EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFALG00000000851 (Gene tree)
Gene ID: -
Gene Symbol: LSM10
Alias: MGC15749
Full Name: LSM10%2C U7 small nuclear RNA associated
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Minus strand
Length: 1478 bases
Position: chrJH603214.1:3234806-3236283
Accession: 101812924
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000000877	LSM	PF01423.22	1.9e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000000882	LSM10-201	1316	-	ENSFALP00000000877	123 (aa)	XP_005058366	U3JDM3

Gene Model

Click here to download ENSFALG00000000851's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000000851's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFALG00000000851	LSM10	54	34.328	ENSFALG00000002646	SNRPD1	79	32.584

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000000851	LSM10	95	72.650	ENSG00000181817	LSM10	95	72.650	Homo_sapiens
ENSFALG00000000851	LSM10	100	69.919	ENSAMEG00000019854	LSM10	100	69.919	Ailuropoda_melanoleuca
ENSFALG00000000851	LSM10	92	66.372	ENSACIG00000015420	oscp1a	75	66.372	Amphilophus_citrinellus
ENSFALG00000000851	LSM10	93	65.217	ENSAOCG00000014654	-	95	65.217	Amphiprion_ocellaris
ENSFALG00000000851	LSM10	93	65.217	ENSAOCG00000015618	LSM10	95	65.217	Amphiprion_ocellaris
ENSFALG00000000851	LSM10	83	68.627	ENSAOCG00000015607	LSM10	79	68.627	Amphiprion_ocellaris
ENSFALG00000000851	LSM10	93	65.217	ENSAPEG00000021845	-	95	65.217	Amphiprion_percula
ENSFALG00000000851	LSM10	83	68.627	ENSAPEG00000021851	LSM10	79	68.627	Amphiprion_percula
ENSFALG00000000851	LSM10	94	60.345	ENSATEG00000006310	oscp1a	86	60.345	Anabas_testudineus
ENSFALG00000000851	LSM10	100	75.610	ENSACAG00000001231	LSM10	100	75.610	Anolis_carolinensis
ENSFALG00000000851	LSM10	95	71.795	ENSANAG00000031489	-	96	71.795	Aotus_nancymaae
ENSFALG00000000851	LSM10	100	70.732	ENSANAG00000018759	-	100	70.732	Aotus_nancymaae
ENSFALG00000000851	LSM10	93	66.087	ENSACLG00000004728	oscp1a	93	66.087	Astatotilapia_calliptera
ENSFALG00000000851	LSM10	96	63.559	ENSAMXG00000025301	oscp1a	98	63.559	Astyanax_mexicanus
ENSFALG00000000851	LSM10	95	73.504	ENSBTAG00000024096	LSM10	96	73.504	Bos_taurus
ENSFALG00000000851	LSM10	100	69.919	ENSCJAG00000044880	LSM10	100	69.919	Callithrix_jacchus
ENSFALG00000000851	LSM10	100	70.732	ENSCAFG00000003382	LSM10	100	70.732	Canis_familiaris
ENSFALG00000000851	LSM10	100	70.732	ENSCAFG00020008920	LSM10	100	70.732	Canis_lupus_dingo
ENSFALG00000000851	LSM10	95	73.504	ENSCHIG00000009398	LSM10	96	73.504	Capra_hircus
ENSFALG00000000851	LSM10	100	69.919	ENSCAPG00000012567	LSM10	100	69.919	Cavia_aperea
ENSFALG00000000851	LSM10	100	69.919	ENSCPOG00000039302	LSM10	100	69.919	Cavia_porcellus
ENSFALG00000000851	LSM10	100	70.732	ENSCCAG00000018913	-	100	70.732	Cebus_capucinus
ENSFALG00000000851	LSM10	95	70.085	ENSCCAG00000008378	-	95	70.085	Cebus_capucinus
ENSFALG00000000851	LSM10	100	69.106	ENSCATG00000006589	LSM10	100	69.106	Cercocebus_atys
ENSFALG00000000851	LSM10	100	69.919	ENSCLAG00000008633	LSM10	100	69.919	Chinchilla_lanigera
ENSFALG00000000851	LSM10	100	69.106	ENSCSAG00000000134	LSM10	100	69.106	Chlorocebus_sabaeus
ENSFALG00000000851	LSM10	95	71.429	ENSCHOG00000008615	LSM10	95	71.429	Choloepus_hoffmanni
ENSFALG00000000851	LSM10	83	31.373	ENSCSAVG00000001896	-	87	31.373	Ciona_savignyi
ENSFALG00000000851	LSM10	100	69.106	ENSCANG00000019928	LSM10	100	69.106	Colobus_angolensis_palliatus
ENSFALG00000000851	LSM10	93	62.393	ENSCGRG00001022673	-	94	62.393	Cricetulus_griseus_chok1gshd
ENSFALG00000000851	LSM10	98	71.074	ENSCGRG00001004317	-	99	71.074	Cricetulus_griseus_chok1gshd
ENSFALG00000000851	LSM10	93	62.393	ENSCGRG00000015514	-	94	62.393	Cricetulus_griseus_crigri
ENSFALG00000000851	LSM10	98	71.074	ENSCGRG00000014935	-	99	71.074	Cricetulus_griseus_crigri
ENSFALG00000000851	LSM10	93	60.000	ENSCSEG00000010374	oscp1a	77	60.000	Cynoglossus_semilaevis
ENSFALG00000000851	LSM10	93	63.478	ENSCVAG00000001536	oscp1a	87	63.478	Cyprinodon_variegatus
ENSFALG00000000851	LSM10	98	65.289	ENSDARG00000101222	oscp1a	100	65.289	Danio_rerio
ENSFALG00000000851	LSM10	69	67.059	ENSDARG00000109563	CABZ01074453.1	99	67.059	Danio_rerio
ENSFALG00000000851	LSM10	95	74.359	ENSDNOG00000036662	LSM10	95	74.359	Dasypus_novemcinctus
ENSFALG00000000851	LSM10	100	69.106	ENSDORG00000007579	Lsm10	100	69.106	Dipodomys_ordii
ENSFALG00000000851	LSM10	100	70.732	ENSETEG00000005703	LSM10	100	70.732	Echinops_telfairi
ENSFALG00000000851	LSM10	94	52.586	ENSEBUG00000001312	oscp1a	95	52.586	Eptatretus_burgeri
ENSFALG00000000851	LSM10	100	71.545	ENSEASG00005012194	LSM10	100	71.545	Equus_asinus_asinus
ENSFALG00000000851	LSM10	100	71.545	ENSECAG00000005071	LSM10	100	71.545	Equus_caballus
ENSFALG00000000851	LSM10	100	70.732	ENSEEUG00000012032	LSM10	100	70.732	Erinaceus_europaeus
ENSFALG00000000851	LSM10	99	67.213	ENSELUG00000007452	oscp1a	100	67.213	Esox_lucius
ENSFALG00000000851	LSM10	100	69.919	ENSFDAG00000021056	LSM10	100	69.919	Fukomys_damarensis
ENSFALG00000000851	LSM10	88	64.220	ENSFHEG00000001058	oscp1a	94	64.220	Fundulus_heteroclitus
ENSFALG00000000851	LSM10	93	63.478	ENSGMOG00000019832	oscp1a	96	63.478	Gadus_morhua
ENSFALG00000000851	LSM10	100	86.992	ENSGALG00000002127	LSM10	100	86.992	Gallus_gallus
ENSFALG00000000851	LSM10	94	61.345	ENSGAFG00000016445	oscp1a	95	61.345	Gambusia_affinis
ENSFALG00000000851	LSM10	94	61.207	ENSGACG00000002329	oscp1a	95	61.207	Gasterosteus_aculeatus
ENSFALG00000000851	LSM10	100	81.301	ENSGAGG00000024848	LSM10	100	81.301	Gopherus_agassizii
ENSFALG00000000851	LSM10	95	72.650	ENSGGOG00000003556	LSM10	95	72.650	Gorilla_gorilla
ENSFALG00000000851	LSM10	93	66.087	ENSHBUG00000001722	oscp1a	93	66.087	Haplochromis_burtoni
ENSFALG00000000851	LSM10	100	68.293	ENSHGLG00000011625	LSM10	100	68.293	Heterocephalus_glaber_female
ENSFALG00000000851	LSM10	100	68.293	ENSHGLG00100001769	LSM10	100	68.293	Heterocephalus_glaber_male
ENSFALG00000000851	LSM10	85	68.571	ENSIPUG00000005808	oscp1a	91	68.571	Ictalurus_punctatus
ENSFALG00000000851	LSM10	100	70.732	ENSSTOG00000000606	LSM10	100	70.732	Ictidomys_tridecemlineatus
ENSFALG00000000851	LSM10	93	63.478	ENSKMAG00000012143	oscp1a	95	63.478	Kryptolebias_marmoratus
ENSFALG00000000851	LSM10	95	64.103	ENSLBEG00000017764	oscp1a	96	64.103	Labrus_bergylta
ENSFALG00000000851	LSM10	100	65.041	ENSLACG00000015904	LSM10	95	65.041	Latimeria_chalumnae
ENSFALG00000000851	LSM10	96	68.644	ENSLOCG00000018277	oscp1a	97	68.644	Lepisosteus_oculatus
ENSFALG00000000851	LSM10	100	69.106	ENSLAFG00000009600	LSM10	100	69.106	Loxodonta_africana
ENSFALG00000000851	LSM10	100	69.106	ENSMFAG00000009115	LSM10	100	69.106	Macaca_fascicularis
ENSFALG00000000851	LSM10	100	69.106	ENSMMUG00000017338	LSM10	100	69.106	Macaca_mulatta
ENSFALG00000000851	LSM10	100	69.106	ENSMNEG00000020023	LSM10	100	69.106	Macaca_nemestrina
ENSFALG00000000851	LSM10	100	69.106	ENSMLEG00000025150	LSM10	100	69.106	Mandrillus_leucophaeus
ENSFALG00000000851	LSM10	95	62.393	ENSMAMG00000004427	oscp1a	96	62.393	Mastacembelus_armatus
ENSFALG00000000851	LSM10	93	66.087	ENSMZEG00005026307	oscp1a	93	66.087	Maylandia_zebra
ENSFALG00000000851	LSM10	100	84.553	ENSMGAG00000015707	LSM10	100	84.553	Meleagris_gallopavo
ENSFALG00000000851	LSM10	95	74.359	ENSMAUG00000016624	Lsm10	96	74.359	Mesocricetus_auratus
ENSFALG00000000851	LSM10	95	72.650	ENSMOCG00000021943	Lsm10	96	72.650	Microtus_ochrogaster
ENSFALG00000000851	LSM10	98	64.463	ENSMMOG00000013597	oscp1a	90	64.463	Mola_mola
ENSFALG00000000851	LSM10	100	78.049	ENSMODG00000023328	LSM10	100	78.049	Monodelphis_domestica
ENSFALG00000000851	LSM10	55	60.294	ENSMALG00000012661	oscp1a	54	60.294	Monopterus_albus
ENSFALG00000000851	LSM10	95	72.650	MGP_CAROLIEiJ_G0026467	Lsm10	100	73.118	Mus_caroli
ENSFALG00000000851	LSM10	95	72.650	ENSMUSG00000050188	Lsm10	100	73.118	Mus_musculus
ENSFALG00000000851	LSM10	95	72.650	MGP_PahariEiJ_G0028798	Lsm10	100	73.118	Mus_pahari
ENSFALG00000000851	LSM10	95	72.650	MGP_SPRETEiJ_G0027446	Lsm10	100	73.118	Mus_spretus
ENSFALG00000000851	LSM10	100	70.732	ENSMPUG00000018593	LSM10	100	70.732	Mustela_putorius_furo
ENSFALG00000000851	LSM10	100	69.919	ENSMLUG00000023895	LSM10	100	69.919	Myotis_lucifugus
ENSFALG00000000851	LSM10	100	68.293	ENSNGAG00000015011	Lsm10	100	68.293	Nannospalax_galili
ENSFALG00000000851	LSM10	94	64.655	ENSNBRG00000014306	oscp1a	94	64.655	Neolamprologus_brichardi
ENSFALG00000000851	LSM10	95	72.650	ENSNLEG00000033754	LSM10	95	72.650	Nomascus_leucogenys
ENSFALG00000000851	LSM10	100	78.049	ENSMEUG00000006313	LSM10	100	78.049	Notamacropus_eugenii
ENSFALG00000000851	LSM10	100	72.358	ENSOPRG00000001699	LSM10	100	72.358	Ochotona_princeps
ENSFALG00000000851	LSM10	100	69.919	ENSODEG00000019161	LSM10	100	69.919	Octodon_degus
ENSFALG00000000851	LSM10	95	64.957	ENSONIG00000020904	oscp1a	96	64.957	Oreochromis_niloticus
ENSFALG00000000851	LSM10	100	73.171	ENSOANG00000002066	LSM10	100	73.171	Ornithorhynchus_anatinus
ENSFALG00000000851	LSM10	100	71.545	ENSOCUG00000005333	LSM10	100	71.545	Oryctolagus_cuniculus
ENSFALG00000000851	LSM10	93	65.217	ENSORLG00000009504	oscp1a	95	65.217	Oryzias_latipes
ENSFALG00000000851	LSM10	93	65.217	ENSORLG00020016201	oscp1a	95	65.217	Oryzias_latipes_hni
ENSFALG00000000851	LSM10	93	64.348	ENSORLG00015007794	oscp1a	95	64.348	Oryzias_latipes_hsok
ENSFALG00000000851	LSM10	100	69.919	ENSOGAG00000002653	LSM10	100	69.919	Otolemur_garnettii
ENSFALG00000000851	LSM10	95	73.504	ENSOARG00000009596	LSM10	96	73.504	Ovis_aries
ENSFALG00000000851	LSM10	95	72.650	ENSPPAG00000023465	LSM10	95	72.650	Pan_paniscus
ENSFALG00000000851	LSM10	100	72.358	ENSPPRG00000014619	LSM10	100	72.358	Panthera_pardus
ENSFALG00000000851	LSM10	100	72.358	ENSPTIG00000004613	LSM10	100	72.358	Panthera_tigris_altaica
ENSFALG00000000851	LSM10	95	72.650	ENSPTRG00000000539	LSM10	95	72.650	Pan_troglodytes
ENSFALG00000000851	LSM10	100	69.106	ENSPANG00000023172	LSM10	100	69.106	Papio_anubis
ENSFALG00000000851	LSM10	95	70.085	ENSPKIG00000003728	oscp1a	94	70.085	Paramormyrops_kingsleyae
ENSFALG00000000851	LSM10	100	80.488	ENSPSIG00000000590	LSM10	100	80.488	Pelodiscus_sinensis
ENSFALG00000000851	LSM10	63	67.532	ENSPMGG00000015718	oscp1a	100	67.532	Periophthalmus_magnuspinnatus
ENSFALG00000000851	LSM10	84	80.583	ENSPCIG00000014865	LSM10	76	80.583	Phascolarctos_cinereus
ENSFALG00000000851	LSM10	94	65.517	ENSPFOG00000020490	oscp1a	98	65.517	Poecilia_formosa
ENSFALG00000000851	LSM10	94	65.517	ENSPLAG00000016537	oscp1a	89	65.517	Poecilia_latipinna
ENSFALG00000000851	LSM10	88	68.519	ENSPMEG00000000174	oscp1a	94	68.519	Poecilia_mexicana
ENSFALG00000000851	LSM10	94	64.655	ENSPREG00000009899	oscp1a	89	64.655	Poecilia_reticulata
ENSFALG00000000851	LSM10	95	72.650	ENSPPYG00000001539	LSM10	95	72.650	Pongo_abelii
ENSFALG00000000851	LSM10	95	71.795	ENSPCAG00000002520	LSM10	96	71.795	Procavia_capensis
ENSFALG00000000851	LSM10	100	69.106	ENSPVAG00000008644	LSM10	100	69.106	Pteropus_vampyrus
ENSFALG00000000851	LSM10	93	66.087	ENSPNYG00000003138	oscp1a	93	66.087	Pundamilia_nyererei
ENSFALG00000000851	LSM10	95	64.103	ENSPNAG00000028829	oscp1a	97	64.103	Pygocentrus_nattereri
ENSFALG00000000851	LSM10	95	71.795	ENSRNOG00000025716	Lsm10	96	71.795	Rattus_norvegicus
ENSFALG00000000851	LSM10	100	69.106	ENSRBIG00000001561	LSM10	100	69.106	Rhinopithecus_bieti
ENSFALG00000000851	LSM10	100	69.106	ENSRROG00000011414	LSM10	100	69.106	Rhinopithecus_roxellana
ENSFALG00000000851	LSM10	100	70.732	ENSSBOG00000036413	-	100	70.732	Saimiri_boliviensis_boliviensis
ENSFALG00000000851	LSM10	100	78.862	ENSSHAG00000018056	LSM10	100	78.862	Sarcophilus_harrisii
ENSFALG00000000851	LSM10	98	66.116	ENSSFOG00015019954	lsm10	99	66.116	Scleropages_formosus
ENSFALG00000000851	LSM10	91	63.393	ENSSMAG00000001297	oscp1a	96	63.393	Scophthalmus_maximus
ENSFALG00000000851	LSM10	95	64.407	ENSSDUG00000007090	oscp1a	96	64.407	Seriola_dumerili
ENSFALG00000000851	LSM10	92	63.717	ENSSLDG00000000800	oscp1a	93	63.717	Seriola_lalandi_dorsalis
ENSFALG00000000851	LSM10	87	73.832	ENSSARG00000004211	LSM10	100	70.400	Sorex_araneus
ENSFALG00000000851	LSM10	93	65.789	ENSSPAG00000009229	oscp1a	94	65.789	Stegastes_partitus
ENSFALG00000000851	LSM10	100	69.919	ENSSSCG00000038916	LSM10	100	69.919	Sus_scrofa
ENSFALG00000000851	LSM10	99	95.902	ENSTGUG00000001602	-	100	95.902	Taeniopygia_guttata
ENSFALG00000000851	LSM10	99	96.721	ENSTGUG00000001600	-	100	96.721	Taeniopygia_guttata
ENSFALG00000000851	LSM10	99	58.197	ENSTRUG00000010531	oscp1a	98	58.197	Takifugu_rubripes
ENSFALG00000000851	LSM10	100	69.106	ENSTBEG00000016674	LSM10	100	69.106	Tupaia_belangeri
ENSFALG00000000851	LSM10	100	70.732	ENSUAMG00000020265	LSM10	100	70.732	Ursus_americanus
ENSFALG00000000851	LSM10	100	70.732	ENSUMAG00000001438	LSM10	57	70.732	Ursus_maritimus
ENSFALG00000000851	LSM10	100	70.732	ENSVVUG00000023209	LSM10	100	70.732	Vulpes_vulpes
ENSFALG00000000851	LSM10	100	69.919	ENSXETG00000027631	lsm10	100	69.919	Xenopus_tropicalis
ENSFALG00000000851	LSM10	94	66.379	ENSXCOG00000018776	oscp1a	73	66.379	Xiphophorus_couchianus
ENSFALG00000000851	LSM10	88	69.444	ENSXMAG00000019963	oscp1a	86	69.444	Xiphophorus_maculatus