EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSETEG00000004867 (Gene tree)
Gene ID: -
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Echinops_telfairi
Status: putative
Strand: Minus strand
Length: 16564 bases
Position: chrGeneScaffold_2206:2401-18964
Accession: 101650731
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSETEP00000003973	APOBEC_N	PF08210.11	2.9e-30	1	1
ENSETEP00000003973	APOBEC_C	PF05240.14	7.6e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSETET00000004865	APOBEC1-201	711	XM_004717433	ENSETEP00000003973	236 (aa)	XP_004717490	UPI0000E40F3C

Gene Model

Click here to download ENSETEG00000004867's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSETEG00000004867's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSETEG00000004867	APOBEC1	56	31.884	ENSETEG00000000624	APOBEC2	59	31.884

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSETEG00000004867	APOBEC1	99	77.872	ENSG00000111701	APOBEC1	99	77.872	Homo_sapiens
ENSETEG00000004867	APOBEC1	97	74.783	ENSAMEG00000007098	APOBEC1	97	74.783	Ailuropoda_melanoleuca
ENSETEG00000004867	APOBEC1	72	39.535	ENSACAG00000028578	-	93	39.535	Anolis_carolinensis
ENSETEG00000004867	APOBEC1	99	75.745	ENSANAG00000027743	APOBEC1	94	75.745	Aotus_nancymaae
ENSETEG00000004867	APOBEC1	97	70.000	ENSBTAG00000014683	APOBEC1	97	70.000	Bos_taurus
ENSETEG00000004867	APOBEC1	93	76.818	ENSCJAG00000005398	APOBEC1	99	76.818	Callithrix_jacchus
ENSETEG00000004867	APOBEC1	99	74.468	ENSCAFG00000013901	APOBEC1	99	74.468	Canis_familiaris
ENSETEG00000004867	APOBEC1	95	73.778	ENSCAFG00020003511	APOBEC1	94	73.778	Canis_lupus_dingo
ENSETEG00000004867	APOBEC1	97	70.435	ENSCHIG00000011898	APOBEC1	95	70.435	Capra_hircus
ENSETEG00000004867	APOBEC1	59	74.101	ENSTSYG00000029141	APOBEC1	98	74.101	Carlito_syrichta
ENSETEG00000004867	APOBEC1	91	68.372	ENSCAPG00000015882	-	99	68.372	Cavia_aperea
ENSETEG00000004867	APOBEC1	99	66.809	ENSCPOG00000033068	APOBEC1	99	66.809	Cavia_porcellus
ENSETEG00000004867	APOBEC1	99	77.872	ENSCCAG00000022258	APOBEC1	99	77.872	Cebus_capucinus
ENSETEG00000004867	APOBEC1	99	79.149	ENSCATG00000021613	APOBEC1	94	79.149	Cercocebus_atys
ENSETEG00000004867	APOBEC1	97	69.565	ENSCLAG00000014645	APOBEC1	99	69.565	Chinchilla_lanigera
ENSETEG00000004867	APOBEC1	80	78.307	ENSCSAG00000009817	APOBEC1	98	78.307	Chlorocebus_sabaeus
ENSETEG00000004867	APOBEC1	80	47.449	ENSCPBG00000014328	-	86	47.449	Chrysemys_picta_bellii
ENSETEG00000004867	APOBEC1	83	46.193	ENSCPBG00000014329	-	54	46.193	Chrysemys_picta_bellii
ENSETEG00000004867	APOBEC1	86	40.097	ENSCPBG00000014327	-	81	39.720	Chrysemys_picta_bellii
ENSETEG00000004867	APOBEC1	92	43.891	ENSCPBG00000014331	-	88	43.891	Chrysemys_picta_bellii
ENSETEG00000004867	APOBEC1	79	50.532	ENSCPBG00000014335	-	76	50.532	Chrysemys_picta_bellii
ENSETEG00000004867	APOBEC1	78	46.277	ENSCPBG00000017398	-	82	46.277	Chrysemys_picta_bellii
ENSETEG00000004867	APOBEC1	97	79.039	ENSCANG00000038359	APOBEC1	99	79.039	Colobus_angolensis_palliatus
ENSETEG00000004867	APOBEC1	97	70.435	ENSCGRG00001011130	Apobec1	100	70.435	Cricetulus_griseus_chok1gshd
ENSETEG00000004867	APOBEC1	97	70.435	ENSCGRG00000008644	Apobec1	100	70.435	Cricetulus_griseus_crigri
ENSETEG00000004867	APOBEC1	99	78.298	ENSDNOG00000010926	APOBEC1	99	78.298	Dasypus_novemcinctus
ENSETEG00000004867	APOBEC1	91	61.860	ENSDORG00000023717	Apobec1	100	61.860	Dipodomys_ordii
ENSETEG00000004867	APOBEC1	97	78.261	ENSEASG00005015951	APOBEC1	96	78.261	Equus_asinus_asinus
ENSETEG00000004867	APOBEC1	80	77.778	ENSECAG00000017163	APOBEC1	98	77.778	Equus_caballus
ENSETEG00000004867	APOBEC1	94	63.964	ENSEEUG00000009112	-	98	63.964	Erinaceus_europaeus
ENSETEG00000004867	APOBEC1	87	53.171	ENSEEUG00000007530	-	97	53.171	Erinaceus_europaeus
ENSETEG00000004867	APOBEC1	99	77.872	ENSFCAG00000009350	APOBEC1	99	77.872	Felis_catus
ENSETEG00000004867	APOBEC1	60	48.611	ENSFALG00000007257	-	70	48.611	Ficedula_albicollis
ENSETEG00000004867	APOBEC1	88	60.386	ENSFDAG00000018470	APOBEC1	99	60.386	Fukomys_damarensis
ENSETEG00000004867	APOBEC1	92	48.636	ENSGAGG00000011837	-	88	53.719	Gopherus_agassizii
ENSETEG00000004867	APOBEC1	68	48.466	ENSGAGG00000004947	-	80	48.466	Gopherus_agassizii
ENSETEG00000004867	APOBEC1	82	45.361	ENSGAGG00000021744	-	75	45.361	Gopherus_agassizii
ENSETEG00000004867	APOBEC1	94	39.565	ENSGAGG00000021745	-	80	39.241	Gopherus_agassizii
ENSETEG00000004867	APOBEC1	72	48.837	ENSGAGG00000006624	-	62	48.837	Gopherus_agassizii
ENSETEG00000004867	APOBEC1	99	66.809	ENSHGLG00000001495	APOBEC1	99	66.809	Heterocephalus_glaber_female
ENSETEG00000004867	APOBEC1	99	65.957	ENSHGLG00100002187	APOBEC1	99	65.957	Heterocephalus_glaber_male
ENSETEG00000004867	APOBEC1	91	59.070	ENSSTOG00000021971	APOBEC1	100	74.490	Ictidomys_tridecemlineatus
ENSETEG00000004867	APOBEC1	97	71.304	ENSJJAG00000022108	Apobec1	100	71.304	Jaculus_jaculus
ENSETEG00000004867	APOBEC1	94	77.027	ENSLAFG00000030837	APOBEC1	99	77.027	Loxodonta_africana
ENSETEG00000004867	APOBEC1	99	79.574	ENSMFAG00000000277	APOBEC1	99	79.574	Macaca_fascicularis
ENSETEG00000004867	APOBEC1	99	79.149	ENSMNEG00000029670	APOBEC1	99	79.149	Macaca_nemestrina
ENSETEG00000004867	APOBEC1	99	79.149	ENSMLEG00000036301	APOBEC1	99	79.149	Mandrillus_leucophaeus
ENSETEG00000004867	APOBEC1	92	68.664	ENSMAUG00000022167	Apobec1	97	68.664	Mesocricetus_auratus
ENSETEG00000004867	APOBEC1	99	76.170	ENSMICG00000043645	APOBEC1	99	76.170	Microcebus_murinus
ENSETEG00000004867	APOBEC1	99	64.255	ENSMODG00000018004	APOBEC1	99	64.255	Monodelphis_domestica
ENSETEG00000004867	APOBEC1	97	67.686	ENSMUSG00000040613	Apobec1	99	67.686	Mus_musculus
ENSETEG00000004867	APOBEC1	97	66.812	MGP_PahariEiJ_G0022580	-	99	66.812	Mus_pahari
ENSETEG00000004867	APOBEC1	97	67.686	MGP_SPRETEiJ_G0029857	Apobec1	99	67.686	Mus_spretus
ENSETEG00000004867	APOBEC1	97	73.043	ENSMPUG00000017532	APOBEC1	97	73.043	Mustela_putorius_furo
ENSETEG00000004867	APOBEC1	97	70.000	ENSNGAG00000022607	Apobec1	100	70.000	Nannospalax_galili
ENSETEG00000004867	APOBEC1	99	78.298	ENSNLEG00000005342	APOBEC1	99	78.298	Nomascus_leucogenys
ENSETEG00000004867	APOBEC1	99	63.830	ENSMEUG00000013406	APOBEC1	99	63.830	Notamacropus_eugenii
ENSETEG00000004867	APOBEC1	77	64.286	ENSOPRG00000009508	-	100	64.286	Ochotona_princeps
ENSETEG00000004867	APOBEC1	99	72.650	ENSOCUG00000025736	APOBEC1	87	72.650	Oryctolagus_cuniculus
ENSETEG00000004867	APOBEC1	97	75.217	ENSOGAG00000026415	APOBEC1	97	75.217	Otolemur_garnettii
ENSETEG00000004867	APOBEC1	99	68.511	ENSOARG00000002072	APOBEC1	98	68.511	Ovis_aries
ENSETEG00000004867	APOBEC1	99	70.213	ENSPPAG00000027657	APOBEC1	99	70.213	Pan_paniscus
ENSETEG00000004867	APOBEC1	99	77.447	ENSPPRG00000012182	APOBEC1	99	77.447	Panthera_pardus
ENSETEG00000004867	APOBEC1	99	77.447	ENSPTIG00000020280	APOBEC1	99	77.447	Panthera_tigris_altaica
ENSETEG00000004867	APOBEC1	99	77.872	ENSPTRG00000004614	APOBEC1	99	77.872	Pan_troglodytes
ENSETEG00000004867	APOBEC1	99	79.149	ENSPANG00000021027	APOBEC1	99	79.149	Papio_anubis
ENSETEG00000004867	APOBEC1	54	52.727	ENSPSIG00000012791	-	72	52.727	Pelodiscus_sinensis
ENSETEG00000004867	APOBEC1	99	41.841	ENSPSIG00000012568	-	96	41.841	Pelodiscus_sinensis
ENSETEG00000004867	APOBEC1	97	66.957	ENSPEMG00000023841	Apobec1	100	66.957	Peromyscus_maniculatus_bairdii
ENSETEG00000004867	APOBEC1	99	68.803	ENSPCIG00000023973	APOBEC1	99	68.803	Phascolarctos_cinereus
ENSETEG00000004867	APOBEC1	99	77.872	ENSPPYG00000004228	APOBEC1	94	77.872	Pongo_abelii
ENSETEG00000004867	APOBEC1	80	78.723	ENSPCAG00000008733	APOBEC1	100	78.723	Procavia_capensis
ENSETEG00000004867	APOBEC1	94	76.018	ENSPCOG00000013957	APOBEC1	97	76.018	Propithecus_coquereli
ENSETEG00000004867	APOBEC1	99	58.723	ENSPVAG00000010709	APOBEC1	99	58.723	Pteropus_vampyrus
ENSETEG00000004867	APOBEC1	97	66.376	ENSRNOG00000015411	Apobec1	99	66.376	Rattus_norvegicus
ENSETEG00000004867	APOBEC1	99	78.723	ENSRBIG00000031161	APOBEC1	99	78.723	Rhinopithecus_bieti
ENSETEG00000004867	APOBEC1	99	78.298	ENSRROG00000033576	APOBEC1	99	78.298	Rhinopithecus_roxellana
ENSETEG00000004867	APOBEC1	74	78.161	ENSSBOG00000030587	APOBEC1	98	78.161	Saimiri_boliviensis_boliviensis
ENSETEG00000004867	APOBEC1	96	69.469	ENSSHAG00000008925	APOBEC1	99	69.469	Sarcophilus_harrisii
ENSETEG00000004867	APOBEC1	56	64.662	ENSSARG00000011972	-	100	64.662	Sorex_araneus
ENSETEG00000004867	APOBEC1	73	64.162	ENSSARG00000000032	-	100	64.162	Sorex_araneus
ENSETEG00000004867	APOBEC1	87	40.865	ENSSPUG00000009044	-	79	40.865	Sphenodon_punctatus
ENSETEG00000004867	APOBEC1	97	75.652	ENSSSCG00000000668	APOBEC1	97	75.652	Sus_scrofa
ENSETEG00000004867	APOBEC1	62	51.351	ENSTGUG00000013118	-	100	51.351	Taeniopygia_guttata
ENSETEG00000004867	APOBEC1	99	69.362	ENSTBEG00000010043	APOBEC1	99	69.362	Tupaia_belangeri
ENSETEG00000004867	APOBEC1	80	74.468	ENSTTRG00000014015	APOBEC1	100	74.468	Tursiops_truncatus
ENSETEG00000004867	APOBEC1	99	72.766	ENSUAMG00000011636	APOBEC1	96	72.766	Ursus_americanus
ENSETEG00000004867	APOBEC1	99	72.766	ENSUMAG00000016552	APOBEC1	96	72.766	Ursus_maritimus
ENSETEG00000004867	APOBEC1	99	72.340	ENSVPAG00000001343	APOBEC1	99	72.340	Vicugna_pacos
ENSETEG00000004867	APOBEC1	99	74.468	ENSVVUG00000010522	APOBEC1	99	74.468	Vulpes_vulpes