EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFALG00000001214 (Gene tree)
Gene ID: -
Gene Symbol: PUM1
Alias: KIAA0099|PUMH1
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 99848 bases
Position: chrJH603214.1:6133860-6233707
Accession: 101806646
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000001299	PUF	PF00806.19	1.5e-72	1	8
ENSFALP00000001299	PUF	PF00806.19	1.5e-72	2	8
ENSFALP00000001299	PUF	PF00806.19	1.5e-72	3	8
ENSFALP00000001299	PUF	PF00806.19	1.5e-72	4	8
ENSFALP00000001299	PUF	PF00806.19	1.5e-72	5	8
ENSFALP00000001299	PUF	PF00806.19	1.5e-72	6	8
ENSFALP00000001299	PUF	PF00806.19	1.5e-72	7	8
ENSFALP00000001299	PUF	PF00806.19	1.5e-72	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000001306	PUM1-201	3798	XM_005058368	ENSFALP00000001299	1228 (aa)	XP_005058425	U3JEU5

Gene Model

Click here to download ENSFALG00000001214's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000001214's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFALG00000001214	PUM1	87	76.248	ENSFALG00000001759	PUM2	100	76.596

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000001214	PUM1	97	96.231	ENSG00000134644	PUM1	99	98.309	Homo_sapiens
ENSFALG00000001214	PUM1	87	91.566	ENSAPOG00000021632	pum1	100	91.566	Acanthochromis_polyacanthus
ENSFALG00000001214	PUM1	99	94.239	ENSAMEG00000017656	PUM1	99	95.226	Ailuropoda_melanoleuca
ENSFALG00000001214	PUM1	97	74.442	ENSACIG00000021013	pum1	100	76.524	Amphilophus_citrinellus
ENSFALG00000001214	PUM1	87	91.566	ENSAOCG00000003944	pum1	100	91.566	Amphiprion_ocellaris
ENSFALG00000001214	PUM1	87	91.566	ENSAPEG00000014550	pum1	100	91.566	Amphiprion_percula
ENSFALG00000001214	PUM1	87	91.566	ENSATEG00000016004	pum1	100	91.566	Anabas_testudineus
ENSFALG00000001214	PUM1	97	97.404	ENSAPLG00000009351	PUM1	100	97.404	Anas_platyrhynchos
ENSFALG00000001214	PUM1	97	94.152	ENSACAG00000000682	PUM1	98	94.152	Anolis_carolinensis
ENSFALG00000001214	PUM1	97	96.064	ENSANAG00000027865	PUM1	100	98.068	Aotus_nancymaae
ENSFALG00000001214	PUM1	87	76.866	ENSACLG00000019354	pum1	100	79.117	Astatotilapia_calliptera
ENSFALG00000001214	PUM1	97	78.488	ENSAMXG00000020607	pum1	97	79.651	Astyanax_mexicanus
ENSFALG00000001214	PUM1	97	95.980	ENSBTAG00000018979	PUM1	100	99.034	Bos_taurus
ENSFALG00000001214	PUM1	97	96.231	ENSCJAG00000006035	PUM1	100	98.309	Callithrix_jacchus
ENSFALG00000001214	PUM1	97	94.054	ENSCAFG00000011205	PUM1	100	94.054	Canis_familiaris
ENSFALG00000001214	PUM1	88	95.221	ENSCAFG00020024616	PUM1	98	98.551	Canis_lupus_dingo
ENSFALG00000001214	PUM1	97	95.980	ENSCHIG00000012952	PUM1	100	98.551	Capra_hircus
ENSFALG00000001214	PUM1	97	94.891	ENSTSYG00000008868	PUM1	100	96.415	Carlito_syrichta
ENSFALG00000001214	PUM1	97	94.724	ENSCPOG00000031613	PUM1	100	96.168	Cavia_porcellus
ENSFALG00000001214	PUM1	93	98.792	ENSCATG00000017991	PUM1	100	96.539	Cercocebus_atys
ENSFALG00000001214	PUM1	97	94.807	ENSCLAG00000007662	PUM1	100	96.168	Chinchilla_lanigera
ENSFALG00000001214	PUM1	97	93.776	ENSCSAG00000001028	PUM1	100	93.942	Chlorocebus_sabaeus
ENSFALG00000001214	PUM1	91	90.057	ENSCHOG00000010245	PUM1	93	91.761	Choloepus_hoffmanni
ENSFALG00000001214	PUM1	98	96.747	ENSCPBG00000009288	PUM1	100	99.275	Chrysemys_picta_bellii
ENSFALG00000001214	PUM1	97	96.160	ENSCANG00000042606	PUM1	100	98.309	Colobus_angolensis_palliatus
ENSFALG00000001214	PUM1	97	94.054	ENSCGRG00001024949	Pum1	100	96.044	Cricetulus_griseus_chok1gshd
ENSFALG00000001214	PUM1	97	94.054	ENSCGRG00000014197	Pum1	100	96.044	Cricetulus_griseus_crigri
ENSFALG00000001214	PUM1	87	75.760	ENSCSEG00000015981	pum1	100	77.737	Cynoglossus_semilaevis
ENSFALG00000001214	PUM1	97	74.465	ENSCVAG00000007043	pum1	100	76.316	Cyprinodon_variegatus
ENSFALG00000001214	PUM1	97	78.869	ENSDARG00000099256	pum1	100	79.201	Danio_rerio
ENSFALG00000001214	PUM1	97	95.812	ENSDNOG00000010939	PUM1	100	95.729	Dasypus_novemcinctus
ENSFALG00000001214	PUM1	82	97.826	ENSDORG00000001875	Pum1	100	97.826	Dipodomys_ordii
ENSFALG00000001214	PUM1	85	89.709	ENSETEG00000004355	PUM1	87	90.874	Echinops_telfairi
ENSFALG00000001214	PUM1	97	95.896	ENSEASG00005010813	PUM1	100	95.896	Equus_asinus_asinus
ENSFALG00000001214	PUM1	97	94.807	ENSECAG00000021369	PUM1	100	95.812	Equus_caballus
ENSFALG00000001214	PUM1	76	99.333	ENSEEUG00000003871	PUM1	77	99.333	Erinaceus_europaeus
ENSFALG00000001214	PUM1	97	76.128	ENSELUG00000002409	pum1	100	83.558	Esox_lucius
ENSFALG00000001214	PUM1	97	96.315	ENSFCAG00000010374	PUM1	100	99.034	Felis_catus
ENSFALG00000001214	PUM1	97	94.724	ENSFDAG00000011319	PUM1	100	96.044	Fukomys_damarensis
ENSFALG00000001214	PUM1	97	97.655	ENSGALG00000042598	PUM1	100	99.798	Gallus_gallus
ENSFALG00000001214	PUM1	87	88.046	ENSGAFG00000015617	pum1	100	91.084	Gambusia_affinis
ENSFALG00000001214	PUM1	97	74.359	ENSGACG00000005717	pum1	100	75.780	Gasterosteus_aculeatus
ENSFALG00000001214	PUM1	97	96.817	ENSGAGG00000001290	PUM1	100	99.595	Gopherus_agassizii
ENSFALG00000001214	PUM1	97	96.157	ENSGGOG00000011983	PUM1	100	98.309	Gorilla_gorilla
ENSFALG00000001214	PUM1	97	74.547	ENSHBUG00000018718	pum1	100	76.480	Haplochromis_burtoni
ENSFALG00000001214	PUM1	97	94.640	ENSHGLG00000013819	Pum1	100	96.044	Heterocephalus_glaber_female
ENSFALG00000001214	PUM1	97	94.640	ENSHGLG00100008621	Pum1	100	96.044	Heterocephalus_glaber_male
ENSFALG00000001214	PUM1	87	74.954	ENSHCOG00000005149	pum1	100	75.138	Hippocampus_comes
ENSFALG00000001214	PUM1	97	77.667	ENSIPUG00000020421	pum1	100	78.577	Ictalurus_punctatus
ENSFALG00000001214	PUM1	97	95.980	ENSSTOG00000010757	PUM1	100	96.292	Ictidomys_tridecemlineatus
ENSFALG00000001214	PUM1	97	94.724	ENSJJAG00000000530	Pum1	100	95.921	Jaculus_jaculus
ENSFALG00000001214	PUM1	97	74.300	ENSKMAG00000003481	pum1	100	76.151	Kryptolebias_marmoratus
ENSFALG00000001214	PUM1	97	74.092	ENSLBEG00000002527	pum1	100	76.194	Labrus_bergylta
ENSFALG00000001214	PUM1	97	87.345	ENSLACG00000017188	PUM1	99	87.428	Latimeria_chalumnae
ENSFALG00000001214	PUM1	97	87.386	ENSLOCG00000005210	pum1	100	87.562	Lepisosteus_oculatus
ENSFALG00000001214	PUM1	97	94.975	ENSLAFG00000003178	PUM1	100	95.645	Loxodonta_africana
ENSFALG00000001214	PUM1	97	96.141	ENSMFAG00000010291	PUM1	100	98.792	Macaca_fascicularis
ENSFALG00000001214	PUM1	97	94.825	ENSMMUG00000013520	PUM1	100	98.309	Macaca_mulatta
ENSFALG00000001214	PUM1	97	96.147	ENSMNEG00000034639	PUM1	100	98.309	Macaca_nemestrina
ENSFALG00000001214	PUM1	97	96.141	ENSMLEG00000038743	PUM1	100	98.309	Mandrillus_leucophaeus
ENSFALG00000001214	PUM1	97	74.712	ENSMAMG00000011606	pum1	100	76.727	Mastacembelus_armatus
ENSFALG00000001214	PUM1	97	74.547	ENSMZEG00005005834	pum1	100	76.480	Maylandia_zebra
ENSFALG00000001214	PUM1	97	97.494	ENSMGAG00000000724	PUM1	100	97.404	Meleagris_gallopavo
ENSFALG00000001214	PUM1	97	95.896	ENSMAUG00000022090	Pum1	100	96.168	Mesocricetus_auratus
ENSFALG00000001214	PUM1	97	96.147	ENSMICG00000007713	-	100	98.551	Microcebus_murinus
ENSFALG00000001214	PUM1	98	92.295	ENSMICG00000012213	-	100	95.169	Microcebus_murinus
ENSFALG00000001214	PUM1	97	94.221	ENSMOCG00000015463	Pum1	100	96.044	Microtus_ochrogaster
ENSFALG00000001214	PUM1	87	88.276	ENSMMOG00000019817	pum1	100	91.325	Mola_mola
ENSFALG00000001214	PUM1	97	96.405	ENSMODG00000017067	PUM1	100	96.405	Monodelphis_domestica
ENSFALG00000001214	PUM1	97	94.724	MGP_CAROLIEiJ_G0026549	Pum1	100	96.044	Mus_caroli
ENSFALG00000001214	PUM1	97	94.640	ENSMUSG00000028580	Pum1	100	95.921	Mus_musculus
ENSFALG00000001214	PUM1	97	94.640	MGP_PahariEiJ_G0028881	Pum1	100	95.921	Mus_pahari
ENSFALG00000001214	PUM1	97	94.724	MGP_SPRETEiJ_G0027529	Pum1	100	95.921	Mus_spretus
ENSFALG00000001214	PUM1	97	96.147	ENSMPUG00000015454	PUM1	100	96.147	Mustela_putorius_furo
ENSFALG00000001214	PUM1	97	94.724	ENSMLUG00000006490	PUM1	100	95.729	Myotis_lucifugus
ENSFALG00000001214	PUM1	97	94.724	ENSNGAG00000002378	Pum1	100	96.415	Nannospalax_galili
ENSFALG00000001214	PUM1	78	81.327	ENSNBRG00000010689	pum1	100	83.456	Neolamprologus_brichardi
ENSFALG00000001214	PUM1	97	93.734	ENSNLEG00000001151	PUM1	100	95.833	Nomascus_leucogenys
ENSFALG00000001214	PUM1	84	91.371	ENSMEUG00000000976	-	85	91.371	Notamacropus_eugenii
ENSFALG00000001214	PUM1	80	98.131	ENSOPRG00000001776	PUM1	76	98.131	Ochotona_princeps
ENSFALG00000001214	PUM1	97	94.556	ENSODEG00000003465	PUM1	100	96.044	Octodon_degus
ENSFALG00000001214	PUM1	97	75.429	ENSONIG00000002290	pum1	100	76.809	Oreochromis_niloticus
ENSFALG00000001214	PUM1	79	75.813	ENSOANG00000004902	-	100	75.813	Ornithorhynchus_anatinus
ENSFALG00000001214	PUM1	97	94.556	ENSOCUG00000008641	PUM1	99	95.561	Oryctolagus_cuniculus
ENSFALG00000001214	PUM1	97	75.205	ENSORLG00000011482	pum1	100	76.393	Oryzias_latipes
ENSFALG00000001214	PUM1	97	75.287	ENSORLG00020019461	pum1	100	76.393	Oryzias_latipes_hni
ENSFALG00000001214	PUM1	97	75.287	ENSORLG00015011375	pum1	100	76.475	Oryzias_latipes_hsok
ENSFALG00000001214	PUM1	97	92.140	ENSOGAG00000011063	PUM1	100	93.144	Otolemur_garnettii
ENSFALG00000001214	PUM1	93	98.551	ENSOARG00000001899	PUM1	100	98.551	Ovis_aries
ENSFALG00000001214	PUM1	97	96.157	ENSPPAG00000044003	PUM1	100	98.309	Pan_paniscus
ENSFALG00000001214	PUM1	97	95.142	ENSPPRG00000001370	PUM1	100	96.663	Panthera_pardus
ENSFALG00000001214	PUM1	97	94.975	ENSPTIG00000010798	PUM1	100	96.415	Panthera_tigris_altaica
ENSFALG00000001214	PUM1	97	96.157	ENSPTRG00000000453	PUM1	100	98.309	Pan_troglodytes
ENSFALG00000001214	PUM1	97	96.147	ENSPANG00000016338	PUM1	100	98.792	Papio_anubis
ENSFALG00000001214	PUM1	93	93.720	ENSPKIG00000010578	pum1	100	83.300	Paramormyrops_kingsleyae
ENSFALG00000001214	PUM1	97	97.236	ENSPSIG00000014118	PUM1	100	97.236	Pelodiscus_sinensis
ENSFALG00000001214	PUM1	78	81.068	ENSPMGG00000005836	pum1	100	81.796	Periophthalmus_magnuspinnatus
ENSFALG00000001214	PUM1	97	95.896	ENSPEMG00000010009	Pum1	100	96.168	Peromyscus_maniculatus_bairdii
ENSFALG00000001214	PUM1	97	96.154	ENSPCIG00000014151	PUM1	100	99.275	Phascolarctos_cinereus
ENSFALG00000001214	PUM1	92	76.809	ENSPFOG00000007289	pum1	99	82.549	Poecilia_formosa
ENSFALG00000001214	PUM1	93	77.343	ENSPLAG00000007256	pum1	100	78.270	Poecilia_latipinna
ENSFALG00000001214	PUM1	87	77.544	ENSPMEG00000019543	pum1	99	78.408	Poecilia_mexicana
ENSFALG00000001214	PUM1	97	74.794	ENSPREG00000005195	pum1	100	81.107	Poecilia_reticulata
ENSFALG00000001214	PUM1	97	93.186	ENSPPYG00000001621	PUM1	100	93.186	Pongo_abelii
ENSFALG00000001214	PUM1	75	99.074	ENSPCAG00000001979	PUM1	75	99.074	Procavia_capensis
ENSFALG00000001214	PUM1	97	96.147	ENSPCOG00000004398	PUM1	100	98.551	Propithecus_coquereli
ENSFALG00000001214	PUM1	97	92.899	ENSPVAG00000005207	PUM1	97	92.899	Pteropus_vampyrus
ENSFALG00000001214	PUM1	97	74.629	ENSPNYG00000009518	pum1	100	82.169	Pundamilia_nyererei
ENSFALG00000001214	PUM1	97	78.952	ENSPNAG00000026728	pum1	100	80.913	Pygocentrus_nattereri
ENSFALG00000001214	PUM1	97	94.556	ENSRNOG00000011709	Pum1	100	95.561	Rattus_norvegicus
ENSFALG00000001214	PUM1	99	94.224	ENSRBIG00000042521	PUM1	100	98.792	Rhinopithecus_bieti
ENSFALG00000001214	PUM1	97	95.980	ENSRROG00000020156	PUM1	100	98.309	Rhinopithecus_roxellana
ENSFALG00000001214	PUM1	97	96.315	ENSSBOG00000032037	PUM1	100	98.309	Saimiri_boliviensis_boliviensis
ENSFALG00000001214	PUM1	97	96.154	ENSSHAG00000010918	PUM1	100	96.154	Sarcophilus_harrisii
ENSFALG00000001214	PUM1	87	88.506	ENSSMAG00000010918	pum1	100	91.566	Scophthalmus_maximus
ENSFALG00000001214	PUM1	97	74.712	ENSSDUG00000009021	pum1	100	76.891	Seriola_dumerili
ENSFALG00000001214	PUM1	93	76.161	ENSSLDG00000009667	pum1	100	78.785	Seriola_lalandi_dorsalis
ENSFALG00000001214	PUM1	94	93.653	ENSSARG00000003055	PUM1	93	93.653	Sorex_araneus
ENSFALG00000001214	PUM1	97	96.817	ENSSPUG00000006267	PUM1	100	96.817	Sphenodon_punctatus
ENSFALG00000001214	PUM1	87	91.566	ENSSPAG00000016636	pum1	100	91.566	Stegastes_partitus
ENSFALG00000001214	PUM1	97	98.178	ENSSSCG00000003591	PUM1	100	99.034	Sus_scrofa
ENSFALG00000001214	PUM1	97	74.691	ENSTRUG00000013121	pum1	100	83.088	Takifugu_rubripes
ENSFALG00000001214	PUM1	97	74.979	ENSTNIG00000016983	pum1	99	76.917	Tetraodon_nigroviridis
ENSFALG00000001214	PUM1	85	93.902	ENSTBEG00000013810	PUM1	89	93.902	Tupaia_belangeri
ENSFALG00000001214	PUM1	90	96.189	ENSTTRG00000007436	PUM1	90	96.189	Tursiops_truncatus
ENSFALG00000001214	PUM1	96	94.312	ENSUAMG00000018262	-	100	95.413	Ursus_americanus
ENSFALG00000001214	PUM1	93	99.034	ENSUMAG00000009211	PUM1	100	99.034	Ursus_maritimus
ENSFALG00000001214	PUM1	90	97.157	ENSVPAG00000005902	PUM1	92	97.157	Vicugna_pacos
ENSFALG00000001214	PUM1	97	96.315	ENSVVUG00000014631	PUM1	100	99.034	Vulpes_vulpes
ENSFALG00000001214	PUM1	97	87.323	ENSXETG00000012904	pum1	99	87.406	Xenopus_tropicalis
ENSFALG00000001214	PUM1	97	74.135	ENSXMAG00000002945	pum1	100	78.270	Xiphophorus_maculatus