EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFALG00000001569 (Gene tree)
Gene ID: -
Gene Symbol: UPF3B
Alias: HUPF3B|MRX62|RENT3B|UPF3BP1|UPF3BP2|UPF3BP3|UPF3X
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 6600 bases
Position: chrJH603253.1:1755050-1761649
Accession: 20439
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000001636	Smg4_UPF3	PF03467.15	7.9e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000001645	UPF3B-201	1965	-	ENSFALP00000001636	502 (aa)	-	U3JFT2

Gene Model

Click here to download ENSFALG00000001569's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000001569's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000001569	UPF3B	99	63.618	ENSG00000125351	UPF3B	96	73.611	Homo_sapiens
ENSFALG00000001569	UPF3B	99	55.754	ENSAPOG00000012775	upf3b	99	56.548	Acanthochromis_polyacanthus
ENSFALG00000001569	UPF3B	84	50.346	ENSAMEG00000004259	UPF3A	87	44.342	Ailuropoda_melanoleuca
ENSFALG00000001569	UPF3B	99	66.468	ENSAMEG00000000163	UPF3B	99	66.468	Ailuropoda_melanoleuca
ENSFALG00000001569	UPF3B	94	55.509	ENSACIG00000013582	upf3b	94	54.678	Amphilophus_citrinellus
ENSFALG00000001569	UPF3B	99	54.365	ENSAOCG00000000706	upf3b	99	51.190	Amphiprion_ocellaris
ENSFALG00000001569	UPF3B	99	55.754	ENSAPEG00000005545	upf3b	99	56.151	Amphiprion_percula
ENSFALG00000001569	UPF3B	96	56.198	ENSATEG00000018742	upf3b	94	58.281	Anabas_testudineus
ENSFALG00000001569	UPF3B	100	72.727	ENSACAG00000003625	UPF3B	100	73.570	Anolis_carolinensis
ENSFALG00000001569	UPF3B	99	58.847	ENSANAG00000025598	-	99	62.745	Aotus_nancymaae
ENSFALG00000001569	UPF3B	99	65.805	ENSANAG00000021894	-	99	73.944	Aotus_nancymaae
ENSFALG00000001569	UPF3B	56	53.873	ENSANAG00000033169	-	72	61.275	Aotus_nancymaae
ENSFALG00000001569	UPF3B	94	55.765	ENSACLG00000001649	upf3b	97	56.795	Astatotilapia_calliptera
ENSFALG00000001569	UPF3B	56	65.385	ENSAMXG00000000199	upf3b	99	65.157	Astyanax_mexicanus
ENSFALG00000001569	UPF3B	65	72.792	ENSBTAG00000035615	UPF3B	99	73.944	Bos_taurus
ENSFALG00000001569	UPF3B	99	65.408	ENSCJAG00000004975	UPF3B	99	73.592	Callithrix_jacchus
ENSFALG00000001569	UPF3B	90	41.875	ENSCAFG00000006504	UPF3A	95	41.090	Canis_familiaris
ENSFALG00000001569	UPF3B	99	65.606	ENSCAFG00000018426	UPF3B	99	64.833	Canis_familiaris
ENSFALG00000001569	UPF3B	87	43.567	ENSCAFG00020014268	UPF3A	93	41.090	Canis_lupus_dingo
ENSFALG00000001569	UPF3B	99	62.823	ENSCAFG00020004074	UPF3B	99	60.904	Canis_lupus_dingo
ENSFALG00000001569	UPF3B	99	66.004	ENSCHIG00000000247	-	99	66.468	Capra_hircus
ENSFALG00000001569	UPF3B	89	47.439	ENSCHIG00000011454	-	97	43.096	Capra_hircus
ENSFALG00000001569	UPF3B	98	65.992	ENSCHIG00000018011	-	99	73.592	Capra_hircus
ENSFALG00000001569	UPF3B	99	65.408	ENSTSYG00000014690	UPF3B	99	68.966	Carlito_syrichta
ENSFALG00000001569	UPF3B	64	44.253	ENSCCAG00000029813	-	68	60.000	Cebus_capucinus
ENSFALG00000001569	UPF3B	84	48.712	ENSCCAG00000018406	UPF3A	87	42.384	Cebus_capucinus
ENSFALG00000001569	UPF3B	99	63.618	ENSCATG00000017506	UPF3B	99	73.852	Cercocebus_atys
ENSFALG00000001569	UPF3B	69	55.488	ENSCATG00000029733	UPF3A	89	42.981	Cercocebus_atys
ENSFALG00000001569	UPF3B	99	64.752	ENSCLAG00000003260	UPF3B	99	65.149	Chinchilla_lanigera
ENSFALG00000001569	UPF3B	99	63.618	ENSCSAG00000018348	UPF3B	99	65.619	Chlorocebus_sabaeus
ENSFALG00000001569	UPF3B	100	76.238	ENSCPBG00000020685	UPF3B	100	76.832	Chrysemys_picta_bellii
ENSFALG00000001569	UPF3B	67	72.085	ENSCANG00000029220	UPF3B	99	73.852	Colobus_angolensis_palliatus
ENSFALG00000001569	UPF3B	99	60.990	ENSCGRG00001006858	-	99	61.057	Cricetulus_griseus_chok1gshd
ENSFALG00000001569	UPF3B	71	58.496	ENSCGRG00001013643	-	90	58.287	Cricetulus_griseus_chok1gshd
ENSFALG00000001569	UPF3B	88	63.820	ENSCGRG00000007627	Upf3b	99	63.636	Cricetulus_griseus_crigri
ENSFALG00000001569	UPF3B	94	54.717	ENSCSEG00000002046	upf3b	90	56.184	Cynoglossus_semilaevis
ENSFALG00000001569	UPF3B	96	47.303	ENSCVAG00000005030	upf3b	96	48.340	Cyprinodon_variegatus
ENSFALG00000001569	UPF3B	94	53.236	ENSDARG00000000489	upf3b	93	55.532	Danio_rerio
ENSFALG00000001569	UPF3B	99	66.071	ENSDNOG00000008665	UPF3B	99	65.490	Dasypus_novemcinctus
ENSFALG00000001569	UPF3B	99	62.227	ENSDORG00000006077	Upf3b	99	61.886	Dipodomys_ordii
ENSFALG00000001569	UPF3B	100	63.762	ENSEASG00005012919	UPF3B	99	64.427	Equus_asinus_asinus
ENSFALG00000001569	UPF3B	100	63.762	ENSECAG00000016947	UPF3B	99	64.427	Equus_caballus
ENSFALG00000001569	UPF3B	74	56.873	ENSELUG00000020389	upf3b	93	55.061	Esox_lucius
ENSFALG00000001569	UPF3B	83	50.469	ENSFCAG00000014602	UPF3A	82	45.283	Felis_catus
ENSFALG00000001569	UPF3B	99	63.366	ENSFCAG00000004388	UPF3B	99	65.810	Felis_catus
ENSFALG00000001569	UPF3B	99	64.811	ENSFDAG00000018869	UPF3B	99	64.811	Fukomys_damarensis
ENSFALG00000001569	UPF3B	94	53.361	ENSFHEG00000017895	upf3b	93	48.421	Fundulus_heteroclitus
ENSFALG00000001569	UPF3B	94	52.066	ENSGMOG00000001621	upf3b	93	52.479	Gadus_morhua
ENSFALG00000001569	UPF3B	100	85.060	ENSGALG00000008618	UPF3B	100	80.952	Gallus_gallus
ENSFALG00000001569	UPF3B	94	48.626	ENSGAFG00000000829	upf3b	94	49.053	Gambusia_affinis
ENSFALG00000001569	UPF3B	92	55.932	ENSGACG00000017435	upf3b	94	56.367	Gasterosteus_aculeatus
ENSFALG00000001569	UPF3B	100	77.030	ENSGAGG00000001219	UPF3B	100	79.802	Gopherus_agassizii
ENSFALG00000001569	UPF3B	87	37.946	ENSGGOG00000043074	-	68	47.393	Gorilla_gorilla
ENSFALG00000001569	UPF3B	99	63.618	ENSGGOG00000023995	UPF3B	99	73.852	Gorilla_gorilla
ENSFALG00000001569	UPF3B	68	55.128	ENSGGOG00000041219	-	65	49.215	Gorilla_gorilla
ENSFALG00000001569	UPF3B	94	55.765	ENSHBUG00000017393	upf3b	97	56.795	Haplochromis_burtoni
ENSFALG00000001569	UPF3B	86	59.361	ENSHGLG00000011189	-	97	60.046	Heterocephalus_glaber_female
ENSFALG00000001569	UPF3B	99	64.016	ENSHGLG00000019582	-	99	64.215	Heterocephalus_glaber_female
ENSFALG00000001569	UPF3B	99	62.624	ENSHGLG00100002042	-	99	63.022	Heterocephalus_glaber_male
ENSFALG00000001569	UPF3B	86	59.361	ENSHGLG00100001889	-	97	59.589	Heterocephalus_glaber_male
ENSFALG00000001569	UPF3B	99	57.800	ENSHCOG00000017004	upf3b	98	57.600	Hippocampus_comes
ENSFALG00000001569	UPF3B	99	54.617	ENSIPUG00000019249	upf3b	99	55.206	Ictalurus_punctatus
ENSFALG00000001569	UPF3B	99	64.016	ENSSTOG00000001101	UPF3B	99	64.612	Ictidomys_tridecemlineatus
ENSFALG00000001569	UPF3B	99	61.584	ENSJJAG00000000053	Upf3b	99	61.840	Jaculus_jaculus
ENSFALG00000001569	UPF3B	96	54.268	ENSKMAG00000020300	upf3b	97	56.008	Kryptolebias_marmoratus
ENSFALG00000001569	UPF3B	99	52.871	ENSLACG00000008691	UPF3B	99	53.922	Latimeria_chalumnae
ENSFALG00000001569	UPF3B	66	38.824	ENSLACG00000006645	UPF3A	97	37.647	Latimeria_chalumnae
ENSFALG00000001569	UPF3B	62	67.093	ENSLOCG00000015238	upf3b	97	52.977	Lepisosteus_oculatus
ENSFALG00000001569	UPF3B	99	65.209	ENSLAFG00000001267	UPF3B	99	66.071	Loxodonta_africana
ENSFALG00000001569	UPF3B	99	63.419	ENSMFAG00000045414	UPF3B	99	73.852	Macaca_fascicularis
ENSFALG00000001569	UPF3B	76	48.768	ENSMMUG00000007449	UPF3A	97	41.962	Macaca_mulatta
ENSFALG00000001569	UPF3B	99	63.419	ENSMMUG00000020222	UPF3B	99	73.852	Macaca_mulatta
ENSFALG00000001569	UPF3B	99	63.419	ENSMNEG00000039794	UPF3B	99	73.852	Macaca_nemestrina
ENSFALG00000001569	UPF3B	68	55.414	ENSMNEG00000036402	UPF3A	82	43.750	Macaca_nemestrina
ENSFALG00000001569	UPF3B	99	63.618	ENSMLEG00000010999	UPF3B	99	73.852	Mandrillus_leucophaeus
ENSFALG00000001569	UPF3B	68	55.769	ENSMLEG00000014726	UPF3A	98	41.737	Mandrillus_leucophaeus
ENSFALG00000001569	UPF3B	94	55.975	ENSMZEG00005007871	upf3b	97	56.998	Maylandia_zebra
ENSFALG00000001569	UPF3B	81	85.995	ENSMGAG00000007728	UPF3B	99	80.098	Meleagris_gallopavo
ENSFALG00000001569	UPF3B	99	59.802	ENSMAUG00000008705	Upf3b	99	60.470	Mesocricetus_auratus
ENSFALG00000001569	UPF3B	75	69.258	ENSMICG00000001743	UPF3B	99	73.592	Microcebus_murinus
ENSFALG00000001569	UPF3B	99	62.425	ENSMOCG00000017893	Upf3b	99	62.624	Microtus_ochrogaster
ENSFALG00000001569	UPF3B	96	53.131	ENSMMOG00000004183	upf3b	98	54.326	Mola_mola
ENSFALG00000001569	UPF3B	89	75.610	ENSMODG00000010232	UPF3B	100	75.166	Monodelphis_domestica
ENSFALG00000001569	UPF3B	71	56.180	ENSMALG00000008042	upf3b	94	56.133	Monopterus_albus
ENSFALG00000001569	UPF3B	85	47.086	MGP_CAROLIEiJ_G0030848	Upf3a	53	57.589	Mus_caroli
ENSFALG00000001569	UPF3B	99	63.366	MGP_CAROLIEiJ_G0032999	Upf3b	99	62.818	Mus_caroli
ENSFALG00000001569	UPF3B	99	62.574	ENSMUSG00000036572	Upf3b	99	62.622	Mus_musculus
ENSFALG00000001569	UPF3B	85	47.552	ENSMUSG00000038398	Upf3a	52	58.036	Mus_musculus
ENSFALG00000001569	UPF3B	99	62.772	MGP_PahariEiJ_G0031543	Upf3b	99	62.231	Mus_pahari
ENSFALG00000001569	UPF3B	99	62.574	MGP_SPRETEiJ_G0034152	Upf3b	99	62.622	Mus_spretus
ENSFALG00000001569	UPF3B	85	47.086	MGP_SPRETEiJ_G0031958	Upf3a	52	58.036	Mus_spretus
ENSFALG00000001569	UPF3B	98	65.587	ENSMPUG00000001531	UPF3B	99	65.070	Mustela_putorius_furo
ENSFALG00000001569	UPF3B	99	64.215	ENSMLUG00000010821	UPF3B	99	64.881	Myotis_lucifugus
ENSFALG00000001569	UPF3B	99	61.310	ENSNGAG00000008231	Upf3b	99	60.861	Nannospalax_galili
ENSFALG00000001569	UPF3B	69	55.215	ENSNLEG00000007563	UPF3A	89	42.918	Nomascus_leucogenys
ENSFALG00000001569	UPF3B	91	66.812	ENSNLEG00000014897	UPF3B	99	65.226	Nomascus_leucogenys
ENSFALG00000001569	UPF3B	62	94.839	ENSMEUG00000015615	UPF3B	81	94.872	Notamacropus_eugenii
ENSFALG00000001569	UPF3B	99	62.425	ENSODEG00000002186	-	99	62.624	Octodon_degus
ENSFALG00000001569	UPF3B	99	53.267	ENSONIG00000002536	upf3b	98	55.644	Oreochromis_niloticus
ENSFALG00000001569	UPF3B	88	70.222	ENSOANG00000002594	-	100	68.750	Ornithorhynchus_anatinus
ENSFALG00000001569	UPF3B	99	65.805	ENSOCUG00000010213	UPF3B	99	65.805	Oryctolagus_cuniculus
ENSFALG00000001569	UPF3B	94	52.731	ENSORLG00000001026	upf3b	94	55.252	Oryzias_latipes
ENSFALG00000001569	UPF3B	94	52.311	ENSORLG00020003758	upf3b	94	49.686	Oryzias_latipes_hni
ENSFALG00000001569	UPF3B	94	54.298	ENSORLG00015012954	upf3b	94	55.136	Oryzias_latipes_hsok
ENSFALG00000001569	UPF3B	94	54.184	ENSOMEG00000014736	upf3b	97	54.065	Oryzias_melastigma
ENSFALG00000001569	UPF3B	99	62.500	ENSOGAG00000004643	-	99	64.286	Otolemur_garnettii
ENSFALG00000001569	UPF3B	98	60.282	ENSOGAG00000033003	-	100	60.282	Otolemur_garnettii
ENSFALG00000001569	UPF3B	99	65.613	ENSOARG00000016051	-	99	66.075	Ovis_aries
ENSFALG00000001569	UPF3B	89	51.670	ENSOARG00000007869	-	99	50.334	Ovis_aries
ENSFALG00000001569	UPF3B	99	63.618	ENSPPAG00000040390	UPF3B	99	73.852	Pan_paniscus
ENSFALG00000001569	UPF3B	86	48.533	ENSPPAG00000042267	UPF3A	90	43.133	Pan_paniscus
ENSFALG00000001569	UPF3B	99	65.805	ENSPPRG00000023536	UPF3B	99	66.071	Panthera_pardus
ENSFALG00000001569	UPF3B	83	50.469	ENSPPRG00000025062	UPF3A	82	45.047	Panthera_pardus
ENSFALG00000001569	UPF3B	99	61.702	ENSPTIG00000015264	UPF3B	99	73.592	Panthera_tigris_altaica
ENSFALG00000001569	UPF3B	99	63.618	ENSPTRG00000022228	UPF3B	99	73.852	Pan_troglodytes
ENSFALG00000001569	UPF3B	68	55.128	ENSPTRG00000041835	-	66	49.738	Pan_troglodytes
ENSFALG00000001569	UPF3B	86	48.533	ENSPTRG00000006073	UPF3A	89	43.133	Pan_troglodytes
ENSFALG00000001569	UPF3B	68	55.128	ENSPTRG00000041187	-	64	49.738	Pan_troglodytes
ENSFALG00000001569	UPF3B	84	40.596	ENSPTRG00000051640	-	90	35.862	Pan_troglodytes
ENSFALG00000001569	UPF3B	74	52.128	ENSPANG00000004346	UPF3A	89	43.197	Papio_anubis
ENSFALG00000001569	UPF3B	99	63.618	ENSPANG00000000900	UPF3B	99	73.852	Papio_anubis
ENSFALG00000001569	UPF3B	99	54.762	ENSPKIG00000019226	upf3b	93	65.060	Paramormyrops_kingsleyae
ENSFALG00000001569	UPF3B	55	78.648	ENSPSIG00000005833	UPF3B	92	82.437	Pelodiscus_sinensis
ENSFALG00000001569	UPF3B	56	63.475	ENSPMGG00000016067	upf3b	93	67.021	Periophthalmus_magnuspinnatus
ENSFALG00000001569	UPF3B	99	62.451	ENSPEMG00000012352	Upf3b	99	61.523	Peromyscus_maniculatus_bairdii
ENSFALG00000001569	UPF3B	88	74.554	ENSPCIG00000028914	UPF3B	99	68.072	Phascolarctos_cinereus
ENSFALG00000001569	UPF3B	75	56.637	ENSPCIG00000019590	-	66	72.000	Phascolarctos_cinereus
ENSFALG00000001569	UPF3B	94	48.837	ENSPLAG00000019922	upf3b	94	49.263	Poecilia_latipinna
ENSFALG00000001569	UPF3B	94	48.837	ENSPLAG00000005105	upf3b	94	49.263	Poecilia_latipinna
ENSFALG00000001569	UPF3B	51	73.718	ENSPLAG00000011960	upf3a	54	79.570	Poecilia_latipinna
ENSFALG00000001569	UPF3B	51	74.359	ENSPMEG00000000836	upf3a	54	75.000	Poecilia_mexicana
ENSFALG00000001569	UPF3B	94	49.049	ENSPMEG00000023532	upf3b	94	49.474	Poecilia_mexicana
ENSFALG00000001569	UPF3B	67	71.875	ENSPPYG00000020675	-	97	73.611	Pongo_abelii
ENSFALG00000001569	UPF3B	99	66.865	ENSPCAG00000009464	UPF3B	99	67.063	Procavia_capensis
ENSFALG00000001569	UPF3B	99	65.408	ENSPCOG00000021960	UPF3B	99	73.592	Propithecus_coquereli
ENSFALG00000001569	UPF3B	98	56.048	ENSPVAG00000014075	UPF3B	98	56.653	Pteropus_vampyrus
ENSFALG00000001569	UPF3B	94	55.789	ENSPNYG00000009846	upf3b	97	56.823	Pundamilia_nyererei
ENSFALG00000001569	UPF3B	94	55.187	ENSPNAG00000021528	upf3b	95	58.299	Pygocentrus_nattereri
ENSFALG00000001569	UPF3B	99	63.366	ENSRNOG00000039994	Upf3b	99	63.405	Rattus_norvegicus
ENSFALG00000001569	UPF3B	68	55.769	ENSRBIG00000034007	UPF3A	97	41.996	Rhinopithecus_bieti
ENSFALG00000001569	UPF3B	81	66.912	ENSRBIG00000037219	UPF3B	99	66.184	Rhinopithecus_bieti
ENSFALG00000001569	UPF3B	99	63.618	ENSRROG00000041031	UPF3B	99	73.852	Rhinopithecus_roxellana
ENSFALG00000001569	UPF3B	68	55.769	ENSRROG00000012212	UPF3A	84	43.852	Rhinopithecus_roxellana
ENSFALG00000001569	UPF3B	99	66.004	ENSSBOG00000019740	UPF3B	99	73.944	Saimiri_boliviensis_boliviensis
ENSFALG00000001569	UPF3B	99	71.116	ENSSHAG00000008634	UPF3B	100	71.094	Sarcophilus_harrisii
ENSFALG00000001569	UPF3B	99	56.262	ENSSFOG00015005614	upf3b	99	51.479	Scleropages_formosus
ENSFALG00000001569	UPF3B	93	56.421	ENSSMAG00000012913	upf3b	92	56.842	Scophthalmus_maximus
ENSFALG00000001569	UPF3B	58	73.620	ENSSDUG00000009680	upf3a	57	77.419	Seriola_dumerili
ENSFALG00000001569	UPF3B	94	56.394	ENSSDUG00000005682	upf3b	97	56.998	Seriola_dumerili
ENSFALG00000001569	UPF3B	96	55.375	ENSSLDG00000003130	upf3b	97	56.795	Seriola_lalandi_dorsalis
ENSFALG00000001569	UPF3B	88	65.247	ENSSARG00000004147	UPF3B	99	65.265	Sorex_araneus
ENSFALG00000001569	UPF3B	100	74.059	ENSSPUG00000013082	UPF3B	100	73.465	Sphenodon_punctatus
ENSFALG00000001569	UPF3B	100	53.953	ENSSPAG00000009989	upf3b	99	56.375	Stegastes_partitus
ENSFALG00000001569	UPF3B	99	64.612	ENSSSCG00000012617	UPF3B	99	65.278	Sus_scrofa
ENSFALG00000001569	UPF3B	89	93.498	ENSTGUG00000003413	UPF3B	100	93.498	Taeniopygia_guttata
ENSFALG00000001569	UPF3B	97	54.656	ENSTRUG00000010645	upf3b	99	54.777	Takifugu_rubripes
ENSFALG00000001569	UPF3B	94	51.464	ENSTNIG00000015763	upf3b	94	48.326	Tetraodon_nigroviridis
ENSFALG00000001569	UPF3B	99	56.200	ENSTBEG00000003229	UPF3B	99	56.687	Tupaia_belangeri
ENSFALG00000001569	UPF3B	99	62.574	ENSUAMG00000024565	UPF3B	99	60.506	Ursus_americanus
ENSFALG00000001569	UPF3B	88	65.402	ENSUMAG00000002150	UPF3B	90	62.775	Ursus_maritimus
ENSFALG00000001569	UPF3B	83	68.246	ENSVPAG00000009971	UPF3B	99	68.246	Vicugna_pacos
ENSFALG00000001569	UPF3B	90	45.188	ENSVVUG00000013538	UPF3A	90	40.377	Vulpes_vulpes
ENSFALG00000001569	UPF3B	99	63.022	ENSVVUG00000011594	UPF3B	97	73.611	Vulpes_vulpes
ENSFALG00000001569	UPF3B	98	57.172	ENSXETG00000007440	upf3b	84	73.148	Xenopus_tropicalis
ENSFALG00000001569	UPF3B	54	68.047	ENSXCOG00000018591	upf3a	55	68.485	Xiphophorus_couchianus
ENSFALG00000001569	UPF3B	94	45.648	ENSXCOG00000016586	upf3b	97	65.138	Xiphophorus_couchianus
ENSFALG00000001569	UPF3B	94	48.632	ENSXMAG00000013680	upf3b	94	48.529	Xiphophorus_maculatus
ENSFALG00000001569	UPF3B	54	68.047	ENSXMAG00000013452	upf3a	57	68.485	Xiphophorus_maculatus