EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFALG00000000848 (Gene tree)
Gene ID: -
Gene Symbol: TNRC6C
Alias: FLJ20015|KIAA1582
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 38821 bases
Position: chrJH603241.1:2026920-2065740
Accession: 29318
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000000875	Ago_hook	PF10427.9	3.4e-20	1	1
ENSFALP00000000875	RRM_1	PF00076.22	0.00013	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000000880	TNRC6C-201	8004	-	ENSFALP00000000875	1752 (aa)	-	U3JDM1

Gene Model

Click here to download ENSFALG00000000848's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000000848's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFALG00000000848	TNRC6C	93	35.860	ENSFALG00000012195	TNRC6B	84	37.898
ENSFALG00000000848	TNRC6C	99	44.029	ENSFALG00000003757	TNRC6A	84	44.146

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000000848	TNRC6C	100	86.338	ENSG00000078687	TNRC6C	100	90.526	Homo_sapiens
ENSFALG00000000848	TNRC6C	81	53.247	ENSAPOG00000019749	tnrc6c1	92	49.235	Acanthochromis_polyacanthus
ENSFALG00000000848	TNRC6C	100	85.236	ENSAMEG00000013756	TNRC6C	96	85.520	Ailuropoda_melanoleuca
ENSFALG00000000848	TNRC6C	94	50.058	ENSACIG00000008075	tnrc6c1	78	54.478	Amphilophus_citrinellus
ENSFALG00000000848	TNRC6C	79	65.762	ENSAOCG00000023968	tnrc6c1	92	50.900	Amphiprion_ocellaris
ENSFALG00000000848	TNRC6C	81	53.417	ENSAPEG00000009020	tnrc6c1	92	50.846	Amphiprion_percula
ENSFALG00000000848	TNRC6C	100	93.871	ENSAPLG00000005456	TNRC6C	90	93.871	Anas_platyrhynchos
ENSFALG00000000848	TNRC6C	100	90.894	ENSACAG00000016198	TNRC6C	88	91.007	Anolis_carolinensis
ENSFALG00000000848	TNRC6C	100	85.432	ENSANAG00000021554	TNRC6C	100	83.918	Aotus_nancymaae
ENSFALG00000000848	TNRC6C	100	48.994	ENSACLG00000000424	tnrc6c1	78	53.557	Astatotilapia_calliptera
ENSFALG00000000848	TNRC6C	100	82.653	ENSBTAG00000018658	TNRC6C	100	83.503	Bos_taurus
ENSFALG00000000848	TNRC6C	100	85.263	ENSCJAG00000019431	TNRC6C	100	83.692	Callithrix_jacchus
ENSFALG00000000848	TNRC6C	100	85.868	ENSCAFG00000005224	TNRC6C	96	79.063	Canis_familiaris
ENSFALG00000000848	TNRC6C	100	85.367	ENSCAFG00020006661	TNRC6C	100	82.860	Canis_lupus_dingo
ENSFALG00000000848	TNRC6C	100	82.112	ENSCHIG00000026004	TNRC6C	100	81.301	Capra_hircus
ENSFALG00000000848	TNRC6C	100	86.833	ENSTSYG00000005403	TNRC6C	100	87.514	Carlito_syrichta
ENSFALG00000000848	TNRC6C	100	77.401	ENSCAPG00000007307	TNRC6C	89	77.514	Cavia_aperea
ENSFALG00000000848	TNRC6C	100	81.952	ENSCPOG00000000467	TNRC6C	97	82.350	Cavia_porcellus
ENSFALG00000000848	TNRC6C	100	86.103	ENSCCAG00000030524	TNRC6C	100	86.784	Cebus_capucinus
ENSFALG00000000848	TNRC6C	100	86.330	ENSCATG00000033135	TNRC6C	100	87.011	Cercocebus_atys
ENSFALG00000000848	TNRC6C	100	83.598	ENSCLAG00000011139	TNRC6C	89	83.825	Chinchilla_lanigera
ENSFALG00000000848	TNRC6C	100	86.330	ENSCSAG00000005167	TNRC6C	89	87.011	Chlorocebus_sabaeus
ENSFALG00000000848	TNRC6C	76	84.034	ENSCHOG00000000088	TNRC6C	72	84.034	Choloepus_hoffmanni
ENSFALG00000000848	TNRC6C	100	89.983	ENSCPBG00000027960	TNRC6C	100	89.932	Chrysemys_picta_bellii
ENSFALG00000000848	TNRC6C	100	86.047	ENSCANG00000041771	TNRC6C	100	86.784	Colobus_angolensis_palliatus
ENSFALG00000000848	TNRC6C	100	81.366	ENSCGRG00001022686	Tnrc6c	100	80.823	Cricetulus_griseus_chok1gshd
ENSFALG00000000848	TNRC6C	100	81.736	ENSCGRG00000018041	Tnrc6c	100	80.823	Cricetulus_griseus_crigri
ENSFALG00000000848	TNRC6C	81	51.487	ENSCSEG00000012744	tnrc6c1	74	51.790	Cynoglossus_semilaevis
ENSFALG00000000848	TNRC6C	94	55.338	ENSDARG00000076847	tnrc6c1	96	55.901	Danio_rerio
ENSFALG00000000848	TNRC6C	100	85.828	ENSDNOG00000003247	TNRC6C	91	86.451	Dasypus_novemcinctus
ENSFALG00000000848	TNRC6C	100	78.418	ENSDORG00000004558	Tnrc6c	100	79.209	Dipodomys_ordii
ENSFALG00000000848	TNRC6C	90	75.068	ENSETEG00000005527	TNRC6C	87	74.521	Echinops_telfairi
ENSFALG00000000848	TNRC6C	100	83.986	ENSEASG00005004799	TNRC6C	100	83.930	Equus_asinus_asinus
ENSFALG00000000848	TNRC6C	100	85.860	ENSECAG00000012486	TNRC6C	90	85.520	Equus_caballus
ENSFALG00000000848	TNRC6C	96	87.061	ENSEEUG00000010008	TNRC6C	93	86.876	Erinaceus_europaeus
ENSFALG00000000848	TNRC6C	100	83.916	ENSFCAG00000028358	TNRC6C	100	82.117	Felis_catus
ENSFALG00000000848	TNRC6C	100	83.314	ENSFDAG00000010368	TNRC6C	97	83.712	Fukomys_damarensis
ENSFALG00000000848	TNRC6C	94	49.548	ENSFHEG00000002936	tnrc6c1	92	49.534	Fundulus_heteroclitus
ENSFALG00000000848	TNRC6C	100	95.496	ENSGALG00000001725	TNRC6C	100	93.273	Gallus_gallus
ENSFALG00000000848	TNRC6C	100	49.361	ENSGAFG00000019019	tnrc6c1	83	52.844	Gambusia_affinis
ENSFALG00000000848	TNRC6C	78	52.056	ENSGACG00000012320	tnrc6c1	86	48.177	Gasterosteus_aculeatus
ENSFALG00000000848	TNRC6C	100	91.643	ENSGAGG00000022043	TNRC6C	96	91.927	Gopherus_agassizii
ENSFALG00000000848	TNRC6C	100	86.111	ENSGGOG00000011304	TNRC6C	100	86.217	Gorilla_gorilla
ENSFALG00000000848	TNRC6C	100	49.317	ENSHBUG00000010846	tnrc6c1	89	53.924	Haplochromis_burtoni
ENSFALG00000000848	TNRC6C	100	83.258	ENSHGLG00000004809	TNRC6C	89	83.485	Heterocephalus_glaber_female
ENSFALG00000000848	TNRC6C	100	82.712	ENSHGLG00100012597	TNRC6C	89	82.938	Heterocephalus_glaber_male
ENSFALG00000000848	TNRC6C	100	51.561	ENSIPUG00000000818	tnrc6c1	89	51.888	Ictalurus_punctatus
ENSFALG00000000848	TNRC6C	100	82.426	ENSSTOG00000009101	TNRC6C	97	82.823	Ictidomys_tridecemlineatus
ENSFALG00000000848	TNRC6C	100	80.971	ENSJJAG00000017055	Tnrc6c	89	80.858	Jaculus_jaculus
ENSFALG00000000848	TNRC6C	94	50.766	ENSKMAG00000021023	tnrc6c1	97	49.656	Kryptolebias_marmoratus
ENSFALG00000000848	TNRC6C	94	80.851	ENSLACG00000015283	TNRC6C	93	80.851	Latimeria_chalumnae
ENSFALG00000000848	TNRC6C	99	55.987	ENSLOCG00000013377	tnrc6c1	89	56.450	Lepisosteus_oculatus
ENSFALG00000000848	TNRC6C	100	83.918	ENSLAFG00000011122	TNRC6C	96	82.520	Loxodonta_africana
ENSFALG00000000848	TNRC6C	100	86.387	ENSMFAG00000043943	TNRC6C	100	87.067	Macaca_fascicularis
ENSFALG00000000848	TNRC6C	100	86.387	ENSMMUG00000011924	TNRC6C	100	84.428	Macaca_mulatta
ENSFALG00000000848	TNRC6C	100	85.997	ENSMNEG00000030405	TNRC6C	100	84.428	Macaca_nemestrina
ENSFALG00000000848	TNRC6C	100	86.387	ENSMLEG00000033436	TNRC6C	100	87.067	Mandrillus_leucophaeus
ENSFALG00000000848	TNRC6C	95	53.935	ENSMAMG00000023613	tnrc6c1	100	50.300	Mastacembelus_armatus
ENSFALG00000000848	TNRC6C	100	48.994	ENSMZEG00005010920	tnrc6c1	78	53.557	Maylandia_zebra
ENSFALG00000000848	TNRC6C	100	86.572	ENSMGAG00000003906	TNRC6C	90	86.338	Meleagris_gallopavo
ENSFALG00000000848	TNRC6C	100	81.310	ENSMAUG00000021618	Tnrc6c	100	81.423	Mesocricetus_auratus
ENSFALG00000000848	TNRC6C	100	86.549	ENSMICG00000003952	TNRC6C	100	87.174	Microcebus_murinus
ENSFALG00000000848	TNRC6C	100	83.154	ENSMOCG00000015879	Tnrc6c	97	83.324	Microtus_ochrogaster
ENSFALG00000000848	TNRC6C	78	53.686	ENSMMOG00000005203	tnrc6c1	97	49.106	Mola_mola
ENSFALG00000000848	TNRC6C	100	84.997	ENSMODG00000001785	TNRC6C	89	84.320	Monodelphis_domestica
ENSFALG00000000848	TNRC6C	100	82.643	MGP_CAROLIEiJ_G0017465	Tnrc6c	97	82.813	Mus_caroli
ENSFALG00000000848	TNRC6C	100	82.303	ENSMUSG00000025571	Tnrc6c	97	82.473	Mus_musculus
ENSFALG00000000848	TNRC6C	100	82.587	MGP_PahariEiJ_G0018593	Tnrc6c	97	82.757	Mus_pahari
ENSFALG00000000848	TNRC6C	100	82.360	MGP_SPRETEiJ_G0018309	Tnrc6c	97	82.530	Mus_spretus
ENSFALG00000000848	TNRC6C	100	83.466	ENSMPUG00000013348	TNRC6C	88	83.580	Mustela_putorius_furo
ENSFALG00000000848	TNRC6C	100	78.470	ENSMLUG00000014431	TNRC6C	88	79.150	Myotis_lucifugus
ENSFALG00000000848	TNRC6C	100	81.864	ENSNGAG00000012203	Tnrc6c	89	81.921	Nannospalax_galili
ENSFALG00000000848	TNRC6C	100	49.452	ENSNBRG00000005344	tnrc6c1	89	54.410	Neolamprologus_brichardi
ENSFALG00000000848	TNRC6C	100	83.625	ENSNLEG00000000047	TNRC6C	89	84.133	Nomascus_leucogenys
ENSFALG00000000848	TNRC6C	98	79.362	ENSMEUG00000005104	TNRC6C	97	79.536	Notamacropus_eugenii
ENSFALG00000000848	TNRC6C	100	83.371	ENSODEG00000012499	TNRC6C	100	83.825	Octodon_degus
ENSFALG00000000848	TNRC6C	94	49.299	ENSONIG00000002210	tnrc6c1	94	53.936	Oreochromis_niloticus
ENSFALG00000000848	TNRC6C	99	62.015	ENSOANG00000009758	-	83	64.243	Ornithorhynchus_anatinus
ENSFALG00000000848	TNRC6C	82	74.058	ENSOCUG00000006122	TNRC6C	83	73.988	Oryctolagus_cuniculus
ENSFALG00000000848	TNRC6C	92	48.242	ENSORLG00000009837	tnrc6c1	100	68.401	Oryzias_latipes
ENSFALG00000000848	TNRC6C	92	48.944	ENSORLG00020016510	tnrc6c1	83	52.082	Oryzias_latipes_hni
ENSFALG00000000848	TNRC6C	71	44.012	ENSORLG00015000171	tnrc6c1	76	47.232	Oryzias_latipes_hsok
ENSFALG00000000848	TNRC6C	92	49.795	ENSOMEG00000000357	tnrc6c1	94	48.540	Oryzias_melastigma
ENSFALG00000000848	TNRC6C	100	84.847	ENSOGAG00000007197	TNRC6C	100	85.585	Otolemur_garnettii
ENSFALG00000000848	TNRC6C	96	78.897	ENSOARG00000006041	TNRC6C	87	79.668	Ovis_aries
ENSFALG00000000848	TNRC6C	100	86.217	ENSPPAG00000027160	TNRC6C	100	86.897	Pan_paniscus
ENSFALG00000000848	TNRC6C	100	83.860	ENSPPRG00000018881	TNRC6C	100	82.060	Panthera_pardus
ENSFALG00000000848	TNRC6C	91	84.716	ENSPTIG00000008791	TNRC6C	82	84.322	Panthera_tigris_altaica
ENSFALG00000000848	TNRC6C	100	86.217	ENSPTRG00000009699	TNRC6C	100	86.897	Pan_troglodytes
ENSFALG00000000848	TNRC6C	100	85.997	ENSPANG00000019994	TNRC6C	100	84.572	Papio_anubis
ENSFALG00000000848	TNRC6C	96	52.171	ENSPKIG00000005428	tnrc6c1	100	50.815	Paramormyrops_kingsleyae
ENSFALG00000000848	TNRC6C	100	87.280	ENSPSIG00000018069	TNRC6C	97	87.166	Pelodiscus_sinensis
ENSFALG00000000848	TNRC6C	79	58.650	ENSPMGG00000022911	tnrc6c1	97	63.563	Periophthalmus_magnuspinnatus
ENSFALG00000000848	TNRC6C	100	82.270	ENSPEMG00000009785	Tnrc6c	100	80.294	Peromyscus_maniculatus_bairdii
ENSFALG00000000848	TNRC6C	57	84.211	ENSPCIG00000017421	-	99	84.111	Phascolarctos_cinereus
ENSFALG00000000848	TNRC6C	100	48.909	ENSPFOG00000012560	tnrc6c1	96	56.499	Poecilia_formosa
ENSFALG00000000848	TNRC6C	97	50.598	ENSPLAG00000021055	tnrc6c1	97	50.200	Poecilia_latipinna
ENSFALG00000000848	TNRC6C	100	86.387	ENSPPYG00000008679	TNRC6C	88	87.067	Pongo_abelii
ENSFALG00000000848	TNRC6C	88	87.281	ENSPCAG00000012510	TNRC6C	88	87.660	Procavia_capensis
ENSFALG00000000848	TNRC6C	100	86.897	ENSPCOG00000021451	TNRC6C	100	87.578	Propithecus_coquereli
ENSFALG00000000848	TNRC6C	96	88.983	ENSPVAG00000002008	TNRC6C	93	88.983	Pteropus_vampyrus
ENSFALG00000000848	TNRC6C	100	48.584	ENSPNYG00000014477	tnrc6c1	89	53.127	Pundamilia_nyererei
ENSFALG00000000848	TNRC6C	100	82.143	ENSRNOG00000022395	Tnrc6c	100	82.200	Rattus_norvegicus
ENSFALG00000000848	TNRC6C	100	86.387	ENSRBIG00000027777	TNRC6C	100	87.124	Rhinopithecus_bieti
ENSFALG00000000848	TNRC6C	100	86.444	ENSRROG00000042912	TNRC6C	100	87.181	Rhinopithecus_roxellana
ENSFALG00000000848	TNRC6C	100	85.649	ENSSBOG00000023981	TNRC6C	100	86.330	Saimiri_boliviensis_boliviensis
ENSFALG00000000848	TNRC6C	55	89.386	ENSSHAG00000018330	-	100	89.282	Sarcophilus_harrisii
ENSFALG00000000848	TNRC6C	78	57.319	ENSSFOG00015006475	tnrc6c1	92	51.370	Scleropages_formosus
ENSFALG00000000848	TNRC6C	75	55.067	ENSSFOG00015004735	-	99	61.194	Scleropages_formosus
ENSFALG00000000848	TNRC6C	100	46.958	ENSSMAG00000012761	tnrc6c1	99	49.082	Scophthalmus_maximus
ENSFALG00000000848	TNRC6C	94	49.709	ENSSDUG00000002366	tnrc6c1	90	50.564	Seriola_dumerili
ENSFALG00000000848	TNRC6C	94	48.352	ENSSLDG00000025613	tnrc6c1	97	48.904	Seriola_lalandi_dorsalis
ENSFALG00000000848	TNRC6C	91	90.756	ENSSARG00000006816	TNRC6C	88	90.756	Sorex_araneus
ENSFALG00000000848	TNRC6C	83	90.606	ENSSPUG00000007341	TNRC6C	91	90.742	Sphenodon_punctatus
ENSFALG00000000848	TNRC6C	88	53.091	ENSSPAG00000014977	tnrc6c1	89	50.055	Stegastes_partitus
ENSFALG00000000848	TNRC6C	95	87.358	ENSSSCG00000034373	TNRC6C	100	88.655	Sus_scrofa
ENSFALG00000000848	TNRC6C	100	94.881	ENSTGUG00000007733	TNRC6C	97	94.881	Taeniopygia_guttata
ENSFALG00000000848	TNRC6C	80	53.393	ENSTRUG00000011685	tnrc6c1	100	48.647	Takifugu_rubripes
ENSFALG00000000848	TNRC6C	81	52.234	ENSTNIG00000005273	tnrc6c1	100	60.000	Tetraodon_nigroviridis
ENSFALG00000000848	TNRC6C	65	76.423	ENSTBEG00000005046	TNRC6C	95	77.003	Tupaia_belangeri
ENSFALG00000000848	TNRC6C	100	83.059	ENSTTRG00000010828	TNRC6C	97	82.890	Tursiops_truncatus
ENSFALG00000000848	TNRC6C	100	83.616	ENSUMAG00000013614	TNRC6C	90	83.955	Ursus_maritimus
ENSFALG00000000848	TNRC6C	54	71.549	ENSVPAG00000006765	-	99	71.474	Vicugna_pacos
ENSFALG00000000848	TNRC6C	100	83.995	ENSVVUG00000015268	TNRC6C	100	83.768	Vulpes_vulpes
ENSFALG00000000848	TNRC6C	100	74.479	ENSXETG00000019470	tnrc6c	100	74.070	Xenopus_tropicalis
ENSFALG00000000848	TNRC6C	100	49.307	ENSXMAG00000025971	tnrc6c1	83	52.778	Xiphophorus_maculatus