EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFALG00000002232 (Gene tree)
Gene ID: -
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Minus strand
Length: 29764 bases
Position: chrJH603219.1:3531662-3561425
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000002321	TruB_N	PF01509.18	1.8e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000002333	TRUB1-201	839	-	ENSFALP00000002321	258 (aa)	-	U3JHR7

Gene Model

Click here to download ENSFALG00000002232's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000002232's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000002232	TRUB1	92	76.250	ENSG00000165832	TRUB1	66	78.355	Homo_sapiens
ENSFALG00000002232	TRUB1	83	69.907	ENSAPOG00000020565	trub1	80	69.058	Acanthochromis_polyacanthus
ENSFALG00000002232	TRUB1	92	75.620	ENSAMEG00000014931	TRUB1	69	75.620	Ailuropoda_melanoleuca
ENSFALG00000002232	TRUB1	90	60.084	ENSACIG00000003060	trub1	75	66.337	Amphilophus_citrinellus
ENSFALG00000002232	TRUB1	83	69.907	ENSAOCG00000017188	trub1	79	69.907	Amphiprion_ocellaris
ENSFALG00000002232	TRUB1	83	69.444	ENSAPEG00000015209	trub1	79	69.444	Amphiprion_percula
ENSFALG00000002232	TRUB1	84	68.493	ENSATEG00000023291	trub1	78	68.493	Anabas_testudineus
ENSFALG00000002232	TRUB1	92	89.540	ENSAPLG00000006808	TRUB1	86	89.540	Anas_platyrhynchos
ENSFALG00000002232	TRUB1	91	75.527	ENSACAG00000009282	TRUB1	86	75.527	Anolis_carolinensis
ENSFALG00000002232	TRUB1	92	76.250	ENSANAG00000022870	TRUB1	68	76.250	Aotus_nancymaae
ENSFALG00000002232	TRUB1	92	65.272	ENSACLG00000000823	trub1	83	65.272	Astatotilapia_calliptera
ENSFALG00000002232	TRUB1	83	68.837	ENSAMXG00000015845	trub1	72	68.837	Astyanax_mexicanus
ENSFALG00000002232	TRUB1	92	75.833	ENSBTAG00000012955	TRUB1	68	75.833	Bos_taurus
ENSFALG00000002232	TRUB1	92	76.250	ENSCJAG00000047815	TRUB1	68	76.250	Callithrix_jacchus
ENSFALG00000002232	TRUB1	92	77.083	ENSCAFG00000011688	TRUB1	69	77.083	Canis_familiaris
ENSFALG00000002232	TRUB1	92	77.083	ENSCAFG00020013237	TRUB1	69	77.083	Canis_lupus_dingo
ENSFALG00000002232	TRUB1	92	75.833	ENSCHIG00000020884	TRUB1	72	75.833	Capra_hircus
ENSFALG00000002232	TRUB1	92	75.833	ENSTSYG00000000446	TRUB1	68	75.833	Carlito_syrichta
ENSFALG00000002232	TRUB1	88	68.722	ENSCAPG00000017088	TRUB1	89	68.722	Cavia_aperea
ENSFALG00000002232	TRUB1	60	74.522	ENSCPOG00000030129	-	61	74.522	Cavia_porcellus
ENSFALG00000002232	TRUB1	59	75.817	ENSCPOG00000040236	-	63	75.817	Cavia_porcellus
ENSFALG00000002232	TRUB1	92	76.250	ENSCCAG00000028842	TRUB1	68	76.250	Cebus_capucinus
ENSFALG00000002232	TRUB1	92	75.833	ENSCATG00000033431	TRUB1	69	75.833	Cercocebus_atys
ENSFALG00000002232	TRUB1	59	74.510	ENSCLAG00000008664	TRUB1	63	74.510	Chinchilla_lanigera
ENSFALG00000002232	TRUB1	92	76.250	ENSCSAG00000004891	TRUB1	69	76.250	Chlorocebus_sabaeus
ENSFALG00000002232	TRUB1	89	66.667	ENSCHOG00000011931	TRUB1	66	66.667	Choloepus_hoffmanni
ENSFALG00000002232	TRUB1	93	82.645	ENSCPBG00000003051	TRUB1	84	82.645	Chrysemys_picta_bellii
ENSFALG00000002232	TRUB1	92	76.250	ENSCANG00000029445	TRUB1	69	76.250	Colobus_angolensis_palliatus
ENSFALG00000002232	TRUB1	91	68.220	ENSCGRG00001010322	-	64	68.067	Cricetulus_griseus_chok1gshd
ENSFALG00000002232	TRUB1	90	76.170	ENSCGRG00001016772	-	79	75.527	Cricetulus_griseus_chok1gshd
ENSFALG00000002232	TRUB1	91	76.050	ENSCGRG00000010806	Trub1	73	76.050	Cricetulus_griseus_crigri
ENSFALG00000002232	TRUB1	83	66.047	ENSCSEG00000011261	trub1	70	66.047	Cynoglossus_semilaevis
ENSFALG00000002232	TRUB1	83	68.519	ENSCVAG00000008791	trub1	66	68.519	Cyprinodon_variegatus
ENSFALG00000002232	TRUB1	91	66.525	ENSDARG00000053805	trub1	81	66.525	Danio_rerio
ENSFALG00000002232	TRUB1	92	74.583	ENSDNOG00000001069	TRUB1	68	74.583	Dasypus_novemcinctus
ENSFALG00000002232	TRUB1	88	77.974	ENSDORG00000010431	Trub1	66	77.974	Dipodomys_ordii
ENSFALG00000002232	TRUB1	92	76.250	ENSEASG00005014739	TRUB1	69	76.250	Equus_asinus_asinus
ENSFALG00000002232	TRUB1	92	76.250	ENSECAG00000007177	TRUB1	69	76.250	Equus_caballus
ENSFALG00000002232	TRUB1	92	65.417	ENSEEUG00000013993	TRUB1	67	65.417	Erinaceus_europaeus
ENSFALG00000002232	TRUB1	83	68.837	ENSELUG00000000502	trub1	75	68.837	Esox_lucius
ENSFALG00000002232	TRUB1	92	77.500	ENSFCAG00000031927	TRUB1	69	77.500	Felis_catus
ENSFALG00000002232	TRUB1	59	76.471	ENSFDAG00000008140	TRUB1	63	76.471	Fukomys_damarensis
ENSFALG00000002232	TRUB1	83	68.519	ENSFHEG00000004016	trub1	74	68.519	Fundulus_heteroclitus
ENSFALG00000002232	TRUB1	93	86.364	ENSGALG00000009091	TRUB1	96	86.124	Gallus_gallus
ENSFALG00000002232	TRUB1	82	65.888	ENSGAFG00000009193	trub1	75	65.888	Gambusia_affinis
ENSFALG00000002232	TRUB1	76	68.205	ENSGACG00000015387	trub1	96	68.205	Gasterosteus_aculeatus
ENSFALG00000002232	TRUB1	93	82.231	ENSGAGG00000009758	TRUB1	69	82.231	Gopherus_agassizii
ENSFALG00000002232	TRUB1	92	76.667	ENSGGOG00000004583	TRUB1	66	78.788	Gorilla_gorilla
ENSFALG00000002232	TRUB1	92	65.272	ENSHBUG00000016787	trub1	83	65.272	Haplochromis_burtoni
ENSFALG00000002232	TRUB1	92	72.083	ENSHGLG00000015314	TRUB1	69	72.083	Heterocephalus_glaber_female
ENSFALG00000002232	TRUB1	59	75.817	ENSHGLG00100009183	TRUB1	65	75.817	Heterocephalus_glaber_male
ENSFALG00000002232	TRUB1	83	67.907	ENSHCOG00000017877	trub1	78	67.907	Hippocampus_comes
ENSFALG00000002232	TRUB1	83	68.981	ENSIPUG00000017559	trub1	76	68.981	Ictalurus_punctatus
ENSFALG00000002232	TRUB1	92	75.000	ENSSTOG00000003641	TRUB1	72	75.000	Ictidomys_tridecemlineatus
ENSFALG00000002232	TRUB1	93	74.689	ENSJJAG00000011800	Trub1	71	74.689	Jaculus_jaculus
ENSFALG00000002232	TRUB1	83	68.981	ENSKMAG00000006232	trub1	78	68.981	Kryptolebias_marmoratus
ENSFALG00000002232	TRUB1	91	63.445	ENSLBEG00000026722	trub1	81	64.224	Labrus_bergylta
ENSFALG00000002232	TRUB1	89	77.391	ENSLACG00000014885	TRUB1	77	77.391	Latimeria_chalumnae
ENSFALG00000002232	TRUB1	89	73.478	ENSLOCG00000012979	trub1	78	73.478	Lepisosteus_oculatus
ENSFALG00000002232	TRUB1	84	77.169	ENSLAFG00000015452	TRUB1	67	74.894	Loxodonta_africana
ENSFALG00000002232	TRUB1	92	76.250	ENSMFAG00000031767	TRUB1	69	76.250	Macaca_fascicularis
ENSFALG00000002232	TRUB1	92	76.250	ENSMMUG00000001902	TRUB1	69	76.250	Macaca_mulatta
ENSFALG00000002232	TRUB1	92	70.833	ENSMNEG00000044646	TRUB1	68	70.833	Macaca_nemestrina
ENSFALG00000002232	TRUB1	92	76.250	ENSMLEG00000042655	TRUB1	69	76.250	Mandrillus_leucophaeus
ENSFALG00000002232	TRUB1	92	65.272	ENSMZEG00005024095	trub1	83	65.272	Maylandia_zebra
ENSFALG00000002232	TRUB1	91	86.076	ENSMGAG00000011135	TRUB1	82	86.076	Meleagris_gallopavo
ENSFALG00000002232	TRUB1	91	73.950	ENSMAUG00000011101	Trub1	70	73.950	Mesocricetus_auratus
ENSFALG00000002232	TRUB1	92	76.667	ENSMICG00000016324	TRUB1	69	76.667	Microcebus_murinus
ENSFALG00000002232	TRUB1	89	76.623	ENSMOCG00000017759	Trub1	70	76.623	Microtus_ochrogaster
ENSFALG00000002232	TRUB1	93	79.424	ENSMODG00000009676	TRUB1	67	79.424	Monodelphis_domestica
ENSFALG00000002232	TRUB1	93	72.199	MGP_CAROLIEiJ_G0023100	Trub1	71	72.199	Mus_caroli
ENSFALG00000002232	TRUB1	93	71.369	ENSMUSG00000025086	Trub1	71	71.369	Mus_musculus
ENSFALG00000002232	TRUB1	93	71.784	MGP_PahariEiJ_G0014588	Trub1	71	71.784	Mus_pahari
ENSFALG00000002232	TRUB1	93	71.784	MGP_SPRETEiJ_G0024021	Trub1	71	71.784	Mus_spretus
ENSFALG00000002232	TRUB1	92	77.083	ENSMPUG00000003556	TRUB1	69	77.083	Mustela_putorius_furo
ENSFALG00000002232	TRUB1	92	76.667	ENSMLUG00000017686	TRUB1	71	76.667	Myotis_lucifugus
ENSFALG00000002232	TRUB1	92	76.667	ENSNGAG00000018682	Trub1	69	76.667	Nannospalax_galili
ENSFALG00000002232	TRUB1	83	69.907	ENSNBRG00000023393	trub1	77	69.907	Neolamprologus_brichardi
ENSFALG00000002232	TRUB1	92	76.667	ENSNLEG00000016345	TRUB1	66	78.788	Nomascus_leucogenys
ENSFALG00000002232	TRUB1	66	80.814	ENSMEUG00000006603	TRUB1	64	80.814	Notamacropus_eugenii
ENSFALG00000002232	TRUB1	92	73.333	ENSOPRG00000009371	TRUB1	70	73.333	Ochotona_princeps
ENSFALG00000002232	TRUB1	92	71.667	ENSODEG00000010854	TRUB1	69	71.667	Octodon_degus
ENSFALG00000002232	TRUB1	83	69.444	ENSONIG00000007249	trub1	79	69.444	Oreochromis_niloticus
ENSFALG00000002232	TRUB1	93	77.366	ENSOANG00000001556	TRUB1	80	77.366	Ornithorhynchus_anatinus
ENSFALG00000002232	TRUB1	92	73.750	ENSOCUG00000009456	TRUB1	69	73.750	Oryctolagus_cuniculus
ENSFALG00000002232	TRUB1	81	68.396	ENSORLG00000029719	trub1	76	68.396	Oryzias_latipes
ENSFALG00000002232	TRUB1	81	67.925	ENSORLG00020016767	trub1	75	67.925	Oryzias_latipes_hni
ENSFALG00000002232	TRUB1	81	68.396	ENSORLG00015014728	trub1	76	68.396	Oryzias_latipes_hsok
ENSFALG00000002232	TRUB1	82	68.075	ENSOMEG00000014556	trub1	75	68.075	Oryzias_melastigma
ENSFALG00000002232	TRUB1	92	77.083	ENSOGAG00000015895	TRUB1	69	77.083	Otolemur_garnettii
ENSFALG00000002232	TRUB1	88	77.293	ENSOARG00000015591	TRUB1	65	77.293	Ovis_aries
ENSFALG00000002232	TRUB1	89	78.788	ENSPPAG00000043645	TRUB1	66	78.788	Pan_paniscus
ENSFALG00000002232	TRUB1	92	76.667	ENSPPRG00000007096	TRUB1	69	76.667	Panthera_pardus
ENSFALG00000002232	TRUB1	92	77.083	ENSPTIG00000006378	TRUB1	69	77.083	Panthera_tigris_altaica
ENSFALG00000002232	TRUB1	89	78.788	ENSPTRG00000002964	TRUB1	66	78.788	Pan_troglodytes
ENSFALG00000002232	TRUB1	92	76.250	ENSPANG00000020712	TRUB1	69	76.250	Papio_anubis
ENSFALG00000002232	TRUB1	67	67.630	ENSPKIG00000003852	trub1	74	67.630	Paramormyrops_kingsleyae
ENSFALG00000002232	TRUB1	93	81.405	ENSPSIG00000012877	TRUB1	83	81.405	Pelodiscus_sinensis
ENSFALG00000002232	TRUB1	83	66.977	ENSPMGG00000000075	trub1	77	66.977	Periophthalmus_magnuspinnatus
ENSFALG00000002232	TRUB1	91	75.210	ENSPEMG00000011156	Trub1	70	75.210	Peromyscus_maniculatus_bairdii
ENSFALG00000002232	TRUB1	94	78.367	ENSPCIG00000009729	TRUB1	67	78.367	Phascolarctos_cinereus
ENSFALG00000002232	TRUB1	83	67.442	ENSPFOG00000009950	trub1	79	67.442	Poecilia_formosa
ENSFALG00000002232	TRUB1	83	67.442	ENSPLAG00000013855	trub1	75	67.442	Poecilia_latipinna
ENSFALG00000002232	TRUB1	83	67.442	ENSPMEG00000009064	trub1	78	67.442	Poecilia_mexicana
ENSFALG00000002232	TRUB1	83	69.767	ENSPREG00000003343	trub1	78	69.767	Poecilia_reticulata
ENSFALG00000002232	TRUB1	92	76.250	ENSPPYG00000002676	TRUB1	66	78.355	Pongo_abelii
ENSFALG00000002232	TRUB1	92	65.833	ENSPCAG00000008427	TRUB1	68	65.833	Procavia_capensis
ENSFALG00000002232	TRUB1	92	70.417	ENSPCOG00000024360	TRUB1	67	70.417	Propithecus_coquereli
ENSFALG00000002232	TRUB1	66	79.651	ENSPVAG00000007575	TRUB1	65	79.651	Pteropus_vampyrus
ENSFALG00000002232	TRUB1	92	65.272	ENSPNYG00000018614	trub1	83	65.272	Pundamilia_nyererei
ENSFALG00000002232	TRUB1	69	71.508	ENSPNAG00000006881	trub1	67	71.508	Pygocentrus_nattereri
ENSFALG00000002232	TRUB1	93	72.199	ENSRNOG00000017321	Trub1	71	72.199	Rattus_norvegicus
ENSFALG00000002232	TRUB1	92	66.667	ENSRBIG00000033423	TRUB1	66	66.667	Rhinopithecus_bieti
ENSFALG00000002232	TRUB1	92	76.250	ENSRROG00000033902	TRUB1	69	76.250	Rhinopithecus_roxellana
ENSFALG00000002232	TRUB1	92	76.250	ENSSBOG00000024237	TRUB1	68	76.250	Saimiri_boliviensis_boliviensis
ENSFALG00000002232	TRUB1	93	78.689	ENSSHAG00000009346	TRUB1	82	78.689	Sarcophilus_harrisii
ENSFALG00000002232	TRUB1	82	72.770	ENSSFOG00015022124	trub1	73	72.770	Scleropages_formosus
ENSFALG00000002232	TRUB1	83	68.056	ENSSMAG00000001020	trub1	77	68.056	Scophthalmus_maximus
ENSFALG00000002232	TRUB1	83	68.519	ENSSDUG00000016414	trub1	78	68.519	Seriola_dumerili
ENSFALG00000002232	TRUB1	83	68.981	ENSSLDG00000015486	trub1	78	68.981	Seriola_lalandi_dorsalis
ENSFALG00000002232	TRUB1	93	82.231	ENSSPUG00000001642	TRUB1	83	82.231	Sphenodon_punctatus
ENSFALG00000002232	TRUB1	89	67.100	ENSSPAG00000001217	trub1	83	67.100	Stegastes_partitus
ENSFALG00000002232	TRUB1	92	74.167	ENSSSCG00000010653	TRUB1	69	75.319	Sus_scrofa
ENSFALG00000002232	TRUB1	92	95.798	ENSTGUG00000010971	TRUB1	85	95.798	Taeniopygia_guttata
ENSFALG00000002232	TRUB1	88	64.758	ENSTBEG00000002880	TRUB1	89	64.758	Tupaia_belangeri
ENSFALG00000002232	TRUB1	66	77.907	ENSTTRG00000005767	TRUB1	66	77.907	Tursiops_truncatus
ENSFALG00000002232	TRUB1	92	77.083	ENSUAMG00000024876	TRUB1	69	77.083	Ursus_americanus
ENSFALG00000002232	TRUB1	92	76.667	ENSUMAG00000002411	TRUB1	71	76.667	Ursus_maritimus
ENSFALG00000002232	TRUB1	92	78.333	ENSVPAG00000005507	TRUB1	69	78.333	Vicugna_pacos
ENSFALG00000002232	TRUB1	92	77.083	ENSVVUG00000010085	TRUB1	58	77.083	Vulpes_vulpes
ENSFALG00000002232	TRUB1	91	68.803	ENSXETG00000023828	trub1	85	68.803	Xenopus_tropicalis
ENSFALG00000002232	TRUB1	82	67.136	ENSXCOG00000017847	trub1	75	67.136	Xiphophorus_couchianus
ENSFALG00000002232	TRUB1	83	66.977	ENSXMAG00000014701	trub1	78	66.977	Xiphophorus_maculatus