EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSETEG00000003978 (Gene tree)
Gene ID: -
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Echinops_telfairi
Status: putative
Strand: Minus strand
Length: 110990 bases
Position: chrGeneScaffold_2403:6149-117138
Accession: 30654
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSETEP00000003267	XRN_N	PF03159.18	1.9e-76	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSETET00000003983	XRN1-201	5046	-	ENSETEP00000003267	1681 (aa)	-	UPI0000E40FD4

Gene Model

Click here to download ENSETEG00000003978's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSETEG00000003978's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSETEG00000003978	XRN1	88	99.194	ENSG00000114127	XRN1	86	100.000	Homo_sapiens
ENSETEG00000003978	XRN1	88	66.942	ENSAPOG00000000622	xrn1	85	68.468	Acanthochromis_polyacanthus
ENSETEG00000003978	XRN1	88	96.850	ENSAMEG00000012538	XRN1	86	97.368	Ailuropoda_melanoleuca
ENSETEG00000003978	XRN1	88	70.248	ENSACIG00000001057	xrn1	85	70.270	Amphilophus_citrinellus
ENSETEG00000003978	XRN1	88	68.595	ENSAOCG00000014097	xrn1	86	70.270	Amphiprion_ocellaris
ENSETEG00000003978	XRN1	88	68.595	ENSAPEG00000006620	xrn1	86	70.270	Amphiprion_percula
ENSETEG00000003978	XRN1	82	68.595	ENSATEG00000009752	xrn1	84	68.468	Anabas_testudineus
ENSETEG00000003978	XRN1	88	91.935	ENSAPLG00000004905	XRN1	87	90.991	Anas_platyrhynchos
ENSETEG00000003978	XRN1	88	91.870	ENSACAG00000004985	XRN1	86	90.909	Anolis_carolinensis
ENSETEG00000003978	XRN1	88	99.194	ENSANAG00000029013	XRN1	86	100.000	Aotus_nancymaae
ENSETEG00000003978	XRN1	88	71.074	ENSACLG00000004806	xrn1	86	71.171	Astatotilapia_calliptera
ENSETEG00000003978	XRN1	88	74.380	ENSAMXG00000019370	xrn1	72	93.590	Astyanax_mexicanus
ENSETEG00000003978	XRN1	88	99.194	ENSBTAG00000011524	XRN1	86	99.099	Bos_taurus
ENSETEG00000003978	XRN1	88	99.194	ENSCJAG00000001872	XRN1	86	100.000	Callithrix_jacchus
ENSETEG00000003978	XRN1	88	99.194	ENSCAFG00000007783	XRN1	86	100.000	Canis_familiaris
ENSETEG00000003978	XRN1	88	99.194	ENSCAFG00020009120	XRN1	86	100.000	Canis_lupus_dingo
ENSETEG00000003978	XRN1	88	99.194	ENSCHIG00000019192	XRN1	86	99.099	Capra_hircus
ENSETEG00000003978	XRN1	88	99.194	ENSTSYG00000002705	XRN1	86	100.000	Carlito_syrichta
ENSETEG00000003978	XRN1	88	99.194	ENSCCAG00000034800	XRN1	86	100.000	Cebus_capucinus
ENSETEG00000003978	XRN1	88	99.194	ENSCATG00000041794	XRN1	86	100.000	Cercocebus_atys
ENSETEG00000003978	XRN1	88	97.581	ENSCLAG00000001451	XRN1	86	99.099	Chinchilla_lanigera
ENSETEG00000003978	XRN1	88	99.194	ENSCSAG00000011265	XRN1	86	100.000	Chlorocebus_sabaeus
ENSETEG00000003978	XRN1	88	99.194	ENSCANG00000037495	XRN1	86	100.000	Colobus_angolensis_palliatus
ENSETEG00000003978	XRN1	88	97.581	ENSCGRG00001019411	Xrn1	86	98.198	Cricetulus_griseus_chok1gshd
ENSETEG00000003978	XRN1	88	97.581	ENSCGRG00000012464	Xrn1	86	98.198	Cricetulus_griseus_crigri
ENSETEG00000003978	XRN1	81	62.605	ENSCSEG00000021285	xrn1	71	93.671	Cynoglossus_semilaevis
ENSETEG00000003978	XRN1	54	70.248	ENSCVAG00000013089	xrn1	77	69.369	Cyprinodon_variegatus
ENSETEG00000003978	XRN1	88	73.554	ENSDARG00000091652	xrn1	98	61.814	Danio_rerio
ENSETEG00000003978	XRN1	88	97.581	ENSDORG00000013833	Xrn1	86	99.099	Dipodomys_ordii
ENSETEG00000003978	XRN1	88	97.581	ENSEASG00005002687	XRN1	86	98.198	Equus_asinus_asinus
ENSETEG00000003978	XRN1	88	98.387	ENSECAG00000008301	XRN1	86	99.099	Equus_caballus
ENSETEG00000003978	XRN1	82	100.000	ENSEEUG00000011323	XRN1	81	100.000	Erinaceus_europaeus
ENSETEG00000003978	XRN1	88	70.248	ENSELUG00000000169	xrn1	86	70.270	Esox_lucius
ENSETEG00000003978	XRN1	88	94.355	ENSFCAG00000027589	XRN1	85	94.595	Felis_catus
ENSETEG00000003978	XRN1	88	90.323	ENSFALG00000007021	XRN1	86	89.189	Ficedula_albicollis
ENSETEG00000003978	XRN1	88	97.581	ENSFDAG00000020494	XRN1	86	99.099	Fukomys_damarensis
ENSETEG00000003978	XRN1	70	72.973	ENSGMOG00000006396	xrn1	66	72.973	Gadus_morhua
ENSETEG00000003978	XRN1	88	92.742	ENSGALG00000002706	XRN1	86	91.892	Gallus_gallus
ENSETEG00000003978	XRN1	88	68.595	ENSGACG00000014328	xrn1	86	68.468	Gasterosteus_aculeatus
ENSETEG00000003978	XRN1	82	90.323	ENSGAGG00000017535	XRN1	85	90.090	Gopherus_agassizii
ENSETEG00000003978	XRN1	88	99.194	ENSGGOG00000008047	XRN1	86	100.000	Gorilla_gorilla
ENSETEG00000003978	XRN1	88	71.074	ENSHBUG00000005908	xrn1	85	71.171	Haplochromis_burtoni
ENSETEG00000003978	XRN1	88	98.387	ENSHGLG00000014476	XRN1	86	100.000	Heterocephalus_glaber_female
ENSETEG00000003978	XRN1	88	98.387	ENSHGLG00100015130	XRN1	86	100.000	Heterocephalus_glaber_male
ENSETEG00000003978	XRN1	85	74.380	ENSHCOG00000014062	xrn1	85	73.874	Hippocampus_comes
ENSETEG00000003978	XRN1	88	71.901	ENSIPUG00000015229	xrn1	85	71.171	Ictalurus_punctatus
ENSETEG00000003978	XRN1	88	99.194	ENSSTOG00000013552	XRN1	86	100.000	Ictidomys_tridecemlineatus
ENSETEG00000003978	XRN1	88	98.387	ENSJJAG00000010863	Xrn1	86	99.099	Jaculus_jaculus
ENSETEG00000003978	XRN1	82	68.548	ENSKMAG00000021356	xrn1	86	68.468	Kryptolebias_marmoratus
ENSETEG00000003978	XRN1	82	69.421	ENSLBEG00000018656	xrn1	74	94.872	Labrus_bergylta
ENSETEG00000003978	XRN1	88	83.871	ENSLACG00000009020	XRN1	86	82.883	Latimeria_chalumnae
ENSETEG00000003978	XRN1	88	78.226	ENSLOCG00000007944	xrn1	86	77.477	Lepisosteus_oculatus
ENSETEG00000003978	XRN1	54	99.194	ENSLAFG00000015426	XRN1	85	99.194	Loxodonta_africana
ENSETEG00000003978	XRN1	88	99.194	ENSMFAG00000032599	XRN1	86	100.000	Macaca_fascicularis
ENSETEG00000003978	XRN1	88	99.194	ENSMMUG00000014038	XRN1	86	100.000	Macaca_mulatta
ENSETEG00000003978	XRN1	88	99.194	ENSMNEG00000034217	XRN1	86	100.000	Macaca_nemestrina
ENSETEG00000003978	XRN1	81	71.074	ENSMAMG00000013219	xrn1	84	70.270	Mastacembelus_armatus
ENSETEG00000003978	XRN1	88	71.074	ENSMZEG00005015099	xrn1	86	71.171	Maylandia_zebra
ENSETEG00000003978	XRN1	88	93.548	ENSMGAG00000006333	XRN1	87	92.793	Meleagris_gallopavo
ENSETEG00000003978	XRN1	88	99.194	ENSMICG00000048948	XRN1	86	100.000	Microcebus_murinus
ENSETEG00000003978	XRN1	88	91.935	ENSMODG00000021236	XRN1	86	91.892	Monodelphis_domestica
ENSETEG00000003978	XRN1	84	67.769	ENSMALG00000004098	xrn1	82	66.667	Monopterus_albus
ENSETEG00000003978	XRN1	84	96.774	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSETEG00000003978	XRN1	88	96.774	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSETEG00000003978	XRN1	88	96.774	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSETEG00000003978	XRN1	88	96.774	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSETEG00000003978	XRN1	88	99.194	ENSMPUG00000012040	XRN1	86	100.000	Mustela_putorius_furo
ENSETEG00000003978	XRN1	87	97.297	ENSMLUG00000016885	XRN1	86	97.297	Myotis_lucifugus
ENSETEG00000003978	XRN1	88	98.387	ENSNLEG00000004726	XRN1	86	99.099	Nomascus_leucogenys
ENSETEG00000003978	XRN1	68	98.611	ENSMEUG00000014473	-	67	98.718	Notamacropus_eugenii
ENSETEG00000003978	XRN1	62	97.959	ENSOPRG00000007337	-	61	97.959	Ochotona_princeps
ENSETEG00000003978	XRN1	88	69.421	ENSONIG00000016673	xrn1	86	69.369	Oreochromis_niloticus
ENSETEG00000003978	XRN1	81	89.516	ENSOANG00000006735	XRN1	86	89.189	Ornithorhynchus_anatinus
ENSETEG00000003978	XRN1	88	98.387	ENSOCUG00000001861	XRN1	86	99.099	Oryctolagus_cuniculus
ENSETEG00000003978	XRN1	88	67.769	ENSORLG00000013005	xrn1	84	66.667	Oryzias_latipes
ENSETEG00000003978	XRN1	88	67.769	ENSORLG00020005559	xrn1	86	66.667	Oryzias_latipes_hni
ENSETEG00000003978	XRN1	88	67.769	ENSORLG00015022523	xrn1	86	66.667	Oryzias_latipes_hsok
ENSETEG00000003978	XRN1	88	69.421	ENSOMEG00000015397	xrn1	86	68.468	Oryzias_melastigma
ENSETEG00000003978	XRN1	88	98.387	ENSOGAG00000000170	XRN1	86	99.099	Otolemur_garnettii
ENSETEG00000003978	XRN1	88	99.194	ENSOARG00000006343	XRN1	86	99.099	Ovis_aries
ENSETEG00000003978	XRN1	88	99.194	ENSPPAG00000010180	XRN1	86	100.000	Pan_paniscus
ENSETEG00000003978	XRN1	88	99.194	ENSPPRG00000007125	XRN1	86	100.000	Panthera_pardus
ENSETEG00000003978	XRN1	88	99.194	ENSPTIG00000021081	XRN1	86	100.000	Panthera_tigris_altaica
ENSETEG00000003978	XRN1	88	99.194	ENSPTRG00000015482	XRN1	86	100.000	Pan_troglodytes
ENSETEG00000003978	XRN1	88	99.194	ENSPANG00000010638	XRN1	86	100.000	Papio_anubis
ENSETEG00000003978	XRN1	88	88.095	ENSPSIG00000018050	XRN1	86	87.611	Pelodiscus_sinensis
ENSETEG00000003978	XRN1	88	93.548	ENSPCIG00000028735	XRN1	86	93.694	Phascolarctos_cinereus
ENSETEG00000003978	XRN1	78	70.248	ENSPFOG00000013932	xrn1	83	69.369	Poecilia_formosa
ENSETEG00000003978	XRN1	78	70.248	ENSPLAG00000021653	xrn1	83	69.369	Poecilia_latipinna
ENSETEG00000003978	XRN1	76	70.248	ENSPMEG00000003076	xrn1	79	69.369	Poecilia_mexicana
ENSETEG00000003978	XRN1	88	70.248	ENSPREG00000021147	xrn1	86	69.369	Poecilia_reticulata
ENSETEG00000003978	XRN1	88	99.194	ENSPPYG00000014172	XRN1	86	100.000	Pongo_abelii
ENSETEG00000003978	XRN1	82	97.581	ENSPCAG00000005638	XRN1	89	98.198	Procavia_capensis
ENSETEG00000003978	XRN1	88	99.194	ENSPCOG00000013089	XRN1	86	100.000	Propithecus_coquereli
ENSETEG00000003978	XRN1	83	96.774	ENSPVAG00000016265	XRN1	81	97.297	Pteropus_vampyrus
ENSETEG00000003978	XRN1	88	70.248	ENSPNYG00000010570	xrn1	86	70.270	Pundamilia_nyererei
ENSETEG00000003978	XRN1	86	75.806	ENSPNAG00000023531	xrn1	85	74.775	Pygocentrus_nattereri
ENSETEG00000003978	XRN1	88	94.355	ENSRNOG00000042951	Xrn1	86	94.595	Rattus_norvegicus
ENSETEG00000003978	XRN1	88	99.194	ENSRBIG00000041227	XRN1	86	100.000	Rhinopithecus_bieti
ENSETEG00000003978	XRN1	88	99.194	ENSSBOG00000029561	XRN1	86	100.000	Saimiri_boliviensis_boliviensis
ENSETEG00000003978	XRN1	88	92.742	ENSSHAG00000016207	XRN1	87	92.793	Sarcophilus_harrisii
ENSETEG00000003978	XRN1	88	73.387	ENSSFOG00015024211	xrn1	85	72.973	Scleropages_formosus
ENSETEG00000003978	XRN1	82	69.421	ENSSMAG00000016534	xrn1	81	70.270	Scophthalmus_maximus
ENSETEG00000003978	XRN1	77	69.421	ENSSDUG00000010306	xrn1	81	69.369	Seriola_dumerili
ENSETEG00000003978	XRN1	83	69.421	ENSSLDG00000021543	xrn1	85	69.369	Seriola_lalandi_dorsalis
ENSETEG00000003978	XRN1	58	93.878	ENSSARG00000007741	-	70	93.878	Sorex_araneus
ENSETEG00000003978	XRN1	88	89.516	ENSTGUG00000008498	XRN1	86	89.189	Taeniopygia_guttata
ENSETEG00000003978	XRN1	88	64.463	ENSTRUG00000004895	xrn1	97	59.167	Takifugu_rubripes
ENSETEG00000003978	XRN1	88	65.289	ENSTNIG00000017615	xrn1	86	63.964	Tetraodon_nigroviridis
ENSETEG00000003978	XRN1	70	99.194	ENSTBEG00000003256	XRN1	67	100.000	Tupaia_belangeri
ENSETEG00000003978	XRN1	92	99.194	ENSTTRG00000012914	XRN1	90	100.000	Tursiops_truncatus
ENSETEG00000003978	XRN1	88	99.194	ENSUAMG00000001608	XRN1	86	100.000	Ursus_americanus
ENSETEG00000003978	XRN1	88	99.194	ENSUMAG00000013625	XRN1	86	100.000	Ursus_maritimus
ENSETEG00000003978	XRN1	88	98.387	ENSVPAG00000004690	XRN1	86	99.099	Vicugna_pacos
ENSETEG00000003978	XRN1	88	99.194	ENSVVUG00000024461	XRN1	86	100.000	Vulpes_vulpes
ENSETEG00000003978	XRN1	88	83.871	ENSXETG00000000619	xrn1	86	82.883	Xenopus_tropicalis
ENSETEG00000003978	XRN1	88	68.548	ENSXCOG00000007917	xrn1	85	67.568	Xiphophorus_couchianus
ENSETEG00000003978	XRN1	80	68.548	ENSXMAG00000018320	xrn1	82	67.568	Xiphophorus_maculatus