EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSETEG00000012788 (Gene tree)
Gene ID: -
Gene Symbol: LSM7
Alias: YNL147W
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Echinops_telfairi
Status: putative
Strand: Minus strand
Length: 3961 bases
Position: chrGeneScaffold_3379:5147-9107
Accession: 20470
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSETEP00000010369	LSM	PF01423.22	6.6e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSETET00000012788	LSM7-201	309	-	ENSETEP00000010369	102 (aa)	-	UPI0000E43103

Gene Model

Click here to download ENSETEG00000012788's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSETEG00000012788's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSETEG00000012788	LSM7	73	35.526	ENSETEG00000011594	LSM8	73	35.526
ENSETEG00000012788	LSM7	70	35.211	ENSETEG00000010028	-	84	35.211

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSETEG00000012788	LSM7	99	97.030	ENSG00000130332	LSM7	100	97.959	Homo_sapiens
ENSETEG00000012788	LSM7	93	92.632	ENSAPOG00000015573	lsm7	82	92.632	Acanthochromis_polyacanthus
ENSETEG00000012788	LSM7	100	96.078	ENSAMEG00000005484	LSM7	99	96.078	Ailuropoda_melanoleuca
ENSETEG00000012788	LSM7	95	92.784	ENSACIG00000006498	lsm7	77	92.784	Amphilophus_citrinellus
ENSETEG00000012788	LSM7	100	91.176	ENSAOCG00000001077	lsm7	93	91.176	Amphiprion_ocellaris
ENSETEG00000012788	LSM7	100	92.157	ENSAPEG00000024447	lsm7	93	91.176	Amphiprion_percula
ENSETEG00000012788	LSM7	99	92.079	ENSAPEG00000000694	lsm7	98	92.079	Amphiprion_percula
ENSETEG00000012788	LSM7	99	92.079	ENSATEG00000008557	lsm7	98	92.079	Anabas_testudineus
ENSETEG00000012788	LSM7	99	97.030	ENSANAG00000037196	-	98	97.030	Aotus_nancymaae
ENSETEG00000012788	LSM7	99	88.119	ENSANAG00000022222	-	98	88.119	Aotus_nancymaae
ENSETEG00000012788	LSM7	99	91.089	ENSACLG00000021021	lsm7	98	91.089	Astatotilapia_calliptera
ENSETEG00000012788	LSM7	99	92.079	ENSAMXG00000037622	lsm7	98	92.079	Astyanax_mexicanus
ENSETEG00000012788	LSM7	99	97.030	ENSBTAG00000004521	LSM7	98	97.030	Bos_taurus
ENSETEG00000012788	LSM7	99	54.455	WBGene00003081	lsm-7	97	54.455	Caenorhabditis_elegans
ENSETEG00000012788	LSM7	53	96.296	ENSCJAG00000039713	-	66	96.296	Callithrix_jacchus
ENSETEG00000012788	LSM7	100	96.078	ENSCAFG00000019409	LSM7	99	96.078	Canis_familiaris
ENSETEG00000012788	LSM7	100	96.078	ENSCAFG00020018168	LSM7	75	95.098	Canis_lupus_dingo
ENSETEG00000012788	LSM7	100	97.059	ENSCHIG00000023663	LSM7	99	97.059	Capra_hircus
ENSETEG00000012788	LSM7	70	98.592	ENSCAPG00000014534	LSM7	100	98.592	Cavia_aperea
ENSETEG00000012788	LSM7	99	97.030	ENSCPOG00000014025	LSM7	100	97.030	Cavia_porcellus
ENSETEG00000012788	LSM7	99	97.030	ENSCCAG00000035456	LSM7	99	97.030	Cebus_capucinus
ENSETEG00000012788	LSM7	99	97.030	ENSCATG00000023543	LSM7	98	97.030	Cercocebus_atys
ENSETEG00000012788	LSM7	99	97.030	ENSCLAG00000011635	LSM7	98	97.030	Chinchilla_lanigera
ENSETEG00000012788	LSM7	99	97.030	ENSCSAG00000011599	LSM7	98	97.030	Chlorocebus_sabaeus
ENSETEG00000012788	LSM7	68	97.101	ENSCPBG00000021317	LSM7	73	97.101	Chrysemys_picta_bellii
ENSETEG00000012788	LSM7	94	79.167	ENSCING00000022134	-	97	79.167	Ciona_intestinalis
ENSETEG00000012788	LSM7	99	97.030	ENSCANG00000035525	LSM7	98	97.030	Colobus_angolensis_palliatus
ENSETEG00000012788	LSM7	88	87.778	ENSCGRG00001016005	-	92	87.778	Cricetulus_griseus_chok1gshd
ENSETEG00000012788	LSM7	99	96.040	ENSCGRG00001000807	-	98	96.040	Cricetulus_griseus_chok1gshd
ENSETEG00000012788	LSM7	100	96.078	ENSCGRG00000014355	-	98	96.078	Cricetulus_griseus_crigri
ENSETEG00000012788	LSM7	88	87.778	ENSCGRG00000006821	-	92	87.778	Cricetulus_griseus_crigri
ENSETEG00000012788	LSM7	99	92.079	ENSCSEG00000014900	lsm7	86	92.079	Cynoglossus_semilaevis
ENSETEG00000012788	LSM7	99	93.069	ENSCVAG00000021091	lsm7	94	93.069	Cyprinodon_variegatus
ENSETEG00000012788	LSM7	99	92.079	ENSDARG00000058328	lsm7	98	92.079	Danio_rerio
ENSETEG00000012788	LSM7	99	95.050	ENSDORG00000024460	Lsm7	99	95.050	Dipodomys_ordii
ENSETEG00000012788	LSM7	95	74.490	FBgn0261068	LSm7	89	74.490	Drosophila_melanogaster
ENSETEG00000012788	LSM7	81	57.831	ENSEBUG00000010470	-	79	57.831	Eptatretus_burgeri
ENSETEG00000012788	LSM7	100	83.333	ENSEBUG00000016992	lsm7	98	83.333	Eptatretus_burgeri
ENSETEG00000012788	LSM7	99	93.069	ENSECAG00000001440	LSM7	65	93.069	Equus_caballus
ENSETEG00000012788	LSM7	99	96.040	ENSFCAG00000003445	LSM7	98	96.040	Felis_catus
ENSETEG00000012788	LSM7	99	94.059	ENSFALG00000011912	LSM7	100	94.059	Ficedula_albicollis
ENSETEG00000012788	LSM7	94	96.875	ENSFDAG00000007661	LSM7	100	96.875	Fukomys_damarensis
ENSETEG00000012788	LSM7	90	92.391	ENSFHEG00000006349	lsm7	90	93.069	Fundulus_heteroclitus
ENSETEG00000012788	LSM7	100	90.196	ENSGMOG00000013320	lsm7	99	90.196	Gadus_morhua
ENSETEG00000012788	LSM7	99	93.069	ENSGAFG00000013902	lsm7	98	93.069	Gambusia_affinis
ENSETEG00000012788	LSM7	100	91.176	ENSGACG00000010390	lsm7	99	91.176	Gasterosteus_aculeatus
ENSETEG00000012788	LSM7	99	97.030	ENSGGOG00000010172	LSM7	98	97.030	Gorilla_gorilla
ENSETEG00000012788	LSM7	100	91.176	ENSHBUG00000004616	lsm7	98	91.089	Haplochromis_burtoni
ENSETEG00000012788	LSM7	99	97.030	ENSHGLG00000010587	LSM7	98	97.030	Heterocephalus_glaber_female
ENSETEG00000012788	LSM7	99	97.030	ENSHGLG00100000852	LSM7	98	97.030	Heterocephalus_glaber_male
ENSETEG00000012788	LSM7	99	91.089	ENSHCOG00000020252	lsm7	100	91.089	Hippocampus_comes
ENSETEG00000012788	LSM7	99	92.079	ENSIPUG00000024724	lsm7	98	92.079	Ictalurus_punctatus
ENSETEG00000012788	LSM7	100	97.059	ENSSTOG00000028372	LSM7	99	97.030	Ictidomys_tridecemlineatus
ENSETEG00000012788	LSM7	99	95.050	ENSJJAG00000001936	Lsm7	98	95.050	Jaculus_jaculus
ENSETEG00000012788	LSM7	99	93.069	ENSKMAG00000022151	lsm7	98	93.069	Kryptolebias_marmoratus
ENSETEG00000012788	LSM7	99	92.079	ENSLBEG00000005203	lsm7	98	92.079	Labrus_bergylta
ENSETEG00000012788	LSM7	100	95.098	ENSLACG00000015700	LSM7	99	95.098	Latimeria_chalumnae
ENSETEG00000012788	LSM7	100	95.098	ENSLOCG00000004356	lsm7	99	95.098	Lepisosteus_oculatus
ENSETEG00000012788	LSM7	100	97.059	ENSLAFG00000029302	LSM7	99	97.059	Loxodonta_africana
ENSETEG00000012788	LSM7	99	97.030	ENSMFAG00000044572	LSM7	98	97.030	Macaca_fascicularis
ENSETEG00000012788	LSM7	99	97.030	ENSMMUG00000000452	LSM7	99	97.030	Macaca_mulatta
ENSETEG00000012788	LSM7	99	97.030	ENSMNEG00000004393	LSM7	98	97.030	Macaca_nemestrina
ENSETEG00000012788	LSM7	99	97.030	ENSMLEG00000030852	LSM7	100	97.030	Mandrillus_leucophaeus
ENSETEG00000012788	LSM7	99	91.089	ENSMAMG00000005410	lsm7	98	91.089	Mastacembelus_armatus
ENSETEG00000012788	LSM7	99	91.089	ENSMZEG00005028055	lsm7	98	91.089	Maylandia_zebra
ENSETEG00000012788	LSM7	99	95.050	ENSMGAG00000000750	LSM7	87	95.050	Meleagris_gallopavo
ENSETEG00000012788	LSM7	100	96.078	ENSMAUG00000009276	Lsm7	99	96.078	Mesocricetus_auratus
ENSETEG00000012788	LSM7	99	97.030	ENSMICG00000009988	-	98	97.030	Microcebus_murinus
ENSETEG00000012788	LSM7	99	97.030	ENSMICG00000028619	-	98	97.030	Microcebus_murinus
ENSETEG00000012788	LSM7	99	96.040	ENSMOCG00000016925	Lsm7	98	96.040	Microtus_ochrogaster
ENSETEG00000012788	LSM7	99	92.079	ENSMMOG00000019645	lsm7	96	92.079	Mola_mola
ENSETEG00000012788	LSM7	99	96.040	ENSMODG00000004722	LSM7	98	96.040	Monodelphis_domestica
ENSETEG00000012788	LSM7	99	91.089	ENSMALG00000014511	lsm7	78	91.089	Monopterus_albus
ENSETEG00000012788	LSM7	99	94.059	MGP_CAROLIEiJ_G0015607	Lsm7	98	94.059	Mus_caroli
ENSETEG00000012788	LSM7	99	94.059	ENSMUSG00000035215	Lsm7	98	94.059	Mus_musculus
ENSETEG00000012788	LSM7	99	94.059	MGP_PahariEiJ_G0031020	Lsm7	98	94.059	Mus_pahari
ENSETEG00000012788	LSM7	99	94.059	MGP_SPRETEiJ_G0016425	Lsm7	98	94.059	Mus_spretus
ENSETEG00000012788	LSM7	100	96.078	ENSMLUG00000013097	-	99	96.078	Myotis_lucifugus
ENSETEG00000012788	LSM7	99	90.099	ENSMLUG00000024002	-	93	90.099	Myotis_lucifugus
ENSETEG00000012788	LSM7	99	95.050	ENSNGAG00000021637	Lsm7	98	95.050	Nannospalax_galili
ENSETEG00000012788	LSM7	92	91.489	ENSNBRG00000001237	-	81	91.089	Neolamprologus_brichardi
ENSETEG00000012788	LSM7	100	91.176	ENSNBRG00000015770	lsm7	88	91.176	Neolamprologus_brichardi
ENSETEG00000012788	LSM7	99	97.030	ENSNLEG00000002265	LSM7	98	97.030	Nomascus_leucogenys
ENSETEG00000012788	LSM7	99	97.030	ENSODEG00000013590	-	98	97.030	Octodon_degus
ENSETEG00000012788	LSM7	99	91.089	ENSODEG00000018769	-	98	91.089	Octodon_degus
ENSETEG00000012788	LSM7	99	76.238	ENSODEG00000008190	-	98	76.238	Octodon_degus
ENSETEG00000012788	LSM7	99	91.089	ENSONIG00000001801	lsm7	87	91.089	Oreochromis_niloticus
ENSETEG00000012788	LSM7	100	92.157	ENSORLG00000023951	lsm7	98	92.079	Oryzias_latipes
ENSETEG00000012788	LSM7	100	92.157	ENSORLG00020022226	lsm7	98	92.079	Oryzias_latipes_hni
ENSETEG00000012788	LSM7	100	92.157	ENSORLG00015020044	lsm7	94	91.176	Oryzias_latipes_hsok
ENSETEG00000012788	LSM7	100	91.176	ENSOMEG00000012806	lsm7	98	92.079	Oryzias_melastigma
ENSETEG00000012788	LSM7	99	87.129	ENSOGAG00000024373	-	98	87.129	Otolemur_garnettii
ENSETEG00000012788	LSM7	100	96.078	ENSOGAG00000000144	-	100	96.078	Otolemur_garnettii
ENSETEG00000012788	LSM7	100	97.059	ENSOARG00000014013	LSM7	99	97.059	Ovis_aries
ENSETEG00000012788	LSM7	99	97.030	ENSPPAG00000026500	LSM7	98	97.030	Pan_paniscus
ENSETEG00000012788	LSM7	99	96.040	ENSPPRG00000008624	LSM7	98	96.040	Panthera_pardus
ENSETEG00000012788	LSM7	99	96.040	ENSPTIG00000016252	LSM7	98	96.040	Panthera_tigris_altaica
ENSETEG00000012788	LSM7	99	97.030	ENSPTRG00000010233	LSM7	98	97.030	Pan_troglodytes
ENSETEG00000012788	LSM7	99	97.030	ENSPANG00000020668	LSM7	98	97.030	Papio_anubis
ENSETEG00000012788	LSM7	99	94.059	ENSPKIG00000011325	lsm7	98	94.059	Paramormyrops_kingsleyae
ENSETEG00000012788	LSM7	99	95.050	ENSPSIG00000017149	LSM7	89	95.050	Pelodiscus_sinensis
ENSETEG00000012788	LSM7	99	92.079	ENSPMGG00000006498	lsm7	98	92.079	Periophthalmus_magnuspinnatus
ENSETEG00000012788	LSM7	99	96.040	ENSPCIG00000030454	LSM7	99	96.040	Phascolarctos_cinereus
ENSETEG00000012788	LSM7	100	93.137	ENSPFOG00000012467	lsm7	90	93.137	Poecilia_formosa
ENSETEG00000012788	LSM7	100	93.137	ENSPLAG00000000252	lsm7	94	93.069	Poecilia_latipinna
ENSETEG00000012788	LSM7	100	93.137	ENSPMEG00000000587	lsm7	94	93.069	Poecilia_mexicana
ENSETEG00000012788	LSM7	76	73.418	ENSPREG00000016718	lsm7	63	73.418	Poecilia_reticulata
ENSETEG00000012788	LSM7	99	74.257	ENSPPYG00000009348	-	67	74.257	Pongo_abelii
ENSETEG00000012788	LSM7	99	97.030	ENSPCOG00000017177	LSM7	99	97.030	Propithecus_coquereli
ENSETEG00000012788	LSM7	99	91.089	ENSPNYG00000006938	lsm7	98	91.089	Pundamilia_nyererei
ENSETEG00000012788	LSM7	99	92.079	ENSPNAG00000010141	lsm7	99	92.079	Pygocentrus_nattereri
ENSETEG00000012788	LSM7	99	95.050	ENSRNOG00000019552	Lsm7	98	95.050	Rattus_norvegicus
ENSETEG00000012788	LSM7	99	97.030	ENSRBIG00000035978	LSM7	98	97.030	Rhinopithecus_bieti
ENSETEG00000012788	LSM7	99	97.030	ENSRROG00000034044	LSM7	98	97.030	Rhinopithecus_roxellana
ENSETEG00000012788	LSM7	84	47.191	YNL147W	-	77	47.191	Saccharomyces_cerevisiae
ENSETEG00000012788	LSM7	99	97.030	ENSSBOG00000034899	LSM7	98	97.030	Saimiri_boliviensis_boliviensis
ENSETEG00000012788	LSM7	99	92.079	ENSSFOG00015006728	lsm7	98	92.079	Scleropages_formosus
ENSETEG00000012788	LSM7	100	92.157	ENSSMAG00000004195	lsm7	93	92.157	Scophthalmus_maximus
ENSETEG00000012788	LSM7	99	92.079	ENSSDUG00000001863	lsm7	98	92.079	Seriola_dumerili
ENSETEG00000012788	LSM7	99	92.079	ENSSLDG00000016339	lsm7	98	92.079	Seriola_lalandi_dorsalis
ENSETEG00000012788	LSM7	99	92.079	ENSSPAG00000015221	lsm7	98	92.079	Stegastes_partitus
ENSETEG00000012788	LSM7	99	97.030	ENSSSCG00000013463	LSM7	99	97.030	Sus_scrofa
ENSETEG00000012788	LSM7	99	94.059	ENSTGUG00000000067	LSM7	100	94.059	Taeniopygia_guttata
ENSETEG00000012788	LSM7	99	92.079	ENSTRUG00000022913	lsm7	98	92.079	Takifugu_rubripes
ENSETEG00000012788	LSM7	99	92.079	ENSTNIG00000015525	lsm7	98	92.079	Tetraodon_nigroviridis
ENSETEG00000012788	LSM7	69	85.714	ENSTBEG00000016602	LSM7	100	85.714	Tupaia_belangeri
ENSETEG00000012788	LSM7	100	96.078	ENSUAMG00000000912	LSM7	85	96.078	Ursus_americanus
ENSETEG00000012788	LSM7	100	95.098	ENSUMAG00000006556	LSM7	80	95.098	Ursus_maritimus
ENSETEG00000012788	LSM7	70	97.183	ENSVVUG00000002640	LSM7	65	97.183	Vulpes_vulpes
ENSETEG00000012788	LSM7	99	92.079	ENSXETG00000022166	lsm7	100	92.079	Xenopus_tropicalis
ENSETEG00000012788	LSM7	99	93.069	ENSXCOG00000002572	lsm7	99	93.069	Xiphophorus_couchianus
ENSETEG00000012788	LSM7	100	93.137	ENSXMAG00000018630	lsm7	98	93.069	Xiphophorus_maculatus