EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSFALG00000001892 (Gene tree)
Gene ID
-
Gene Symbol
LSM5
Alias
YER146W
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Ficedula_albicollis
Status
putative
Strand
Plus strand
Length
4633 bases
Position
chrJH603351.1:1251243-1255875
Accession
17162
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSFALP00000001968LSMPF01423.221e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSFALT00000001979LSM5-2012849-ENSFALP0000000196883 (aa)-U3JGR4
Gene Model
Click here to download ENSFALG00000001892's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000001892's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSFALG00000001892LSM57136.066ENSFALG00000000488SNRPE6436.066
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSFALG00000001892LSM592100.000ENSG00000106355LSM5100100.000Homo_sapiens
ENSFALG00000001892LSM59297.368ENSAPOG00000020779LSM58497.368Acanthochromis_polyacanthus
ENSFALG00000001892LSM58197.015ENSAPOG00000011743LSM510096.774Acanthochromis_polyacanthus
ENSFALG00000001892LSM592100.000ENSAMEG00000006700LSM584100.000Ailuropoda_melanoleuca
ENSFALG00000001892LSM55493.333ENSACIG00000019185lsm58093.333Amphilophus_citrinellus
ENSFALG00000001892LSM59297.368ENSAOCG00000001636lsm58497.368Amphiprion_ocellaris
ENSFALG00000001892LSM57596.774ENSAPEG00000008201lsm510096.774Amphiprion_percula
ENSFALG00000001892LSM59297.368ENSAPEG00000008151lsm58497.368Amphiprion_percula
ENSFALG00000001892LSM58197.015ENSATEG00000020470lsm57693.333Anabas_testudineus
ENSFALG00000001892LSM589100.000ENSAPLG00000008171LSM5100100.000Anas_platyrhynchos
ENSFALG00000001892LSM59296.053ENSANAG00000024192-7996.053Aotus_nancymaae
ENSFALG00000001892LSM592100.000ENSANAG00000034409-84100.000Aotus_nancymaae
ENSFALG00000001892LSM57890.769ENSANAG00000037758-8190.769Aotus_nancymaae
ENSFALG00000001892LSM59297.368ENSACLG00000012891lsm58697.368Astatotilapia_calliptera
ENSFALG00000001892LSM59282.278ENSAMXG00000035543lsm58482.278Astyanax_mexicanus
ENSFALG00000001892LSM592100.000ENSBTAG00000002332LSM584100.000Bos_taurus
ENSFALG00000001892LSM59276.316WBGene00003079lsm-58476.316Caenorhabditis_elegans
ENSFALG00000001892LSM59286.842ENSCJAG00000005678-8486.842Callithrix_jacchus
ENSFALG00000001892LSM592100.000ENSCJAG00000047379LSM55889.189Callithrix_jacchus
ENSFALG00000001892LSM59298.684ENSCAFG00000019261-8498.684Canis_familiaris
ENSFALG00000001892LSM592100.000ENSCAFG00020004946LSM584100.000Canis_lupus_dingo
ENSFALG00000001892LSM59297.368ENSCHIG00000004079-8397.368Capra_hircus
ENSFALG00000001892LSM57176.271ENSCHIG00000021428-7872.603Capra_hircus
ENSFALG00000001892LSM592100.000ENSCHIG00000024539LSM584100.000Capra_hircus
ENSFALG00000001892LSM592100.000ENSTSYG00000006449-84100.000Carlito_syrichta
ENSFALG00000001892LSM59284.211ENSTSYG00000028728-8284.211Carlito_syrichta
ENSFALG00000001892LSM58288.235ENSTSYG00000026530-7488.235Carlito_syrichta
ENSFALG00000001892LSM59269.737ENSTSYG00000036637-7969.737Carlito_syrichta
ENSFALG00000001892LSM59092.000ENSCAPG00000006980LSM510092.000Cavia_aperea
ENSFALG00000001892LSM592100.000ENSCPOG00000036386LSM584100.000Cavia_porcellus
ENSFALG00000001892LSM58277.941ENSCCAG00000037334-8877.941Cebus_capucinus
ENSFALG00000001892LSM57893.846ENSCCAG00000032792-8193.846Cebus_capucinus
ENSFALG00000001892LSM59298.684ENSCCAG00000000821-8498.684Cebus_capucinus
ENSFALG00000001892LSM592100.000ENSCCAG00000037808-84100.000Cebus_capucinus
ENSFALG00000001892LSM59298.684ENSCCAG00000032123-8498.684Cebus_capucinus
ENSFALG00000001892LSM59286.842ENSCATG00000014790-8386.842Cercocebus_atys
ENSFALG00000001892LSM592100.000ENSCATG00000040218LSM5100100.000Cercocebus_atys
ENSFALG00000001892LSM592100.000ENSCLAG00000000202LSM584100.000Chinchilla_lanigera
ENSFALG00000001892LSM59284.211ENSCLAG00000005062-7584.211Chinchilla_lanigera
ENSFALG00000001892LSM572100.000ENSCHOG00000005335LSM579100.000Choloepus_hoffmanni
ENSFALG00000001892LSM592100.000ENSCPBG00000013685LSM584100.000Chrysemys_picta_bellii
ENSFALG00000001892LSM59289.474ENSCING00000020625-8589.474Ciona_intestinalis
ENSFALG00000001892LSM59289.474ENSCSAVG00000001439-8689.474Ciona_savignyi
ENSFALG00000001892LSM592100.000ENSCANG00000039909LSM5100100.000Colobus_angolensis_palliatus
ENSFALG00000001892LSM592100.000ENSCGRG00001015461Lsm584100.000Cricetulus_griseus_chok1gshd
ENSFALG00000001892LSM590100.000ENSCGRG00000007677Lsm5100100.000Cricetulus_griseus_crigri
ENSFALG00000001892LSM55493.333ENSCSEG00000015286lsm57693.333Cynoglossus_semilaevis
ENSFALG00000001892LSM59297.368ENSCVAG00000004262lsm58993.671Cyprinodon_variegatus
ENSFALG00000001892LSM59297.368ENSDARG00000071573lsm510096.774Danio_rerio
ENSFALG00000001892LSM58787.500ENSDNOG00000049495-7987.500Dasypus_novemcinctus
ENSFALG00000001892LSM592100.000ENSDNOG00000034958LSM584100.000Dasypus_novemcinctus
ENSFALG00000001892LSM592100.000ENSDORG00000009422Lsm584100.000Dipodomys_ordii
ENSFALG00000001892LSM58788.889FBgn0035675CG66107988.889Drosophila_melanogaster
ENSFALG00000001892LSM59278.947ENSETEG00000001469-8178.947Echinops_telfairi
ENSFALG00000001892LSM592100.000ENSETEG00000018068LSM584100.000Echinops_telfairi
ENSFALG00000001892LSM59280.263ENSETEG00000010651-8280.263Echinops_telfairi
ENSFALG00000001892LSM58763.889ENSETEG00000000777-7864.384Echinops_telfairi
ENSFALG00000001892LSM58981.081ENSETEG00000016074-9881.081Echinops_telfairi
ENSFALG00000001892LSM59293.421ENSEBUG00000008540lsm58493.421Eptatretus_burgeri
ENSFALG00000001892LSM592100.000ENSEASG00005003500LSM584100.000Equus_asinus_asinus
ENSFALG00000001892LSM59282.895ENSECAG00000018445LSM58282.895Equus_caballus
ENSFALG00000001892LSM56994.737ENSEEUG00000004102LSM59594.737Erinaceus_europaeus
ENSFALG00000001892LSM59297.368ENSELUG00000007792lsm58497.368Esox_lucius
ENSFALG00000001892LSM592100.000ENSFCAG00000000230LSM584100.000Felis_catus
ENSFALG00000001892LSM592100.000ENSFDAG00000008767LSM584100.000Fukomys_damarensis
ENSFALG00000001892LSM59268.421ENSFDAG00000008685-8968.421Fukomys_damarensis
ENSFALG00000001892LSM59285.526ENSFHEG00000004011lsm58285.526Fundulus_heteroclitus
ENSFALG00000001892LSM59097.333ENSGMOG00000018235lsm58397.333Gadus_morhua
ENSFALG00000001892LSM592100.000ENSGALG00000041625LSM584100.000Gallus_gallus
ENSFALG00000001892LSM57596.774ENSGAFG00000016824lsm510096.774Gambusia_affinis
ENSFALG00000001892LSM59297.368ENSGACG00000005528lsm58497.368Gasterosteus_aculeatus
ENSFALG00000001892LSM592100.000ENSGAGG00000015593LSM584100.000Gopherus_agassizii
ENSFALG00000001892LSM592100.000ENSGGOG00000043469LSM584100.000Gorilla_gorilla
ENSFALG00000001892LSM59297.368ENSHBUG00000013773lsm58697.368Haplochromis_burtoni
ENSFALG00000001892LSM592100.000ENSHGLG00000011765LSM584100.000Heterocephalus_glaber_female
ENSFALG00000001892LSM590100.000ENSHGLG00100015610LSM584100.000Heterocephalus_glaber_male
ENSFALG00000001892LSM55491.111ENSHCOG00000008288lsm57691.111Hippocampus_comes
ENSFALG00000001892LSM59297.368ENSIPUG00000021095LSM58497.368Ictalurus_punctatus
ENSFALG00000001892LSM592100.000ENSSTOG00000012662LSM584100.000Ictidomys_tridecemlineatus
ENSFALG00000001892LSM59285.526ENSSTOG00000033886-8585.526Ictidomys_tridecemlineatus
ENSFALG00000001892LSM57579.032ENSJJAG00000016144-7579.032Jaculus_jaculus
ENSFALG00000001892LSM592100.000ENSJJAG00000012145-84100.000Jaculus_jaculus
ENSFALG00000001892LSM57793.750ENSJJAG00000004475-8193.750Jaculus_jaculus
ENSFALG00000001892LSM59296.053ENSKMAG00000021861lsm58496.053Kryptolebias_marmoratus
ENSFALG00000001892LSM58197.015ENSLBEG00000009235LSM55397.015Labrus_bergylta
ENSFALG00000001892LSM59296.053ENSLACG00000022448LSM58496.053Latimeria_chalumnae
ENSFALG00000001892LSM59297.368ENSLOCG00000012903lsm58497.368Lepisosteus_oculatus
ENSFALG00000001892LSM59272.368ENSLAFG00000027938-8172.368Loxodonta_africana
ENSFALG00000001892LSM592100.000ENSLAFG00000029579LSM584100.000Loxodonta_africana
ENSFALG00000001892LSM592100.000ENSMFAG00000038508LSM584100.000Macaca_fascicularis
ENSFALG00000001892LSM59297.368ENSMFAG00000030152-8497.368Macaca_fascicularis
ENSFALG00000001892LSM59297.368ENSMMUG00000030131-8497.368Macaca_mulatta
ENSFALG00000001892LSM59288.158ENSMMUG00000039822-8388.158Macaca_mulatta
ENSFALG00000001892LSM592100.000ENSMNEG00000015331LSM5100100.000Macaca_nemestrina
ENSFALG00000001892LSM59297.368ENSMNEG00000037935-8497.368Macaca_nemestrina
ENSFALG00000001892LSM59286.842ENSMLEG00000034037-8486.842Mandrillus_leucophaeus
ENSFALG00000001892LSM592100.000ENSMLEG00000024945LSM584100.000Mandrillus_leucophaeus
ENSFALG00000001892LSM59293.421ENSMAMG00000012869lsm58493.421Mastacembelus_armatus
ENSFALG00000001892LSM59297.368ENSMZEG00005019554lsm58697.368Maylandia_zebra
ENSFALG00000001892LSM592100.000ENSMGAG00000012117LSM584100.000Meleagris_gallopavo
ENSFALG00000001892LSM592100.000ENSMAUG00000008132-84100.000Mesocricetus_auratus
ENSFALG00000001892LSM592100.000ENSMAUG00000012222Lsm584100.000Mesocricetus_auratus
ENSFALG00000001892LSM592100.000ENSMICG00000005353LSM584100.000Microcebus_murinus
ENSFALG00000001892LSM57889.231ENSMICG00000033928-8489.231Microcebus_murinus
ENSFALG00000001892LSM592100.000ENSMOCG00000012018Lsm584100.000Microtus_ochrogaster
ENSFALG00000001892LSM59396.104ENSMMOG00000004026lsm58996.104Mola_mola
ENSFALG00000001892LSM575100.000ENSMODG00000013274-100100.000Monodelphis_domestica
ENSFALG00000001892LSM57591.935ENSMALG00000010343lsm510091.935Monopterus_albus
ENSFALG00000001892LSM592100.000MGP_CAROLIEiJ_G0028421Lsm584100.000Mus_caroli
ENSFALG00000001892LSM592100.000ENSMUSG00000091625Lsm584100.000Mus_musculus
ENSFALG00000001892LSM592100.000MGP_PahariEiJ_G0022171Lsm584100.000Mus_pahari
ENSFALG00000001892LSM592100.000MGP_SPRETEiJ_G0029423Lsm584100.000Mus_spretus
ENSFALG00000001892LSM592100.000ENSMLUG00000017028LSM584100.000Myotis_lucifugus
ENSFALG00000001892LSM59287.179ENSNGAG00000017707-8387.179Nannospalax_galili
ENSFALG00000001892LSM592100.000ENSNGAG00000024142Lsm584100.000Nannospalax_galili
ENSFALG00000001892LSM59574.684ENSNGAG00000022569-8374.684Nannospalax_galili
ENSFALG00000001892LSM56996.491ENSNBRG00000011386lsm57696.491Neolamprologus_brichardi
ENSFALG00000001892LSM592100.000ENSNLEG00000015268LSM584100.000Nomascus_leucogenys
ENSFALG00000001892LSM590100.000ENSOPRG00000002443LSM5100100.000Ochotona_princeps
ENSFALG00000001892LSM592100.000ENSODEG00000008258-84100.000Octodon_degus
ENSFALG00000001892LSM592100.000ENSODEG00000019072-84100.000Octodon_degus
ENSFALG00000001892LSM58759.722ENSOANG00000014540-9659.722Ornithorhynchus_anatinus
ENSFALG00000001892LSM592100.000ENSOCUG00000029043LSM584100.000Oryctolagus_cuniculus
ENSFALG00000001892LSM59592.405ENSORLG00020003019lsm58292.405Oryzias_latipes_hni
ENSFALG00000001892LSM59296.053ENSORLG00015003338lsm58496.053Oryzias_latipes_hsok
ENSFALG00000001892LSM59296.053ENSOMEG00000001078lsm58496.053Oryzias_melastigma
ENSFALG00000001892LSM592100.000ENSOGAG00000013892LSM584100.000Otolemur_garnettii
ENSFALG00000001892LSM592100.000ENSOARG00000006944LSM584100.000Ovis_aries
ENSFALG00000001892LSM592100.000ENSPPAG00000003697-84100.000Pan_paniscus
ENSFALG00000001892LSM592100.000ENSPPRG00000002550LSM584100.000Panthera_pardus
ENSFALG00000001892LSM592100.000ENSPTIG00000015604LSM584100.000Panthera_tigris_altaica
ENSFALG00000001892LSM592100.000ENSPTRG00000019057LSM584100.000Pan_troglodytes
ENSFALG00000001892LSM59280.263ENSPTRG00000049488-8382.895Pan_troglodytes
ENSFALG00000001892LSM59288.158ENSPANG00000032538-8388.158Papio_anubis
ENSFALG00000001892LSM592100.000ENSPANG00000032179-84100.000Papio_anubis
ENSFALG00000001892LSM59297.368ENSPANG00000033477-8497.368Papio_anubis
ENSFALG00000001892LSM59297.368ENSPKIG00000011910lsm58497.368Paramormyrops_kingsleyae
ENSFALG00000001892LSM589100.000ENSPSIG00000014796LSM5100100.000Pelodiscus_sinensis
ENSFALG00000001892LSM57596.774ENSPMGG00000011699lsm510096.774Periophthalmus_magnuspinnatus
ENSFALG00000001892LSM59570.886ENSPEMG00000022375-8570.886Peromyscus_maniculatus_bairdii
ENSFALG00000001892LSM59297.368ENSPFOG00000001433lsm58497.368Poecilia_formosa
ENSFALG00000001892LSM59297.368ENSPLAG00000009665lsm58497.368Poecilia_latipinna
ENSFALG00000001892LSM59297.368ENSPMEG00000022265lsm58497.368Poecilia_mexicana
ENSFALG00000001892LSM57596.774ENSPREG00000022452lsm510096.774Poecilia_reticulata
ENSFALG00000001892LSM59296.053ENSPPYG00000017661LSM58496.053Pongo_abelii
ENSFALG00000001892LSM580100.000ENSPCAG00000013740LSM581100.000Procavia_capensis
ENSFALG00000001892LSM592100.000ENSPVAG00000009786LSM584100.000Pteropus_vampyrus
ENSFALG00000001892LSM59297.368ENSPNYG00000022236lsm58697.368Pundamilia_nyererei
ENSFALG00000001892LSM59297.368ENSPNAG00000001887lsm58497.368Pygocentrus_nattereri
ENSFALG00000001892LSM59297.403ENSRNOG00000027305AABR07065089.18497.403Rattus_norvegicus
ENSFALG00000001892LSM592100.000ENSRNOG00000042126Lsm584100.000Rattus_norvegicus
ENSFALG00000001892LSM59298.684ENSRBIG00000024431-8498.684Rhinopithecus_bieti
ENSFALG00000001892LSM592100.000ENSRBIG00000030340-84100.000Rhinopithecus_bieti
ENSFALG00000001892LSM592100.000ENSRBIG00000030714-84100.000Rhinopithecus_bieti
ENSFALG00000001892LSM592100.000ENSRBIG00000027803-100100.000Rhinopithecus_bieti
ENSFALG00000001892LSM592100.000ENSRROG00000023884-84100.000Rhinopithecus_roxellana
ENSFALG00000001892LSM592100.000ENSRROG00000004655-84100.000Rhinopithecus_roxellana
ENSFALG00000001892LSM592100.000ENSRROG00000042782-100100.000Rhinopithecus_roxellana
ENSFALG00000001892LSM58750.649YER146W-8350.649Saccharomyces_cerevisiae
ENSFALG00000001892LSM57889.231ENSSBOG00000034794-8189.231Saimiri_boliviensis_boliviensis
ENSFALG00000001892LSM59298.684ENSSBOG00000019124-8498.684Saimiri_boliviensis_boliviensis
ENSFALG00000001892LSM592100.000ENSSBOG00000012312LSM584100.000Saimiri_boliviensis_boliviensis
ENSFALG00000001892LSM59297.368ENSSFOG00015010099lsm58497.368Scleropages_formosus
ENSFALG00000001892LSM55493.333ENSSMAG00000007895lsm57693.333Scophthalmus_maximus
ENSFALG00000001892LSM57596.774ENSSDUG00000010762lsm510096.774Seriola_dumerili
ENSFALG00000001892LSM59297.368ENSSLDG00000025242lsm58497.368Seriola_lalandi_dorsalis
ENSFALG00000001892LSM58779.167ENSSLDG00000008014-8679.167Seriola_lalandi_dorsalis
ENSFALG00000001892LSM59267.105ENSSARG00000003330LSM58467.105Sorex_araneus
ENSFALG00000001892LSM59298.684ENSSPUG00000002690LSM510098.387Sphenodon_punctatus
ENSFALG00000001892LSM55493.333ENSSPAG00000005435lsm57693.333Stegastes_partitus
ENSFALG00000001892LSM56190.196ENSSSCG00000029661-7588.889Sus_scrofa
ENSFALG00000001892LSM59597.468ENSSSCG00000026064-84100.000Sus_scrofa
ENSFALG00000001892LSM592100.000ENSTGUG00000017539LSM584100.000Taeniopygia_guttata
ENSFALG00000001892LSM58187.500ENSTRUG00000017749lsm55687.500Takifugu_rubripes
ENSFALG00000001892LSM59296.053ENSTNIG00000008695lsm58696.053Tetraodon_nigroviridis
ENSFALG00000001892LSM592100.000ENSTBEG00000004876LSM584100.000Tupaia_belangeri
ENSFALG00000001892LSM592100.000ENSTTRG00000004237LSM584100.000Tursiops_truncatus
ENSFALG00000001892LSM590100.000ENSUMAG00000002625LSM554100.000Ursus_maritimus
ENSFALG00000001892LSM592100.000ENSVPAG00000009985LSM584100.000Vicugna_pacos
ENSFALG00000001892LSM592100.000ENSVVUG00000021311LSM584100.000Vulpes_vulpes
ENSFALG00000001892LSM58198.507ENSXETG00000026465lsm58298.507Xenopus_tropicalis
ENSFALG00000001892LSM57596.774ENSXCOG00000015348lsm510096.774Xiphophorus_couchianus
ENSFALG00000001892LSM59297.368ENSXMAG00000029988lsm58497.368Xiphophorus_maculatus

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