EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSELUG00000023374 (Gene tree)
Gene ID: 105015299
Gene Symbol: lsm1 (1 of many)
Alias: zgc:101136
Full Name: U6 snRNA-associated Sm-like protein LSm1
Gene Type: protein_coding
Species: Esox_lucius
Status: putative
Strand: Plus strand
Length: 2646 bases
Position: chrLG14:24525950-24528595
Accession: 105015299
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSELUP00000024621	LSM	PF01423.22	3.1e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSELUT00000036111	-	1586	XM_010878347	ENSELUP00000024621	133 (aa)	XP_010876649	UPI000576EB6F

Gene Model

Click here to download ENSELUG00000023374's gene model file

Pathways

Pathway ID	Pathway Name	Source
els03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSELUG00000023374's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSELUG00000023374	lsm1	60	33.333	ENSELUG00000010138	lsm8	84	33.333
ENSELUG00000023374	lsm1	100	80.451	ENSELUG00000002322	lsm1	100	80.451

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSELUG00000023374	lsm1	100	84.211	ENSG00000175324	LSM1	89	97.436	Homo_sapiens
ENSELUG00000023374	lsm1	100	78.947	ENSAPOG00000010833	lsm1	100	78.947	Acanthochromis_polyacanthus
ENSELUG00000023374	lsm1	100	84.211	ENSAMEG00000011141	LSM1	100	84.211	Ailuropoda_melanoleuca
ENSELUG00000023374	lsm1	58	90.909	ENSACIG00000019593	lsm1	64	90.909	Amphilophus_citrinellus
ENSELUG00000023374	lsm1	100	78.947	ENSAOCG00000017997	-	100	78.947	Amphiprion_ocellaris
ENSELUG00000023374	lsm1	100	78.947	ENSAOCG00000017096	lsm1	100	78.947	Amphiprion_ocellaris
ENSELUG00000023374	lsm1	100	78.947	ENSAPEG00000011669	lsm1	100	78.947	Amphiprion_percula
ENSELUG00000023374	lsm1	100	77.444	ENSATEG00000022266	lsm1	100	77.444	Anabas_testudineus
ENSELUG00000023374	lsm1	100	84.211	ENSANAG00000027785	LSM1	89	97.436	Aotus_nancymaae
ENSELUG00000023374	lsm1	100	77.444	ENSACLG00000011400	lsm1	100	77.444	Astatotilapia_calliptera
ENSELUG00000023374	lsm1	100	75.940	ENSAMXG00000005441	lsm1	100	75.940	Astyanax_mexicanus
ENSELUG00000023374	lsm1	100	83.459	ENSBTAG00000001612	LSM1	100	83.459	Bos_taurus
ENSELUG00000023374	lsm1	70	56.989	WBGene00003076	lsm-1	73	56.989	Caenorhabditis_elegans
ENSELUG00000023374	lsm1	100	83.459	ENSCJAG00000048015	LSM1	89	97.436	Callithrix_jacchus
ENSELUG00000023374	lsm1	100	84.211	ENSCAFG00000006113	LSM1	100	84.211	Canis_familiaris
ENSELUG00000023374	lsm1	100	84.211	ENSCAFG00020001822	LSM1	100	84.211	Canis_lupus_dingo
ENSELUG00000023374	lsm1	100	84.211	ENSCHIG00000013194	LSM1	100	84.211	Capra_hircus
ENSELUG00000023374	lsm1	100	84.211	ENSTSYG00000010394	LSM1	89	97.436	Carlito_syrichta
ENSELUG00000023374	lsm1	100	84.211	ENSCPOG00000032671	LSM1	100	84.211	Cavia_porcellus
ENSELUG00000023374	lsm1	100	84.211	ENSCCAG00000037171	LSM1	89	97.436	Cebus_capucinus
ENSELUG00000023374	lsm1	100	84.211	ENSCATG00000020377	LSM1	89	97.436	Cercocebus_atys
ENSELUG00000023374	lsm1	100	84.211	ENSCLAG00000001137	LSM1	100	84.211	Chinchilla_lanigera
ENSELUG00000023374	lsm1	100	84.211	ENSCSAG00000015485	LSM1	100	84.211	Chlorocebus_sabaeus
ENSELUG00000023374	lsm1	100	84.211	ENSCHOG00000006030	LSM1	100	84.211	Choloepus_hoffmanni
ENSELUG00000023374	lsm1	95	74.016	ENSCPBG00000006569	LSM1	86	74.016	Chrysemys_picta_bellii
ENSELUG00000023374	lsm1	99	65.152	ENSCING00000013536	-	99	65.152	Ciona_intestinalis
ENSELUG00000023374	lsm1	100	84.211	ENSCANG00000019173	LSM1	89	97.436	Colobus_angolensis_palliatus
ENSELUG00000023374	lsm1	100	84.962	ENSCGRG00001024560	-	100	84.962	Cricetulus_griseus_chok1gshd
ENSELUG00000023374	lsm1	80	75.000	ENSCGRG00001002259	-	97	75.000	Cricetulus_griseus_chok1gshd
ENSELUG00000023374	lsm1	80	75.000	ENSCGRG00000013603	-	97	75.000	Cricetulus_griseus_crigri
ENSELUG00000023374	lsm1	100	84.962	ENSCGRG00000006554	-	100	84.962	Cricetulus_griseus_crigri
ENSELUG00000023374	lsm1	100	77.444	ENSCSEG00000010570	lsm1	92	77.444	Cynoglossus_semilaevis
ENSELUG00000023374	lsm1	100	76.692	ENSCSEG00000008319	lsm1	92	76.692	Cynoglossus_semilaevis
ENSELUG00000023374	lsm1	100	76.692	ENSCVAG00000003871	lsm1	100	76.692	Cyprinodon_variegatus
ENSELUG00000023374	lsm1	100	75.188	ENSDARG00000043177	lsm1	100	75.188	Danio_rerio
ENSELUG00000023374	lsm1	100	83.459	ENSDNOG00000032911	-	100	83.459	Dasypus_novemcinctus
ENSELUG00000023374	lsm1	89	68.067	ENSDNOG00000046620	-	100	68.067	Dasypus_novemcinctus
ENSELUG00000023374	lsm1	100	84.211	ENSDNOG00000046387	-	100	84.211	Dasypus_novemcinctus
ENSELUG00000023374	lsm1	99	79.545	ENSDNOG00000030989	-	99	79.545	Dasypus_novemcinctus
ENSELUG00000023374	lsm1	100	84.211	ENSDORG00000028172	Lsm1	100	84.211	Dipodomys_ordii
ENSELUG00000023374	lsm1	100	59.398	FBgn0261067	LSm1	97	59.398	Drosophila_melanogaster
ENSELUG00000023374	lsm1	100	84.962	ENSEASG00005016677	LSM1	100	84.962	Equus_asinus_asinus
ENSELUG00000023374	lsm1	100	84.962	ENSECAG00000010461	LSM1	100	84.962	Equus_caballus
ENSELUG00000023374	lsm1	72	81.250	ENSEEUG00000015181	LSM1	97	81.250	Erinaceus_europaeus
ENSELUG00000023374	lsm1	100	84.211	ENSFCAG00000039335	LSM1	89	97.436	Felis_catus
ENSELUG00000023374	lsm1	89	79.661	ENSFALG00000006723	LSM1	100	79.661	Ficedula_albicollis
ENSELUG00000023374	lsm1	100	84.211	ENSFDAG00000007658	LSM1	100	84.211	Fukomys_damarensis
ENSELUG00000023374	lsm1	100	76.692	ENSFHEG00000009556	lsm1	100	76.692	Fundulus_heteroclitus
ENSELUG00000023374	lsm1	100	76.692	ENSGMOG00000016651	lsm1	98	76.692	Gadus_morhua
ENSELUG00000023374	lsm1	100	81.955	ENSGALG00000003245	LSM1	100	81.955	Gallus_gallus
ENSELUG00000023374	lsm1	100	76.692	ENSGAFG00000011355	lsm1	100	76.692	Gambusia_affinis
ENSELUG00000023374	lsm1	100	77.444	ENSGACG00000011763	lsm1	98	77.444	Gasterosteus_aculeatus
ENSELUG00000023374	lsm1	100	81.203	ENSGAGG00000024065	LSM1	100	81.203	Gopherus_agassizii
ENSELUG00000023374	lsm1	100	84.211	ENSGGOG00000022658	LSM1	89	97.436	Gorilla_gorilla
ENSELUG00000023374	lsm1	100	77.444	ENSHBUG00000010897	lsm1	100	77.444	Haplochromis_burtoni
ENSELUG00000023374	lsm1	100	84.211	ENSHGLG00000005711	LSM1	100	84.211	Heterocephalus_glaber_female
ENSELUG00000023374	lsm1	100	66.917	ENSHGLG00000017574	-	100	66.917	Heterocephalus_glaber_female
ENSELUG00000023374	lsm1	100	84.211	ENSHGLG00100017660	LSM1	100	84.211	Heterocephalus_glaber_male
ENSELUG00000023374	lsm1	100	66.917	ENSHGLG00100012152	-	100	66.917	Heterocephalus_glaber_male
ENSELUG00000023374	lsm1	100	76.692	ENSHCOG00000017233	lsm1	100	76.692	Hippocampus_comes
ENSELUG00000023374	lsm1	100	75.188	ENSIPUG00000002312	LSM1	100	75.188	Ictalurus_punctatus
ENSELUG00000023374	lsm1	58	96.104	ENSSTOG00000026870	LSM1	94	96.104	Ictidomys_tridecemlineatus
ENSELUG00000023374	lsm1	100	84.211	ENSJJAG00000014605	-	100	84.211	Jaculus_jaculus
ENSELUG00000023374	lsm1	100	77.444	ENSKMAG00000003016	lsm1	100	77.444	Kryptolebias_marmoratus
ENSELUG00000023374	lsm1	100	77.444	ENSLBEG00000022352	lsm1	100	77.444	Labrus_bergylta
ENSELUG00000023374	lsm1	89	79.661	ENSLACG00000010947	LSM1	98	79.661	Latimeria_chalumnae
ENSELUG00000023374	lsm1	100	82.707	ENSLOCG00000015149	lsm1	100	82.707	Lepisosteus_oculatus
ENSELUG00000023374	lsm1	100	84.211	ENSLAFG00000003534	LSM1	100	84.211	Loxodonta_africana
ENSELUG00000023374	lsm1	100	84.211	ENSMFAG00000032661	LSM1	89	97.436	Macaca_fascicularis
ENSELUG00000023374	lsm1	100	84.211	ENSMLEG00000034535	LSM1	89	97.436	Mandrillus_leucophaeus
ENSELUG00000023374	lsm1	100	77.444	ENSMAMG00000007464	lsm1	100	77.444	Mastacembelus_armatus
ENSELUG00000023374	lsm1	100	77.444	ENSMZEG00005010321	lsm1	100	77.444	Maylandia_zebra
ENSELUG00000023374	lsm1	100	81.203	ENSMGAG00000002125	LSM1	100	81.203	Meleagris_gallopavo
ENSELUG00000023374	lsm1	100	84.211	ENSMICG00000030726	LSM1	89	97.436	Microcebus_murinus
ENSELUG00000023374	lsm1	100	84.962	ENSMOCG00000022817	Lsm1	100	84.962	Microtus_ochrogaster
ENSELUG00000023374	lsm1	100	78.195	ENSMMOG00000015466	lsm1	100	78.195	Mola_mola
ENSELUG00000023374	lsm1	100	83.459	ENSMODG00000010732	-	100	83.459	Monodelphis_domestica
ENSELUG00000023374	lsm1	58	90.909	ENSMALG00000001478	lsm1	82	90.909	Monopterus_albus
ENSELUG00000023374	lsm1	100	84.962	MGP_CAROLIEiJ_G0030930	Lsm1	100	84.962	Mus_caroli
ENSELUG00000023374	lsm1	100	84.962	ENSMUSG00000037296	Lsm1	91	97.436	Mus_musculus
ENSELUG00000023374	lsm1	100	84.962	MGP_PahariEiJ_G0021400	Lsm1	100	84.962	Mus_pahari
ENSELUG00000023374	lsm1	100	84.962	MGP_SPRETEiJ_G0032049	Lsm1	100	84.962	Mus_spretus
ENSELUG00000023374	lsm1	100	83.459	ENSMPUG00000009883	LSM1	100	83.459	Mustela_putorius_furo
ENSELUG00000023374	lsm1	100	83.459	ENSMLUG00000003734	LSM1	100	83.459	Myotis_lucifugus
ENSELUG00000023374	lsm1	100	83.459	ENSNGAG00000003753	Lsm1	100	83.459	Nannospalax_galili
ENSELUG00000023374	lsm1	58	90.909	ENSNBRG00000017370	lsm1	66	90.909	Neolamprologus_brichardi
ENSELUG00000023374	lsm1	100	84.211	ENSNLEG00000029390	LSM1	89	97.436	Nomascus_leucogenys
ENSELUG00000023374	lsm1	100	83.459	ENSMEUG00000014077	LSM1	100	83.459	Notamacropus_eugenii
ENSELUG00000023374	lsm1	88	81.197	ENSOPRG00000000333	LSM1	100	81.197	Ochotona_princeps
ENSELUG00000023374	lsm1	100	84.211	ENSODEG00000004834	LSM1	100	84.211	Octodon_degus
ENSELUG00000023374	lsm1	100	77.444	ENSONIG00000010782	lsm1	100	77.444	Oreochromis_niloticus
ENSELUG00000023374	lsm1	100	83.459	ENSOANG00000003256	LSM1	100	83.459	Ornithorhynchus_anatinus
ENSELUG00000023374	lsm1	100	84.211	ENSOCUG00000015399	LSM1	100	84.211	Oryctolagus_cuniculus
ENSELUG00000023374	lsm1	100	78.947	ENSORLG00000030288	lsm1	100	78.947	Oryzias_latipes
ENSELUG00000023374	lsm1	100	78.947	ENSORLG00020003941	lsm1	100	78.947	Oryzias_latipes_hni
ENSELUG00000023374	lsm1	100	77.444	ENSORLG00020006213	-	86	77.444	Oryzias_latipes_hni
ENSELUG00000023374	lsm1	100	78.947	ENSORLG00015018350	lsm1	100	78.947	Oryzias_latipes_hsok
ENSELUG00000023374	lsm1	100	78.195	ENSOMEG00000012454	lsm1	100	78.195	Oryzias_melastigma
ENSELUG00000023374	lsm1	100	84.211	ENSOGAG00000015161	LSM1	100	84.211	Otolemur_garnettii
ENSELUG00000023374	lsm1	100	84.211	ENSOARG00000001317	LSM1	100	84.211	Ovis_aries
ENSELUG00000023374	lsm1	100	84.211	ENSPPAG00000032279	LSM1	89	97.436	Pan_paniscus
ENSELUG00000023374	lsm1	100	84.211	ENSPPRG00000014172	-	89	97.436	Panthera_pardus
ENSELUG00000023374	lsm1	100	84.211	ENSPTIG00000010289	LSM1	89	97.436	Panthera_tigris_altaica
ENSELUG00000023374	lsm1	100	84.211	ENSPTRG00000020169	LSM1	89	97.436	Pan_troglodytes
ENSELUG00000023374	lsm1	100	84.211	ENSPANG00000008814	LSM1	89	97.436	Papio_anubis
ENSELUG00000023374	lsm1	100	84.962	ENSPKIG00000001839	lsm1	100	84.962	Paramormyrops_kingsleyae
ENSELUG00000023374	lsm1	100	77.444	ENSPKIG00000019409	LSM1	99	77.444	Paramormyrops_kingsleyae
ENSELUG00000023374	lsm1	97	75.194	ENSPSIG00000012563	LSM1	98	75.194	Pelodiscus_sinensis
ENSELUG00000023374	lsm1	58	90.909	ENSPMGG00000022999	lsm1	73	90.909	Periophthalmus_magnuspinnatus
ENSELUG00000023374	lsm1	85	76.106	ENSPMAG00000002671	lsm1	100	76.106	Petromyzon_marinus
ENSELUG00000023374	lsm1	100	83.459	ENSPCIG00000008880	LSM1	100	83.459	Phascolarctos_cinereus
ENSELUG00000023374	lsm1	100	76.692	ENSPFOG00000016029	lsm1	100	76.692	Poecilia_formosa
ENSELUG00000023374	lsm1	100	76.692	ENSPLAG00000007879	lsm1	100	76.692	Poecilia_latipinna
ENSELUG00000023374	lsm1	100	76.692	ENSPMEG00000023550	lsm1	100	76.692	Poecilia_mexicana
ENSELUG00000023374	lsm1	100	76.692	ENSPREG00000009574	lsm1	100	76.692	Poecilia_reticulata
ENSELUG00000023374	lsm1	100	84.211	ENSPPYG00000018521	LSM1	100	84.211	Pongo_abelii
ENSELUG00000023374	lsm1	100	84.211	ENSPCOG00000020901	-	89	97.436	Propithecus_coquereli
ENSELUG00000023374	lsm1	100	84.211	ENSPVAG00000006016	LSM1	100	84.211	Pteropus_vampyrus
ENSELUG00000023374	lsm1	100	77.444	ENSPNYG00000018067	lsm1	100	77.444	Pundamilia_nyererei
ENSELUG00000023374	lsm1	100	75.188	ENSPNAG00000013707	lsm1	100	75.188	Pygocentrus_nattereri
ENSELUG00000023374	lsm1	100	83.459	ENSRNOG00000015375	Lsm1	100	83.459	Rattus_norvegicus
ENSELUG00000023374	lsm1	100	84.211	ENSRBIG00000027449	LSM1	89	97.436	Rhinopithecus_bieti
ENSELUG00000023374	lsm1	100	84.211	ENSRROG00000036074	LSM1	89	97.436	Rhinopithecus_roxellana
ENSELUG00000023374	lsm1	81	41.525	YJL124C	LSM1	69	41.525	Saccharomyces_cerevisiae
ENSELUG00000023374	lsm1	100	83.459	ENSSHAG00000017260	LSM1	100	83.459	Sarcophilus_harrisii
ENSELUG00000023374	lsm1	100	85.714	ENSSFOG00015019528	lsm1	100	85.714	Scleropages_formosus
ENSELUG00000023374	lsm1	100	77.444	ENSSMAG00000004930	lsm1	100	77.444	Scophthalmus_maximus
ENSELUG00000023374	lsm1	100	76.692	ENSSDUG00000021823	lsm1	100	76.692	Seriola_dumerili
ENSELUG00000023374	lsm1	100	76.692	ENSSLDG00000012154	lsm1	100	76.692	Seriola_lalandi_dorsalis
ENSELUG00000023374	lsm1	100	81.203	ENSSPUG00000014878	LSM1	100	81.203	Sphenodon_punctatus
ENSELUG00000023374	lsm1	100	78.195	ENSSPAG00000020548	lsm1	100	78.195	Stegastes_partitus
ENSELUG00000023374	lsm1	100	84.211	ENSSSCG00000039058	LSM1	100	84.211	Sus_scrofa
ENSELUG00000023374	lsm1	100	81.203	ENSTGUG00000004793	LSM1	100	81.203	Taeniopygia_guttata
ENSELUG00000023374	lsm1	100	77.444	ENSTRUG00000025239	lsm1	100	77.444	Takifugu_rubripes
ENSELUG00000023374	lsm1	100	77.444	ENSTNIG00000004055	lsm1	100	77.444	Tetraodon_nigroviridis
ENSELUG00000023374	lsm1	88	82.051	ENSTBEG00000015884	LSM1	100	82.051	Tupaia_belangeri
ENSELUG00000023374	lsm1	100	84.211	ENSTTRG00000004482	LSM1	100	84.211	Tursiops_truncatus
ENSELUG00000023374	lsm1	100	84.211	ENSUAMG00000004103	LSM1	100	84.211	Ursus_americanus
ENSELUG00000023374	lsm1	100	84.211	ENSUMAG00000009132	LSM1	100	84.211	Ursus_maritimus
ENSELUG00000023374	lsm1	58	94.805	ENSVPAG00000011593	LSM1	100	94.805	Vicugna_pacos
ENSELUG00000023374	lsm1	100	84.211	ENSVVUG00000020191	LSM1	100	84.211	Vulpes_vulpes
ENSELUG00000023374	lsm1	61	69.136	ENSVVUG00000014880	-	86	69.136	Vulpes_vulpes
ENSELUG00000023374	lsm1	100	78.832	ENSXETG00000009004	lsm1	100	78.832	Xenopus_tropicalis
ENSELUG00000023374	lsm1	100	76.692	ENSXCOG00000015631	lsm1	100	76.692	Xiphophorus_couchianus
ENSELUG00000023374	lsm1	100	76.692	ENSXMAG00000026637	lsm1	100	76.692	Xiphophorus_maculatus