.086	ENSMAMG00000003479	-	77	46.622	Mastacembelus_armatus
ENSELUG00000022826	-	80	52.291	ENSMAMG00000002086	ncl	51	50.119	Mastacembelus_armatus
ENSELUG00000022826	-	81	50.532	ENSMZEG00005017438	ncl	58	48.403	Maylandia_zebra
ENSELUG00000022826	-	77	49.036	ENSMGAG00000008147	-	85	48.794	Meleagris_gallopavo
ENSELUG00000022826	-	75	50.649	ENSMMOG00000008553	ncl	95	50.000	Mola_mola
ENSELUG00000022826	-	81	46.736	ENSMODG00000002470	-	64	44.934	Monodelphis_domestica
ENSELUG00000022826	-	84	50.144	ENSMALG00000014827	ncl	59	46.717	Monopterus_albus
ENSELUG00000022826	-	67	36.129	ENSMPUG00000001663	-	59	35.913	Mustela_putorius_furo
ENSELUG00000022826	-	75	50.704	ENSNBRG00000001232	ncl	82	50.508	Neolamprologus_brichardi
ENSELUG00000022826	-	75	50.704	ENSNBRG00000000146	-	86	50.508	Neolamprologus_brichardi
ENSELUG00000022826	-	81	45.789	ENSMEUG00000012335	-	67	43.636	Notamacropus_eugenii
ENSELUG00000022826	-	80	43.164	ENSONIG00000010631	-	96	43.280	Oreochromis_niloticus
ENSELUG00000022826	-	81	50.532	ENSONIG00000012508	ncl	60	48.131	Oreochromis_niloticus
ENSELUG00000022826	-	83	46.803	ENSOANG00000008732	-	68	44.828	Ornithorhynchus_anatinus
ENSELUG00000022826	-	78	50.413	ENSORLG00000007055	ncl	58	46.948	Oryzias_latipes
ENSELUG00000022826	-	87	38.824	ENSORLG00000004645	-	87	40.000	Oryzias_latipes
ENSELUG00000022826	-	80	50.269	ENSORLG00020017943	ncl	58	46.948	Oryzias_latipes_hni
ENSELUG00000022826	-	81	40.665	ENSORLG00020003497	-	75	40.816	Oryzias_latipes_hni
ENSELUG00000022826	-	84	40.099	ENSORLG00015006613	-	81	40.000	Oryzias_latipes_hsok
ENSELUG00000022826	-	80	48.925	ENSORLG00015013815	ncl	88	50.000	Oryzias_latipes_hsok
ENSELUG00000022826	-	80	49.330	ENSOMEG00000020786	ncl	56	47.143	Oryzias_melastigma
ENSELUG00000022826	-	80	40.104	ENSOMEG00000015864	-	82	40.209	Oryzias_melastigma
ENSELUG00000022826	-	81	52.128	ENSPKIG00000002604	ncl	60	48.956	Paramormyrops_kingsleyae
ENSELUG00000022826	-	81	48.062	ENSPSIG00000002361	-	55	47.959	Pelodiscus_sinensis
ENSELUG00000022826	-	83	49.866	ENSPMGG00000004709	ncl	82	49.843	Periophthalmus_magnuspinnatus
ENSELUG00000022826	-	81	46.770	ENSPCIG00000003293	-	66	44.295	Phascolarctos_cinereus
ENSELUG00000022826	-	80	48.257	ENSPFOG00000024205	ncl	58	46.604	Poecilia_formosa
ENSELUG00000022826	-	80	47.721	ENSPLAG00000024026	ncl	58	45.991	Poecilia_latipinna
ENSELUG00000022826	-	80	48.257	ENSPMEG00000006000	ncl	57	46.226	Poecilia_mexicana
ENSELUG00000022826	-	86	48.250	ENSPNYG00000020494	ncl	58	48.522	Pundamilia_nyererei
ENSELUG00000022826	-	80	51.604	ENSPNAG00000006192	ncl	56	49.755	Pygocentrus_nattereri
ENSELUG00000022826	-	81	43.717	ENSSHAG00000002702	-	77	42.417	Sarcophilus_harrisii
ENSELUG00000022826	-	83	42.105	ENSSHAG00000007489	-	53	41.197	Sarcophilus_harrisii
ENSELUG00000022826	-	81	53.723	ENSSFOG00015008583	ncl	66	48.526	Scleropages_formosus
ENSELUG00000022826	-	66	40.645	ENSSFOG00015013153	-	76	42.727	Scleropages_formosus
ENSELUG00000022826	-	81	53.230	ENSSMAG00000007582	-	62	53.230	Scophthalmus_maximus
ENSELUG00000022826	-	80	47.594	ENSSMAG00000021241	ncl	61	45.412	Scophthalmus_maximus
ENSELUG00000022826	-	80	50.402	ENSSDUG00000006128	ncl	87	50.000	Seriola_dumerili
ENSELUG00000022826	-	81	50.249	ENSSDUG00000010922	-	79	47.742	Seriola_dumerili
ENSELUG00000022826	-	80	49.866	ENSSLDG00000002012	ncl	60	48.113	Seriola_lalandi_dorsalis
ENSELUG00000022826	-	81	50.000	ENSSLDG00000015784	-	68	49.876	Seriola_lalandi_dorsalis
ENSELUG00000022826	-	81	46.482	ENSSPUG00000008244	-	67	43.764	Sphenodon_punctatus
ENSELUG00000022826	-	78	52.465	ENSSPAG00000002637	ncl	82	52.041	Stegastes_partitus
ENSELUG00000022826	-	91	46.778	ENSSPAG00000001859	-	66	45.775	Stegastes_partitus
ENSELUG00000022826	-	82	47.520	ENSTGUG00000009782	-	65	46.602	Taeniopygia_guttata
ENSELUG00000022826	-	78	48.895	ENSTRUG00000008185	ncl	62	46.462	Takifugu_rubripes
ENSELUG00000022826	-	78	50.411	ENSTNIG00000012186	ncl	62	50.789	Tetraodon_nigroviridis
ENSELUG00000022826	-	82	46.736	ENSXETG00000009517	ncl	54	46.803	Xenopus_tropicalis
ENSELUG00000022826	-	80	41.019	ENSXCOG00000003524	ncl	94	39.368	Xiphophorus_couchianus
ENSELUG00000022826	-	80	45.526	ENSXCOG00000007369	-	89	45.526	Xiphophorus_couchianus
ENSELUG00000022826	-	80	49.330	ENSXMAG00000005914	ncl	61	46.563	Xiphophorus_maculatus