EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSETEG00000008374 (Gene tree)
Gene ID: -
Gene Symbol: LSM12
Alias: -
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Echinops_telfairi
Status: putative
Strand: Minus strand
Length: 13913 bases
Position: chrGeneScaffold_5699:56474-70386
Accession: 26407
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSETEP00000006805	AD	PF09793.9	1.1e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSETET00000008373	LSM12-201	588	-	ENSETEP00000006805	195 (aa)	-	UPI0000E431F5

Gene Model

Click here to download ENSETEG00000008374's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSETEG00000008374's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSETEG00000008374	LSM12	90	87.429	ENSETEG00000011012	-	100	87.429

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSETEG00000008374	LSM12	100	99.487	ENSG00000161654	LSM12	100	99.487	Homo_sapiens
ENSETEG00000008374	LSM12	100	85.714	ENSAPOG00000007907	lsm12b	100	85.714	Acanthochromis_polyacanthus
ENSETEG00000008374	LSM12	100	97.475	ENSAMEG00000018321	LSM12	100	97.475	Ailuropoda_melanoleuca
ENSETEG00000008374	LSM12	100	83.673	ENSACIG00000008538	lsm12b	100	83.673	Amphilophus_citrinellus
ENSETEG00000008374	LSM12	100	85.204	ENSAOCG00000021847	lsm12b	88	85.204	Amphiprion_ocellaris
ENSETEG00000008374	LSM12	100	85.204	ENSAPEG00000002252	lsm12b	100	85.204	Amphiprion_percula
ENSETEG00000008374	LSM12	100	84.694	ENSATEG00000005705	lsm12b	100	84.694	Anabas_testudineus
ENSETEG00000008374	LSM12	99	93.264	ENSACAG00000004618	LSM12	99	93.264	Anolis_carolinensis
ENSETEG00000008374	LSM12	100	99.487	ENSANAG00000029011	LSM12	100	100.000	Aotus_nancymaae
ENSETEG00000008374	LSM12	100	84.184	ENSACLG00000026332	lsm12b	100	84.184	Astatotilapia_calliptera
ENSETEG00000008374	LSM12	100	78.571	ENSAMXG00000036117	lsm12a	91	78.571	Astyanax_mexicanus
ENSETEG00000008374	LSM12	100	84.184	ENSAMXG00000032952	lsm12b	100	84.184	Astyanax_mexicanus
ENSETEG00000008374	LSM12	100	99.487	ENSBTAG00000016252	LSM12	100	99.487	Bos_taurus
ENSETEG00000008374	LSM12	100	99.487	ENSCJAG00000048480	LSM12	100	100.000	Callithrix_jacchus
ENSETEG00000008374	LSM12	100	99.487	ENSCAFG00000014379	LSM12	92	99.487	Canis_familiaris
ENSETEG00000008374	LSM12	100	99.487	ENSCAFG00020012173	LSM12	100	99.487	Canis_lupus_dingo
ENSETEG00000008374	LSM12	100	99.487	ENSCHIG00000018175	LSM12	100	99.487	Capra_hircus
ENSETEG00000008374	LSM12	100	99.487	ENSTSYG00000036361	LSM12	100	99.487	Carlito_syrichta
ENSETEG00000008374	LSM12	83	93.827	ENSCAPG00000009647	LSM12	89	93.827	Cavia_aperea
ENSETEG00000008374	LSM12	100	97.436	ENSCPOG00000012860	LSM12	100	98.165	Cavia_porcellus
ENSETEG00000008374	LSM12	100	99.487	ENSCCAG00000032905	LSM12	100	100.000	Cebus_capucinus
ENSETEG00000008374	LSM12	100	99.487	ENSCATG00000030577	-	100	100.000	Cercocebus_atys
ENSETEG00000008374	LSM12	100	98.462	ENSCLAG00000015759	LSM12	100	98.462	Chinchilla_lanigera
ENSETEG00000008374	LSM12	100	98.974	ENSCSAG00000003486	LSM12	100	98.974	Chlorocebus_sabaeus
ENSETEG00000008374	LSM12	56	99.083	ENSCHOG00000001198	LSM12	100	99.083	Choloepus_hoffmanni
ENSETEG00000008374	LSM12	99	92.746	ENSCPBG00000027105	LSM12	99	92.746	Chrysemys_picta_bellii
ENSETEG00000008374	LSM12	100	99.487	ENSCANG00000043328	LSM12	100	100.000	Colobus_angolensis_palliatus
ENSETEG00000008374	LSM12	100	99.487	ENSCGRG00001002094	Lsm12	100	100.000	Cricetulus_griseus_chok1gshd
ENSETEG00000008374	LSM12	86	92.262	ENSCGRG00000004316	Lsm12	95	92.262	Cricetulus_griseus_crigri
ENSETEG00000008374	LSM12	100	84.184	ENSCSEG00000008434	lsm12b	100	84.184	Cynoglossus_semilaevis
ENSETEG00000008374	LSM12	100	84.184	ENSCVAG00000008755	lsm12b	100	84.184	Cyprinodon_variegatus
ENSETEG00000008374	LSM12	100	84.694	ENSDARG00000109510	lsm12b	100	84.694	Danio_rerio
ENSETEG00000008374	LSM12	100	76.531	ENSDARG00000028848	lsm12a	100	76.531	Danio_rerio
ENSETEG00000008374	LSM12	100	98.974	ENSDNOG00000002418	LSM12	91	98.974	Dasypus_novemcinctus
ENSETEG00000008374	LSM12	100	99.487	ENSDORG00000016381	Lsm12	100	100.000	Dipodomys_ordii
ENSETEG00000008374	LSM12	83	32.530	FBgn0030364	Lsm12	76	32.335	Drosophila_melanogaster
ENSETEG00000008374	LSM12	74	31.646	FBgn0036057	CG14164	83	31.646	Drosophila_melanogaster
ENSETEG00000008374	LSM12	84	64.024	ENSEBUG00000016299	lsm12a	92	64.024	Eptatretus_burgeri
ENSETEG00000008374	LSM12	100	99.487	ENSEASG00005010155	LSM12	100	99.487	Equus_asinus_asinus
ENSETEG00000008374	LSM12	100	99.487	ENSECAG00000009071	LSM12	100	100.000	Equus_caballus
ENSETEG00000008374	LSM12	78	98.039	ENSEEUG00000002419	-	100	98.039	Erinaceus_europaeus
ENSETEG00000008374	LSM12	100	83.673	ENSELUG00000015538	lsm12b	100	79.082	Esox_lucius
ENSETEG00000008374	LSM12	100	81.633	ENSELUG00000000256	-	100	81.633	Esox_lucius
ENSETEG00000008374	LSM12	100	99.487	ENSFCAG00000037021	LSM12	100	99.487	Felis_catus
ENSETEG00000008374	LSM12	76	98.649	ENSFDAG00000008954	LSM12	87	98.649	Fukomys_damarensis
ENSETEG00000008374	LSM12	100	83.163	ENSFHEG00000019913	lsm12b	100	83.163	Fundulus_heteroclitus
ENSETEG00000008374	LSM12	81	83.544	ENSGMOG00000015449	lsm12b	100	83.544	Gadus_morhua
ENSETEG00000008374	LSM12	78	93.464	ENSGALG00000039803	LSM12	100	93.464	Gallus_gallus
ENSETEG00000008374	LSM12	100	83.673	ENSGAFG00000011829	lsm12b	100	83.673	Gambusia_affinis
ENSETEG00000008374	LSM12	81	84.177	ENSGACG00000003428	lsm12b	100	84.177	Gasterosteus_aculeatus
ENSETEG00000008374	LSM12	99	93.782	ENSGAGG00000021965	LSM12	99	93.782	Gopherus_agassizii
ENSETEG00000008374	LSM12	100	99.487	ENSGGOG00000010589	-	100	100.000	Gorilla_gorilla
ENSETEG00000008374	LSM12	85	85.030	ENSHBUG00000007667	lsm12b	74	85.030	Haplochromis_burtoni
ENSETEG00000008374	LSM12	100	99.487	ENSHGLG00000011411	LSM12	100	100.000	Heterocephalus_glaber_female
ENSETEG00000008374	LSM12	91	86.740	ENSHGLG00100000241	LSM12	96	86.740	Heterocephalus_glaber_male
ENSETEG00000008374	LSM12	100	83.673	ENSHCOG00000002094	lsm12b	100	83.673	Hippocampus_comes
ENSETEG00000008374	LSM12	100	84.694	ENSIPUG00000014800	lsm12	100	84.694	Ictalurus_punctatus
ENSETEG00000008374	LSM12	99	75.258	ENSIPUG00000008936	lsm12a	99	75.258	Ictalurus_punctatus
ENSETEG00000008374	LSM12	100	99.487	ENSSTOG00000007403	LSM12	100	100.000	Ictidomys_tridecemlineatus
ENSETEG00000008374	LSM12	97	87.368	ENSJJAG00000011793	-	100	87.368	Jaculus_jaculus
ENSETEG00000008374	LSM12	100	98.462	ENSJJAG00000004364	-	100	98.462	Jaculus_jaculus
ENSETEG00000008374	LSM12	81	84.277	ENSJJAG00000014652	-	95	84.277	Jaculus_jaculus
ENSETEG00000008374	LSM12	86	85.714	ENSKMAG00000007704	lsm12b	57	85.714	Kryptolebias_marmoratus
ENSETEG00000008374	LSM12	100	85.204	ENSLBEG00000027999	lsm12b	100	85.204	Labrus_bergylta
ENSETEG00000008374	LSM12	99	89.637	ENSLACG00000015981	LSM12	99	89.637	Latimeria_chalumnae
ENSETEG00000008374	LSM12	100	84.184	ENSLOCG00000013079	lsm12b	99	84.184	Lepisosteus_oculatus
ENSETEG00000008374	LSM12	100	99.487	ENSLAFG00000005202	LSM12	100	99.487	Loxodonta_africana
ENSETEG00000008374	LSM12	100	99.487	ENSMFAG00000031376	LSM12	100	100.000	Macaca_fascicularis
ENSETEG00000008374	LSM12	65	86.207	ENSMMUG00000042106	-	100	86.207	Macaca_mulatta
ENSETEG00000008374	LSM12	65	86.207	ENSMMUG00000038408	-	100	86.207	Macaca_mulatta
ENSETEG00000008374	LSM12	100	99.487	ENSMMUG00000006804	LSM12	100	100.000	Macaca_mulatta
ENSETEG00000008374	LSM12	100	99.487	ENSMNEG00000030594	-	100	100.000	Macaca_nemestrina
ENSETEG00000008374	LSM12	100	99.487	ENSMLEG00000039934	LSM12	100	100.000	Mandrillus_leucophaeus
ENSETEG00000008374	LSM12	100	84.694	ENSMAMG00000004279	lsm12b	100	84.694	Mastacembelus_armatus
ENSETEG00000008374	LSM12	100	84.184	ENSMZEG00005005754	lsm12b	100	84.184	Maylandia_zebra
ENSETEG00000008374	LSM12	100	98.974	ENSMICG00000037219	LSM12	100	99.083	Microcebus_murinus
ENSETEG00000008374	LSM12	100	83.590	ENSMOCG00000017015	-	86	83.590	Microtus_ochrogaster
ENSETEG00000008374	LSM12	100	99.487	ENSMOCG00000019878	-	100	100.000	Microtus_ochrogaster
ENSETEG00000008374	LSM12	100	84.694	ENSMMOG00000020848	lsm12b	100	84.694	Mola_mola
ENSETEG00000008374	LSM12	100	84.694	ENSMALG00000007578	lsm12b	100	84.694	Monopterus_albus
ENSETEG00000008374	LSM12	100	98.974	MGP_CAROLIEiJ_G0017241	Lsm12	100	99.083	Mus_caroli
ENSETEG00000008374	LSM12	100	99.487	ENSMUSG00000020922	Lsm12	100	100.000	Mus_musculus
ENSETEG00000008374	LSM12	100	91.509	MGP_PahariEiJ_G0018371	Lsm12	100	100.000	Mus_pahari
ENSETEG00000008374	LSM12	100	98.974	MGP_SPRETEiJ_G0018084	Lsm12	99	100.000	Mus_spretus
ENSETEG00000008374	LSM12	100	98.974	ENSMLUG00000006391	LSM12	100	98.974	Myotis_lucifugus
ENSETEG00000008374	LSM12	100	99.487	ENSNGAG00000001870	Lsm12	100	100.000	Nannospalax_galili
ENSETEG00000008374	LSM12	100	67.822	ENSNGAG00000015429	-	100	67.822	Nannospalax_galili
ENSETEG00000008374	LSM12	100	84.184	ENSNBRG00000006266	lsm12b	100	84.184	Neolamprologus_brichardi
ENSETEG00000008374	LSM12	100	99.487	ENSNLEG00000005580	-	100	100.000	Nomascus_leucogenys
ENSETEG00000008374	LSM12	85	97.576	ENSMEUG00000007501	-	100	97.576	Notamacropus_eugenii
ENSETEG00000008374	LSM12	100	99.487	ENSOPRG00000008552	LSM12	100	99.487	Ochotona_princeps
ENSETEG00000008374	LSM12	100	88.205	ENSODEG00000007886	-	74	88.205	Octodon_degus
ENSETEG00000008374	LSM12	100	97.949	ENSODEG00000017998	-	100	97.949	Octodon_degus
ENSETEG00000008374	LSM12	100	84.184	ENSONIG00000007933	lsm12b	100	84.184	Oreochromis_niloticus
ENSETEG00000008374	LSM12	99	92.268	ENSOCUG00000024823	-	100	92.268	Oryctolagus_cuniculus
ENSETEG00000008374	LSM12	99	93.299	ENSOCUG00000027889	-	100	93.299	Oryctolagus_cuniculus
ENSETEG00000008374	LSM12	99	93.299	ENSOCUG00000021254	-	100	93.299	Oryctolagus_cuniculus
ENSETEG00000008374	LSM12	100	97.475	ENSOCUG00000008566	-	100	97.475	Oryctolagus_cuniculus
ENSETEG00000008374	LSM12	100	84.694	ENSORLG00000011310	lsm12b	100	84.694	Oryzias_latipes
ENSETEG00000008374	LSM12	100	84.694	ENSORLG00020002060	lsm12b	92	84.694	Oryzias_latipes_hni
ENSETEG00000008374	LSM12	100	84.694	ENSORLG00015001647	lsm12b	92	84.694	Oryzias_latipes_hsok
ENSETEG00000008374	LSM12	100	84.694	ENSOMEG00000006184	lsm12b	92	84.694	Oryzias_melastigma
ENSETEG00000008374	LSM12	100	98.974	ENSOGAG00000010489	LSM12	100	98.974	Otolemur_garnettii
ENSETEG00000008374	LSM12	100	96.020	ENSOARG00000006589	LSM12	100	96.020	Ovis_aries
ENSETEG00000008374	LSM12	100	89.231	ENSPPAG00000034974	-	92	100.000	Pan_paniscus
ENSETEG00000008374	LSM12	100	99.487	ENSPPRG00000023420	LSM12	100	99.487	Panthera_pardus
ENSETEG00000008374	LSM12	78	99.346	ENSPTIG00000012704	-	82	99.346	Panthera_tigris_altaica
ENSETEG00000008374	LSM12	73	96.396	ENSPTIG00000014850	-	100	96.396	Panthera_tigris_altaica
ENSETEG00000008374	LSM12	100	99.487	ENSPTRG00000009261	LSM12	100	100.000	Pan_troglodytes
ENSETEG00000008374	LSM12	100	99.487	ENSPANG00000021315	-	100	100.000	Papio_anubis
ENSETEG00000008374	LSM12	99	76.289	ENSPKIG00000017932	-	99	76.289	Paramormyrops_kingsleyae
ENSETEG00000008374	LSM12	100	85.714	ENSPKIG00000021058	lsm12b	100	85.714	Paramormyrops_kingsleyae
ENSETEG00000008374	LSM12	100	84.184	ENSPMGG00000021344	lsm12b	100	84.184	Periophthalmus_magnuspinnatus
ENSETEG00000008374	LSM12	100	99.487	ENSPEMG00000012199	Lsm12	100	100.000	Peromyscus_maniculatus_bairdii
ENSETEG00000008374	LSM12	88	66.860	ENSPMAG00000005461	lsm12a	99	66.860	Petromyzon_marinus
ENSETEG00000008374	LSM12	100	96.410	ENSPCIG00000020244	LSM12	100	96.410	Phascolarctos_cinereus
ENSETEG00000008374	LSM12	100	82.653	ENSPFOG00000015930	lsm12b	100	82.653	Poecilia_formosa
ENSETEG00000008374	LSM12	100	82.653	ENSPLAG00000021089	lsm12b	100	82.653	Poecilia_latipinna
ENSETEG00000008374	LSM12	100	82.653	ENSPMEG00000012961	lsm12b	100	82.653	Poecilia_mexicana
ENSETEG00000008374	LSM12	88	84.795	ENSPREG00000010236	lsm12b	95	84.795	Poecilia_reticulata
ENSETEG00000008374	LSM12	100	99.487	ENSPPYG00000008344	LSM12	100	99.487	Pongo_abelii
ENSETEG00000008374	LSM12	82	98.742	ENSPCAG00000008790	LSM12	100	98.742	Procavia_capensis
ENSETEG00000008374	LSM12	100	99.487	ENSPCOG00000027951	LSM12	100	100.000	Propithecus_coquereli
ENSETEG00000008374	LSM12	100	98.974	ENSPVAG00000013706	LSM12	100	98.974	Pteropus_vampyrus
ENSETEG00000008374	LSM12	100	84.184	ENSPNYG00000003386	lsm12b	100	84.184	Pundamilia_nyererei
ENSETEG00000008374	LSM12	100	77.041	ENSPNAG00000018435	lsm12a	100	77.041	Pygocentrus_nattereri
ENSETEG00000008374	LSM12	100	83.673	ENSPNAG00000004186	lsm12b	100	83.673	Pygocentrus_nattereri
ENSETEG00000008374	LSM12	100	99.487	ENSRNOG00000020894	Lsm12	100	99.487	Rattus_norvegicus
ENSETEG00000008374	LSM12	100	99.487	ENSRBIG00000027910	LSM12	100	100.000	Rhinopithecus_bieti
ENSETEG00000008374	LSM12	100	60.513	ENSRROG00000000537	-	100	60.513	Rhinopithecus_roxellana
ENSETEG00000008374	LSM12	100	99.487	ENSRROG00000045530	-	100	100.000	Rhinopithecus_roxellana
ENSETEG00000008374	LSM12	100	99.487	ENSSBOG00000025310	LSM12	100	100.000	Saimiri_boliviensis_boliviensis
ENSETEG00000008374	LSM12	81	93.671	ENSSHAG00000014914	LSM12	100	93.671	Sarcophilus_harrisii
ENSETEG00000008374	LSM12	100	82.653	ENSSFOG00015020392	lsm12a	100	82.653	Scleropages_formosus
ENSETEG00000008374	LSM12	100	85.714	ENSSFOG00015009612	lsm12	100	85.714	Scleropages_formosus
ENSETEG00000008374	LSM12	100	84.694	ENSSMAG00000008089	lsm12b	100	84.694	Scophthalmus_maximus
ENSETEG00000008374	LSM12	100	85.714	ENSSDUG00000012711	lsm12b	100	85.714	Seriola_dumerili
ENSETEG00000008374	LSM12	100	85.714	ENSSLDG00000007404	lsm12b	100	85.714	Seriola_lalandi_dorsalis
ENSETEG00000008374	LSM12	78	98.693	ENSSARG00000005537	LSM12	100	98.693	Sorex_araneus
ENSETEG00000008374	LSM12	99	94.301	ENSSPUG00000011984	LSM12	99	94.301	Sphenodon_punctatus
ENSETEG00000008374	LSM12	100	85.204	ENSSPAG00000017058	lsm12b	100	85.204	Stegastes_partitus
ENSETEG00000008374	LSM12	100	99.487	ENSSSCG00000032394	LSM12	100	99.487	Sus_scrofa
ENSETEG00000008374	LSM12	100	83.673	ENSTRUG00000007121	lsm12b	100	83.673	Takifugu_rubripes
ENSETEG00000008374	LSM12	100	84.184	ENSTNIG00000014436	lsm12b	100	84.184	Tetraodon_nigroviridis
ENSETEG00000008374	LSM12	100	98.974	ENSTBEG00000012523	-	100	98.974	Tupaia_belangeri
ENSETEG00000008374	LSM12	100	95.897	ENSTBEG00000012392	-	100	95.897	Tupaia_belangeri
ENSETEG00000008374	LSM12	100	99.487	ENSTTRG00000010433	LSM12	100	99.487	Tursiops_truncatus
ENSETEG00000008374	LSM12	100	99.487	ENSUAMG00000006313	LSM12	100	99.487	Ursus_americanus
ENSETEG00000008374	LSM12	81	96.203	ENSUMAG00000012987	LSM12	90	96.203	Ursus_maritimus
ENSETEG00000008374	LSM12	100	93.846	ENSVPAG00000011145	LSM12	100	93.846	Vicugna_pacos
ENSETEG00000008374	LSM12	100	99.487	ENSVVUG00000017581	LSM12	100	99.487	Vulpes_vulpes
ENSETEG00000008374	LSM12	82	65.000	ENSXETG00000003371	lsm12	77	65.000	Xenopus_tropicalis
ENSETEG00000008374	LSM12	100	83.673	ENSXCOG00000003994	lsm12b	100	83.673	Xiphophorus_couchianus
ENSETEG00000008374	LSM12	100	83.673	ENSXMAG00000020950	lsm12b	100	83.673	Xiphophorus_maculatus