EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFALG00000001781 (Gene tree)
Gene ID: -
Gene Symbol: HFM1
Alias: FLJ36760|FLJ39011|MER3|SEC63D1
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 32447 bases
Position: chrJH603330.1:1102505-1134951
Accession: 20193
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000001869	ResIII	PF04851.15	3e-13	1	1
ENSFALP00000001869	DEAD	PF00270.29	2.7e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000001880	HFM1-201	4281	-	ENSFALP00000001869	1426 (aa)	-	U3JGG5

Gene Model

Click here to download ENSFALG00000001781's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000001781's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFALG00000001781	HFM1	50	34.456	ENSFALG00000005260	ASCC3	61	34.456
ENSFALG00000001781	HFM1	59	31.144	ENSFALG00000001368	-	76	31.022

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000001781	HFM1	100	60.428	ENSG00000162669	HFM1	100	60.014	Homo_sapiens
ENSFALG00000001781	HFM1	58	66.029	ENSAPOG00000005304	hfm1	94	66.029	Acanthochromis_polyacanthus
ENSFALG00000001781	HFM1	100	60.478	ENSAMEG00000000432	HFM1	100	59.864	Ailuropoda_melanoleuca
ENSFALG00000001781	HFM1	73	60.419	ENSACIG00000021553	hfm1	83	65.306	Amphilophus_citrinellus
ENSFALG00000001781	HFM1	58	66.906	ENSAOCG00000022839	hfm1	96	69.647	Amphiprion_ocellaris
ENSFALG00000001781	HFM1	55	69.949	ENSAPEG00000014316	hfm1	96	69.949	Amphiprion_percula
ENSFALG00000001781	HFM1	66	64.041	ENSATEG00000019181	hfm1	80	63.198	Anabas_testudineus
ENSFALG00000001781	HFM1	100	75.375	ENSAPLG00000013639	HFM1	100	74.712	Anas_platyrhynchos
ENSFALG00000001781	HFM1	100	60.055	ENSANAG00000029513	HFM1	100	59.643	Aotus_nancymaae
ENSFALG00000001781	HFM1	65	64.401	ENSACLG00000009033	hfm1	96	65.988	Astatotilapia_calliptera
ENSFALG00000001781	HFM1	86	54.481	ENSAMXG00000006108	hfm1	84	54.481	Astyanax_mexicanus
ENSFALG00000001781	HFM1	100	60.646	ENSBTAG00000020856	HFM1	100	60.164	Bos_taurus
ENSFALG00000001781	HFM1	100	60.771	ENSCJAG00000001843	HFM1	100	60.575	Callithrix_jacchus
ENSFALG00000001781	HFM1	100	60.616	ENSCAFG00000020187	HFM1	100	60.000	Canis_familiaris
ENSFALG00000001781	HFM1	100	60.096	ENSTSYG00000014250	HFM1	100	59.551	Carlito_syrichta
ENSFALG00000001781	HFM1	99	59.025	ENSCPOG00000007421	HFM1	99	58.555	Cavia_porcellus
ENSFALG00000001781	HFM1	100	60.496	ENSCCAG00000033206	HFM1	100	60.082	Cebus_capucinus
ENSFALG00000001781	HFM1	100	60.263	ENSCATG00000030987	HFM1	100	59.849	Cercocebus_atys
ENSFALG00000001781	HFM1	100	57.933	ENSCLAG00000005173	HFM1	99	57.483	Chinchilla_lanigera
ENSFALG00000001781	HFM1	62	82.895	ENSCHOG00000011824	-	71	82.895	Choloepus_hoffmanni
ENSFALG00000001781	HFM1	100	54.433	ENSCGRG00001016995	Hfm1	100	54.340	Cricetulus_griseus_chok1gshd
ENSFALG00000001781	HFM1	100	57.655	ENSCGRG00000017181	Hfm1	100	57.545	Cricetulus_griseus_crigri
ENSFALG00000001781	HFM1	71	60.153	ENSCSEG00000017659	hfm1	88	63.448	Cynoglossus_semilaevis
ENSFALG00000001781	HFM1	50	68.487	ENSCVAG00000005075	hfm1	86	68.487	Cyprinodon_variegatus
ENSFALG00000001781	HFM1	60	66.937	ENSDARG00000104288	hfm1	77	66.937	Danio_rerio
ENSFALG00000001781	HFM1	100	57.877	ENSDNOG00000004776	HFM1	100	57.437	Dasypus_novemcinctus
ENSFALG00000001781	HFM1	100	57.763	ENSDORG00000014661	Hfm1	100	57.239	Dipodomys_ordii
ENSFALG00000001781	HFM1	72	71.470	ENSEASG00005015424	HFM1	99	71.470	Equus_asinus_asinus
ENSFALG00000001781	HFM1	100	59.707	ENSECAG00000024039	HFM1	100	58.983	Equus_caballus
ENSFALG00000001781	HFM1	63	67.654	ENSELUG00000018944	hfm1	97	67.654	Esox_lucius
ENSFALG00000001781	HFM1	100	60.408	ENSFCAG00000029116	HFM1	100	59.932	Felis_catus
ENSFALG00000001781	HFM1	100	57.483	ENSFDAG00000020816	HFM1	100	57.039	Fukomys_damarensis
ENSFALG00000001781	HFM1	66	61.186	ENSGMOG00000017436	hfm1	100	61.123	Gadus_morhua
ENSFALG00000001781	HFM1	71	60.676	ENSGAFG00000018093	hfm1	95	65.012	Gambusia_affinis
ENSFALG00000001781	HFM1	66	61.850	ENSGACG00000015686	hfm1	99	61.850	Gasterosteus_aculeatus
ENSFALG00000001781	HFM1	100	60.524	ENSGGOG00000038524	HFM1	100	60.110	Gorilla_gorilla
ENSFALG00000001781	HFM1	65	65.372	ENSHBUG00000007309	hfm1	86	65.372	Haplochromis_burtoni
ENSFALG00000001781	HFM1	57	64.951	ENSHCOG00000019632	hfm1	97	64.951	Hippocampus_comes
ENSFALG00000001781	HFM1	70	62.028	ENSIPUG00000017020	hfm1	91	66.388	Ictalurus_punctatus
ENSFALG00000001781	HFM1	100	57.779	ENSJJAG00000017198	Hfm1	100	57.240	Jaculus_jaculus
ENSFALG00000001781	HFM1	62	63.616	ENSKMAG00000002282	hfm1	90	63.616	Kryptolebias_marmoratus
ENSFALG00000001781	HFM1	71	59.042	ENSLBEG00000006759	hfm1	96	65.673	Labrus_bergylta
ENSFALG00000001781	HFM1	66	70.539	ENSLACG00000010698	HFM1	91	70.436	Latimeria_chalumnae
ENSFALG00000001781	HFM1	72	64.839	ENSLOCG00000004931	hfm1	95	64.976	Lepisosteus_oculatus
ENSFALG00000001781	HFM1	100	58.362	ENSMFAG00000003649	HFM1	100	57.963	Macaca_fascicularis
ENSFALG00000001781	HFM1	100	60.359	ENSMMUG00000006819	HFM1	100	59.945	Macaca_mulatta
ENSFALG00000001781	HFM1	55	70.128	ENSMAMG00000004623	hfm1	97	66.345	Mastacembelus_armatus
ENSFALG00000001781	HFM1	65	64.401	ENSMZEG00005004679	hfm1	96	65.988	Maylandia_zebra
ENSFALG00000001781	HFM1	55	88.790	ENSMGAG00000008437	HFM1	97	88.790	Meleagris_gallopavo
ENSFALG00000001781	HFM1	100	58.040	ENSMAUG00000018858	Hfm1	100	57.721	Mesocricetus_auratus
ENSFALG00000001781	HFM1	100	59.247	ENSMICG00000037935	HFM1	100	58.707	Microcebus_murinus
ENSFALG00000001781	HFM1	100	55.833	ENSMOCG00000014812	Hfm1	100	55.908	Microtus_ochrogaster
ENSFALG00000001781	HFM1	62	64.221	ENSMMOG00000006148	hfm1	93	65.950	Mola_mola
ENSFALG00000001781	HFM1	65	64.423	ENSMALG00000002401	hfm1	96	65.529	Monopterus_albus
ENSFALG00000001781	HFM1	96	56.489	MGP_CAROLIEiJ_G0027496	Hfm1	99	56.489	Mus_caroli
ENSFALG00000001781	HFM1	100	57.601	ENSMUSG00000043410	Hfm1	100	57.356	Mus_musculus
ENSFALG00000001781	HFM1	100	57.684	MGP_PahariEiJ_G0017268	Hfm1	100	57.441	Mus_pahari
ENSFALG00000001781	HFM1	100	57.787	MGP_SPRETEiJ_G0028495	Hfm1	100	57.541	Mus_spretus
ENSFALG00000001781	HFM1	100	58.568	ENSMPUG00000004594	HFM1	100	58.568	Mustela_putorius_furo
ENSFALG00000001781	HFM1	100	60.496	ENSMLUG00000010200	HFM1	100	59.945	Myotis_lucifugus
ENSFALG00000001781	HFM1	65	61.638	ENSNBRG00000002910	hfm1	97	66.303	Neolamprologus_brichardi
ENSFALG00000001781	HFM1	100	57.438	ENSNLEG00000010285	HFM1	100	57.045	Nomascus_leucogenys
ENSFALG00000001781	HFM1	77	63.105	ENSMEUG00000015788	HFM1	71	63.105	Notamacropus_eugenii
ENSFALG00000001781	HFM1	82	66.040	ENSOPRG00000013916	HFM1	82	66.040	Ochotona_princeps
ENSFALG00000001781	HFM1	72	62.042	ENSONIG00000010590	hfm1	98	62.222	Oreochromis_niloticus
ENSFALG00000001781	HFM1	57	65.356	ENSORLG00000026844	hfm1	99	65.356	Oryzias_latipes
ENSFALG00000001781	HFM1	68	56.033	ENSORLG00020002951	hfm1	78	55.713	Oryzias_latipes_hni
ENSFALG00000001781	HFM1	89	51.729	ENSOMEG00000016474	hfm1	67	62.819	Oryzias_melastigma
ENSFALG00000001781	HFM1	85	64.834	ENSOGAG00000032369	HFM1	99	64.234	Otolemur_garnettii
ENSFALG00000001781	HFM1	100	61.019	ENSOARG00000015812	HFM1	100	60.411	Ovis_aries
ENSFALG00000001781	HFM1	92	62.744	ENSPPAG00000024582	HFM1	99	62.277	Pan_paniscus
ENSFALG00000001781	HFM1	100	60.780	ENSPPRG00000003270	HFM1	100	60.068	Panthera_pardus
ENSFALG00000001781	HFM1	100	60.479	ENSPTIG00000018881	HFM1	100	60.027	Panthera_tigris_altaica
ENSFALG00000001781	HFM1	100	60.663	ENSPTRG00000000948	HFM1	100	60.247	Pan_troglodytes
ENSFALG00000001781	HFM1	100	60.124	ENSPANG00000009838	HFM1	100	59.712	Papio_anubis
ENSFALG00000001781	HFM1	62	67.986	ENSPKIG00000003810	hfm1	99	66.939	Paramormyrops_kingsleyae
ENSFALG00000001781	HFM1	58	65.097	ENSPMGG00000011059	hfm1	100	65.097	Periophthalmus_magnuspinnatus
ENSFALG00000001781	HFM1	100	58.124	ENSPEMG00000022852	Hfm1	100	58.056	Peromyscus_maniculatus_bairdii
ENSFALG00000001781	HFM1	100	58.138	ENSPCIG00000014233	HFM1	100	57.818	Phascolarctos_cinereus
ENSFALG00000001781	HFM1	71	60.265	ENSPFOG00000017194	hfm1	92	63.834	Poecilia_formosa
ENSFALG00000001781	HFM1	71	61.905	ENSPLAG00000000571	hfm1	88	63.313	Poecilia_latipinna
ENSFALG00000001781	HFM1	72	61.427	ENSPMEG00000019475	hfm1	88	63.552	Poecilia_mexicana
ENSFALG00000001781	HFM1	72	60.697	ENSPREG00000007803	hfm1	95	64.852	Poecilia_reticulata
ENSFALG00000001781	HFM1	100	60.137	ENSPPYG00000001163	HFM1	100	59.728	Pongo_abelii
ENSFALG00000001781	HFM1	57	66.076	ENSPCAG00000004289	-	53	66.076	Procavia_capensis
ENSFALG00000001781	HFM1	92	61.476	ENSPVAG00000009713	HFM1	85	61.314	Pteropus_vampyrus
ENSFALG00000001781	HFM1	65	64.293	ENSPNYG00000001795	hfm1	96	65.988	Pundamilia_nyererei
ENSFALG00000001781	HFM1	59	67.769	ENSPNAG00000010865	hfm1	84	67.769	Pygocentrus_nattereri
ENSFALG00000001781	HFM1	100	57.153	ENSRNOG00000023299	Hfm1	100	56.700	Rattus_norvegicus
ENSFALG00000001781	HFM1	100	60.194	ENSRROG00000045569	HFM1	100	59.780	Rhinopithecus_roxellana
ENSFALG00000001781	HFM1	100	59.876	ENSSBOG00000027456	HFM1	100	59.262	Saimiri_boliviensis_boliviensis
ENSFALG00000001781	HFM1	60	63.056	ENSSHAG00000014616	-	98	62.345	Sarcophilus_harrisii
ENSFALG00000001781	HFM1	85	54.988	ENSSFOG00015020129	hfm1	66	64.371	Scleropages_formosus
ENSFALG00000001781	HFM1	62	66.704	ENSSMAG00000006907	hfm1	87	66.704	Scophthalmus_maximus
ENSFALG00000001781	HFM1	58	66.787	ENSSDUG00000011424	hfm1	93	66.787	Seriola_dumerili
ENSFALG00000001781	HFM1	58	66.907	ENSSLDG00000016386	hfm1	92	66.907	Seriola_lalandi_dorsalis
ENSFALG00000001781	HFM1	64	62.239	ENSSPAG00000001023	hfm1	94	66.667	Stegastes_partitus
ENSFALG00000001781	HFM1	100	58.294	ENSSSCG00000006912	HFM1	100	57.710	Sus_scrofa
ENSFALG00000001781	HFM1	67	95.716	ENSTGUG00000006172	HFM1	100	95.716	Taeniopygia_guttata
ENSFALG00000001781	HFM1	90	63.341	ENSTTRG00000013933	HFM1	91	62.855	Tursiops_truncatus
ENSFALG00000001781	HFM1	92	63.138	ENSVPAG00000011331	HFM1	89	63.138	Vicugna_pacos
ENSFALG00000001781	HFM1	70	71.037	ENSVVUG00000020760	HFM1	90	75.107	Vulpes_vulpes
ENSFALG00000001781	HFM1	58	66.545	ENSXMAG00000004178	hfm1	91	66.545	Xiphophorus_maculatus