EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFALG00000001889 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Minus strand
Length: 52761 bases
Position: chrJH603242.1:2700994-2753754
Accession: 101811115
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000001966	Upf2	PF04050.14	1.4e-33	1	1
ENSFALP00000001966	MIF4G	PF02854.19	3.3e-75	1	3
ENSFALP00000001966	MIF4G	PF02854.19	3.3e-75	2	3
ENSFALP00000001966	MIF4G	PF02854.19	3.3e-75	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000001977	UPF2-201	5311	XM_016304952	ENSFALP00000001966	1299 (aa)	XP_016160438	U3JGR2

Gene Model

Click here to download ENSFALG00000001889's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000001889's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000001889	UPF2	98	93.082	ENSG00000151461	UPF2	100	91.274	Homo_sapiens
ENSFALG00000001889	UPF2	98	80.031	ENSAPOG00000015837	UPF2	100	79.170	Acanthochromis_polyacanthus
ENSFALG00000001889	UPF2	98	93.942	ENSAMEG00000004586	UPF2	100	93.942	Ailuropoda_melanoleuca
ENSFALG00000001889	UPF2	98	83.750	ENSACIG00000018078	UPF2	100	83.750	Amphilophus_citrinellus
ENSFALG00000001889	UPF2	98	84.009	ENSAOCG00000016766	UPF2	100	84.087	Amphiprion_ocellaris
ENSFALG00000001889	UPF2	98	84.087	ENSAPEG00000019084	UPF2	100	84.165	Amphiprion_percula
ENSFALG00000001889	UPF2	98	83.683	ENSATEG00000021677	UPF2	99	83.761	Anabas_testudineus
ENSFALG00000001889	UPF2	98	90.652	ENSAPLG00000010287	UPF2	90	94.266	Anas_platyrhynchos
ENSFALG00000001889	UPF2	98	93.863	ENSACAG00000009259	UPF2	100	93.863	Anolis_carolinensis
ENSFALG00000001889	UPF2	98	83.006	ENSANAG00000028451	UPF2	99	83.006	Aotus_nancymaae
ENSFALG00000001889	UPF2	98	81.684	ENSACLG00000012696	UPF2	100	83.476	Astatotilapia_calliptera
ENSFALG00000001889	UPF2	98	83.516	ENSAMXG00000013700	UPF2	99	83.333	Astyanax_mexicanus
ENSFALG00000001889	UPF2	98	94.020	ENSBTAG00000000288	UPF2	100	94.020	Bos_taurus
ENSFALG00000001889	UPF2	98	92.447	ENSCJAG00000020685	UPF2	100	92.447	Callithrix_jacchus
ENSFALG00000001889	UPF2	98	94.099	ENSCAFG00000004839	UPF2	100	94.099	Canis_familiaris
ENSFALG00000001889	UPF2	98	91.883	ENSCAFG00020005882	UPF2	98	93.472	Canis_lupus_dingo
ENSFALG00000001889	UPF2	98	94.020	ENSCHIG00000020359	UPF2	100	94.020	Capra_hircus
ENSFALG00000001889	UPF2	98	93.548	ENSTSYG00000000935	UPF2	97	97.159	Carlito_syrichta
ENSFALG00000001889	UPF2	89	83.649	ENSCAPG00000016658	UPF2	94	83.435	Cavia_aperea
ENSFALG00000001889	UPF2	97	91.363	ENSCPOG00000008809	UPF2	100	90.887	Cavia_porcellus
ENSFALG00000001889	UPF2	98	85.681	ENSCCAG00000035991	UPF2	100	87.097	Cebus_capucinus
ENSFALG00000001889	UPF2	98	93.160	ENSCATG00000032679	UPF2	100	91.352	Cercocebus_atys
ENSFALG00000001889	UPF2	98	93.155	ENSCLAG00000011434	UPF2	100	92.683	Chinchilla_lanigera
ENSFALG00000001889	UPF2	98	93.160	ENSCSAG00000013372	UPF2	100	91.352	Chlorocebus_sabaeus
ENSFALG00000001889	UPF2	85	96.429	ENSCHOG00000000422	UPF2	89	96.429	Choloepus_hoffmanni
ENSFALG00000001889	UPF2	98	94.878	ENSCPBG00000027823	UPF2	92	96.878	Chrysemys_picta_bellii
ENSFALG00000001889	UPF2	77	49.457	ENSCSAVG00000007772	-	79	50.318	Ciona_savignyi
ENSFALG00000001889	UPF2	98	87.031	ENSCANG00000040396	UPF2	100	85.838	Colobus_angolensis_palliatus
ENSFALG00000001889	UPF2	98	93.470	ENSCGRG00001019347	Upf2	100	92.998	Cricetulus_griseus_chok1gshd
ENSFALG00000001889	UPF2	98	93.470	ENSCGRG00000017993	Upf2	100	92.998	Cricetulus_griseus_crigri
ENSFALG00000001889	UPF2	89	82.241	ENSCSEG00000003520	UPF2	91	81.810	Cynoglossus_semilaevis
ENSFALG00000001889	UPF2	97	83.739	ENSCVAG00000006167	UPF2	100	83.504	Cyprinodon_variegatus
ENSFALG00000001889	UPF2	98	93.784	ENSDNOG00000018160	UPF2	100	93.784	Dasypus_novemcinctus
ENSFALG00000001889	UPF2	98	92.840	ENSDORG00000002478	Upf2	100	92.368	Dipodomys_ordii
ENSFALG00000001889	UPF2	88	36.595	FBgn0029992	Upf2	90	39.869	Drosophila_melanogaster
ENSFALG00000001889	UPF2	71	98.529	ENSETEG00000011583	-	66	98.529	Echinops_telfairi
ENSFALG00000001889	UPF2	67	69.940	ENSEBUG00000012448	-	87	73.826	Eptatretus_burgeri
ENSFALG00000001889	UPF2	98	91.975	ENSEASG00005019274	UPF2	100	95.062	Equus_asinus_asinus
ENSFALG00000001889	UPF2	98	93.627	ENSECAG00000017022	UPF2	100	93.155	Equus_caballus
ENSFALG00000001889	UPF2	80	91.054	ENSEEUG00000007819	UPF2	82	91.054	Erinaceus_europaeus
ENSFALG00000001889	UPF2	98	82.408	ENSELUG00000012014	UPF2	100	83.048	Esox_lucius
ENSFALG00000001889	UPF2	98	96.685	ENSFCAG00000005785	UPF2	100	94.256	Felis_catus
ENSFALG00000001889	UPF2	98	92.604	ENSFDAG00000014348	UPF2	100	91.660	Fukomys_damarensis
ENSFALG00000001889	UPF2	97	84.032	ENSFHEG00000009826	UPF2	99	83.848	Fundulus_heteroclitus
ENSFALG00000001889	UPF2	89	83.420	ENSGMOG00000005557	UPF2	90	84.170	Gadus_morhua
ENSFALG00000001889	UPF2	98	97.642	ENSGALG00000033772	UPF2	100	97.642	Gallus_gallus
ENSFALG00000001889	UPF2	98	83.385	ENSGAFG00000020867	UPF2	100	83.229	Gambusia_affinis
ENSFALG00000001889	UPF2	89	84.901	ENSGACG00000001080	UPF2	100	83.047	Gasterosteus_aculeatus
ENSFALG00000001889	UPF2	98	95.358	ENSGAGG00000002700	UPF2	100	95.358	Gopherus_agassizii
ENSFALG00000001889	UPF2	98	93.082	ENSGGOG00000001479	UPF2	100	91.274	Gorilla_gorilla
ENSFALG00000001889	UPF2	98	81.655	ENSHBUG00000004249	UPF2	100	83.450	Haplochromis_burtoni
ENSFALG00000001889	UPF2	98	92.919	ENSHGLG00000015176	-	100	92.447	Heterocephalus_glaber_female
ENSFALG00000001889	UPF2	98	82.047	ENSHGLG00000003822	-	99	81.102	Heterocephalus_glaber_female
ENSFALG00000001889	UPF2	86	94.519	ENSHGLG00100010036	UPF2	89	93.980	Heterocephalus_glaber_male
ENSFALG00000001889	UPF2	98	81.119	ENSHCOG00000004025	UPF2	99	81.352	Hippocampus_comes
ENSFALG00000001889	UPF2	98	82.761	ENSIPUG00000015524	UPF2	100	82.527	Ictalurus_punctatus
ENSFALG00000001889	UPF2	98	93.548	ENSSTOG00000013075	UPF2	100	93.076	Ictidomys_tridecemlineatus
ENSFALG00000001889	UPF2	98	91.660	ENSJJAG00000004913	Upf2	100	91.109	Jaculus_jaculus
ENSFALG00000001889	UPF2	89	86.116	ENSKMAG00000001071	UPF2	91	86.033	Kryptolebias_marmoratus
ENSFALG00000001889	UPF2	78	82.694	ENSLBEG00000000728	-	93	82.891	Labrus_bergylta
ENSFALG00000001889	UPF2	98	83.140	ENSLBEG00000016394	-	99	83.217	Labrus_bergylta
ENSFALG00000001889	UPF2	97	80.203	ENSLACG00000015945	UPF2	100	80.956	Latimeria_chalumnae
ENSFALG00000001889	UPF2	97	87.864	ENSLOCG00000015698	UPF2	100	87.786	Lepisosteus_oculatus
ENSFALG00000001889	UPF2	98	93.160	ENSMFAG00000043865	UPF2	100	91.352	Macaca_fascicularis
ENSFALG00000001889	UPF2	98	93.160	ENSMMUG00000008241	UPF2	100	91.352	Macaca_mulatta
ENSFALG00000001889	UPF2	79	92.098	ENSMNEG00000008062	UPF2	99	90.108	Macaca_nemestrina
ENSFALG00000001889	UPF2	93	96.145	ENSMLEG00000036120	UPF2	100	96.377	Mandrillus_leucophaeus
ENSFALG00000001889	UPF2	98	83.735	ENSMAMG00000018276	UPF2	100	83.735	Mastacembelus_armatus
ENSFALG00000001889	UPF2	98	81.684	ENSMZEG00005021595	UPF2	100	83.476	Maylandia_zebra
ENSFALG00000001889	UPF2	98	96.302	ENSMGAG00000004573	UPF2	99	96.302	Meleagris_gallopavo
ENSFALG00000001889	UPF2	98	91.188	ENSMAUG00000016512	Upf2	100	90.716	Mesocricetus_auratus
ENSFALG00000001889	UPF2	93	96.939	ENSMICG00000001716	UPF2	99	96.923	Microcebus_murinus
ENSFALG00000001889	UPF2	98	92.998	ENSMOCG00000008263	Upf2	100	92.132	Microtus_ochrogaster
ENSFALG00000001889	UPF2	88	84.101	ENSMMOG00000006528	UPF2	72	87.165	Mola_mola
ENSFALG00000001889	UPF2	98	94.256	ENSMODG00000016794	UPF2	100	94.256	Monodelphis_domestica
ENSFALG00000001889	UPF2	98	83.672	ENSMALG00000002663	UPF2	100	83.672	Monopterus_albus
ENSFALG00000001889	UPF2	98	92.998	MGP_CAROLIEiJ_G0023157	Upf2	100	94.095	Mus_caroli
ENSFALG00000001889	UPF2	98	93.391	ENSMUSG00000043241	Upf2	99	96.000	Mus_musculus
ENSFALG00000001889	UPF2	98	93.076	MGP_PahariEiJ_G0019217	Upf2	100	94.476	Mus_pahari
ENSFALG00000001889	UPF2	98	93.627	MGP_SPRETEiJ_G0024075	Upf2	100	96.000	Mus_spretus
ENSFALG00000001889	UPF2	98	94.020	ENSMPUG00000001064	UPF2	100	94.020	Mustela_putorius_furo
ENSFALG00000001889	UPF2	98	93.244	ENSMLUG00000000228	UPF2	100	93.166	Myotis_lucifugus
ENSFALG00000001889	UPF2	98	81.684	ENSNBRG00000013629	UPF2	100	83.476	Neolamprologus_brichardi
ENSFALG00000001889	UPF2	98	93.082	ENSNLEG00000012058	UPF2	100	91.274	Nomascus_leucogenys
ENSFALG00000001889	UPF2	56	100.000	ENSMEUG00000002180	-	55	100.000	Notamacropus_eugenii
ENSFALG00000001889	UPF2	80	98.592	ENSOPRG00000006801	-	78	98.592	Ochotona_princeps
ENSFALG00000001889	UPF2	98	93.155	ENSODEG00000001290	UPF2	100	92.683	Octodon_degus
ENSFALG00000001889	UPF2	98	81.684	ENSONIG00000017991	UPF2	100	83.476	Oreochromis_niloticus
ENSFALG00000001889	UPF2	98	92.633	ENSOCUG00000006230	UPF2	100	92.671	Oryctolagus_cuniculus
ENSFALG00000001889	UPF2	98	83.022	ENSORLG00000017189	UPF2	100	83.255	Oryzias_latipes
ENSFALG00000001889	UPF2	98	83.022	ENSORLG00020005969	UPF2	100	83.255	Oryzias_latipes_hni
ENSFALG00000001889	UPF2	98	83.022	ENSORLG00015005713	UPF2	100	83.255	Oryzias_latipes_hsok
ENSFALG00000001889	UPF2	98	79.547	ENSOMEG00000023420	UPF2	98	80.406	Oryzias_melastigma
ENSFALG00000001889	UPF2	98	93.234	ENSOGAG00000005796	UPF2	100	93.234	Otolemur_garnettii
ENSFALG00000001889	UPF2	98	93.873	ENSOARG00000014587	UPF2	100	93.873	Ovis_aries
ENSFALG00000001889	UPF2	98	89.367	ENSPPAG00000037953	UPF2	100	88.268	Pan_paniscus
ENSFALG00000001889	UPF2	98	94.256	ENSPPRG00000000690	UPF2	100	94.256	Panthera_pardus
ENSFALG00000001889	UPF2	98	94.256	ENSPTIG00000008867	UPF2	100	94.256	Panthera_tigris_altaica
ENSFALG00000001889	UPF2	98	93.082	ENSPTRG00000002291	UPF2	100	91.274	Pan_troglodytes
ENSFALG00000001889	UPF2	98	93.160	ENSPANG00000023399	UPF2	100	91.352	Papio_anubis
ENSFALG00000001889	UPF2	98	83.229	ENSPKIG00000025502	UPF2	100	82.371	Paramormyrops_kingsleyae
ENSFALG00000001889	UPF2	59	93.135	ENSPSIG00000015158	UPF2	98	93.135	Pelodiscus_sinensis
ENSFALG00000001889	UPF2	98	81.113	ENSPMGG00000005259	UPF2	100	81.270	Periophthalmus_magnuspinnatus
ENSFALG00000001889	UPF2	91	89.796	ENSPEMG00000015731	Upf2	99	89.796	Peromyscus_maniculatus_bairdii
ENSFALG00000001889	UPF2	98	94.178	ENSPCIG00000006656	UPF2	100	94.178	Phascolarctos_cinereus
ENSFALG00000001889	UPF2	98	83.463	ENSPFOG00000017118	UPF2	100	83.307	Poecilia_formosa
ENSFALG00000001889	UPF2	98	83.463	ENSPLAG00000005094	UPF2	100	83.307	Poecilia_latipinna
ENSFALG00000001889	UPF2	98	83.463	ENSPMEG00000017009	UPF2	100	83.307	Poecilia_mexicana
ENSFALG00000001889	UPF2	98	83.242	ENSPREG00000021880	UPF2	100	83.477	Poecilia_reticulata
ENSFALG00000001889	UPF2	64	95.215	ENSPPYG00000002089	-	100	95.215	Pongo_abelii
ENSFALG00000001889	UPF2	98	80.252	ENSPCAG00000000684	UPF2	91	85.032	Procavia_capensis
ENSFALG00000001889	UPF2	98	90.229	ENSPCOG00000021656	UPF2	100	89.992	Propithecus_coquereli
ENSFALG00000001889	UPF2	98	86.871	ENSPVAG00000017286	UPF2	100	86.871	Pteropus_vampyrus
ENSFALG00000001889	UPF2	98	79.157	ENSPNYG00000017096	UPF2	100	81.421	Pundamilia_nyererei
ENSFALG00000001889	UPF2	98	84.009	ENSPNAG00000009357	UPF2	100	83.931	Pygocentrus_nattereri
ENSFALG00000001889	UPF2	98	88.069	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSFALG00000001889	UPF2	98	91.489	ENSRBIG00000037780	UPF2	100	91.095	Rhinopithecus_bieti
ENSFALG00000001889	UPF2	98	92.610	ENSRROG00000043547	UPF2	100	90.409	Rhinopithecus_roxellana
ENSFALG00000001889	UPF2	98	91.975	ENSSBOG00000020012	UPF2	100	91.503	Saimiri_boliviensis_boliviensis
ENSFALG00000001889	UPF2	98	83.087	ENSSFOG00015023788	upf2	100	84.022	Scleropages_formosus
ENSFALG00000001889	UPF2	88	83.896	ENSSMAG00000007637	UPF2	90	84.695	Scophthalmus_maximus
ENSFALG00000001889	UPF2	98	83.269	ENSSDUG00000017244	UPF2	99	83.579	Seriola_dumerili
ENSFALG00000001889	UPF2	98	81.989	ENSSLDG00000016866	UPF2	82	84.857	Seriola_lalandi_dorsalis
ENSFALG00000001889	UPF2	98	91.739	ENSSARG00000008615	UPF2	100	91.739	Sorex_araneus
ENSFALG00000001889	UPF2	98	92.283	ENSSPUG00000014544	UPF2	99	92.283	Sphenodon_punctatus
ENSFALG00000001889	UPF2	67	95.167	ENSSSCG00000011117	-	100	95.167	Sus_scrofa
ENSFALG00000001889	UPF2	98	99.290	ENSTGUG00000002163	-	100	99.290	Taeniopygia_guttata
ENSFALG00000001889	UPF2	98	82.494	ENSTRUG00000007519	UPF2	99	82.572	Takifugu_rubripes
ENSFALG00000001889	UPF2	91	85.690	ENSTBEG00000012679	UPF2	93	85.182	Tupaia_belangeri
ENSFALG00000001889	UPF2	98	93.627	ENSTTRG00000016388	UPF2	100	93.234	Tursiops_truncatus
ENSFALG00000001889	UPF2	90	97.222	ENSUAMG00000023560	UPF2	98	100.000	Ursus_americanus
ENSFALG00000001889	UPF2	98	93.740	ENSUMAG00000012953	UPF2	96	93.740	Ursus_maritimus
ENSFALG00000001889	UPF2	83	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSFALG00000001889	UPF2	98	94.099	ENSVVUG00000006166	UPF2	100	94.099	Vulpes_vulpes
ENSFALG00000001889	UPF2	98	84.778	ENSXETG00000033103	UPF2	91	89.533	Xenopus_tropicalis
ENSFALG00000001889	UPF2	98	82.734	ENSXCOG00000011604	UPF2	100	82.891	Xiphophorus_couchianus
ENSFALG00000001889	UPF2	98	82.995	ENSXMAG00000017209	UPF2	100	82.917	Xiphophorus_maculatus