EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFALG00000002947 (Gene tree)
Gene ID: -
Gene Symbol: RC3H1
Alias: KIAA2025|RNF198|RP5-1198E17.5|roquin
Full Name: ring finger and CCCH-type domains 1
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 53738 bases
Position: chrJH603197.1:6669083-6722820
Accession: 29434
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000003093	zf-CCCH	PF00642.24	0.0001	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000003106	RC3H1-201	3965	-	ENSFALP00000003093	1140 (aa)	-	U3JJY9

Gene Model

Click here to download ENSFALG00000002947's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000002947's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFALG00000002947	RC3H1	97	51.159	ENSFALG00000002011	RC3H2	93	51.718

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000002947	RC3H1	100	86.900	ENSG00000135870	RC3H1	100	87.424	Homo_sapiens
ENSFALG00000002947	RC3H1	100	86.702	ENSAMEG00000015657	RC3H1	100	87.325	Ailuropoda_melanoleuca
ENSFALG00000002947	RC3H1	100	94.415	ENSAPLG00000005341	RC3H1	100	94.415	Anas_platyrhynchos
ENSFALG00000002947	RC3H1	100	84.408	ENSACAG00000015271	RC3H1	100	84.669	Anolis_carolinensis
ENSFALG00000002947	RC3H1	100	86.463	ENSANAG00000036716	RC3H1	100	87.074	Aotus_nancymaae
ENSFALG00000002947	RC3H1	100	85.315	ENSBTAG00000052708	RC3H1	100	86.463	Bos_taurus
ENSFALG00000002947	RC3H1	100	86.201	ENSCJAG00000009106	RC3H1	100	86.812	Callithrix_jacchus
ENSFALG00000002947	RC3H1	100	85.914	ENSCAFG00000014434	RC3H1	100	87.063	Canis_familiaris
ENSFALG00000002947	RC3H1	100	85.839	ENSCAFG00020017112	RC3H1	99	97.528	Canis_lupus_dingo
ENSFALG00000002947	RC3H1	100	85.564	ENSCHIG00000002873	RC3H1	100	86.713	Capra_hircus
ENSFALG00000002947	RC3H1	99	84.427	ENSTSYG00000003913	RC3H1	99	85.490	Carlito_syrichta
ENSFALG00000002947	RC3H1	100	84.077	ENSCPOG00000004349	RC3H1	100	84.077	Cavia_porcellus
ENSFALG00000002947	RC3H1	100	84.891	ENSCCAG00000025652	RC3H1	100	85.502	Cebus_capucinus
ENSFALG00000002947	RC3H1	100	86.987	ENSCATG00000033497	RC3H1	100	87.511	Cercocebus_atys
ENSFALG00000002947	RC3H1	100	85.490	ENSCLAG00000011267	RC3H1	100	86.014	Chinchilla_lanigera
ENSFALG00000002947	RC3H1	96	87.386	ENSCSAG00000011823	RC3H1	84	87.934	Chlorocebus_sabaeus
ENSFALG00000002947	RC3H1	93	96.522	ENSCPBG00000014670	RC3H1	100	96.522	Chrysemys_picta_bellii
ENSFALG00000002947	RC3H1	100	87.074	ENSCANG00000032120	RC3H1	100	87.598	Colobus_angolensis_palliatus
ENSFALG00000002947	RC3H1	100	84.501	ENSCGRG00001020812	Rc3h1	100	85.127	Cricetulus_griseus_chok1gshd
ENSFALG00000002947	RC3H1	100	84.501	ENSCGRG00000011952	Rc3h1	100	85.127	Cricetulus_griseus_crigri
ENSFALG00000002947	RC3H1	55	78.673	ENSDNOG00000011494	RC3H1	99	79.621	Dasypus_novemcinctus
ENSFALG00000002947	RC3H1	100	85.389	ENSDORG00000004855	Rc3h1	100	85.927	Dipodomys_ordii
ENSFALG00000002947	RC3H1	81	86.088	ENSETEG00000012064	RC3H1	87	86.936	Echinops_telfairi
ENSFALG00000002947	RC3H1	100	84.427	ENSEASG00005017000	RC3H1	100	85.577	Equus_asinus_asinus
ENSFALG00000002947	RC3H1	100	84.339	ENSECAG00000021208	RC3H1	100	85.490	Equus_caballus
ENSFALG00000002947	RC3H1	89	81.076	ENSEEUG00000014861	RC3H1	93	81.076	Erinaceus_europaeus
ENSFALG00000002947	RC3H1	100	86.276	ENSFCAG00000014924	RC3H1	100	87.424	Felis_catus
ENSFALG00000002947	RC3H1	100	85.927	ENSFDAG00000013303	RC3H1	100	86.364	Fukomys_damarensis
ENSFALG00000002947	RC3H1	100	93.246	ENSGALG00000004587	RC3H1	100	93.246	Gallus_gallus
ENSFALG00000002947	RC3H1	100	87.424	ENSGAGG00000018194	RC3H1	100	87.336	Gopherus_agassizii
ENSFALG00000002947	RC3H1	100	80.679	ENSGGOG00000005735	RC3H1	100	81.201	Gorilla_gorilla
ENSFALG00000002947	RC3H1	88	81.646	ENSHGLG00000004183	-	99	81.646	Heterocephalus_glaber_female
ENSFALG00000002947	RC3H1	100	84.965	ENSHGLG00100008577	RC3H1	100	85.490	Heterocephalus_glaber_male
ENSFALG00000002947	RC3H1	100	85.989	ENSSTOG00000016033	RC3H1	100	86.626	Ictidomys_tridecemlineatus
ENSFALG00000002947	RC3H1	100	84.689	ENSJJAG00000018915	Rc3h1	100	85.315	Jaculus_jaculus
ENSFALG00000002947	RC3H1	100	73.010	ENSLACG00000016186	RC3H1	100	76.514	Latimeria_chalumnae
ENSFALG00000002947	RC3H1	97	86.269	ENSLAFG00000004367	RC3H1	99	87.455	Loxodonta_africana
ENSFALG00000002947	RC3H1	100	86.812	ENSMFAG00000033725	RC3H1	100	87.336	Macaca_fascicularis
ENSFALG00000002947	RC3H1	100	86.812	ENSMMUG00000000630	RC3H1	100	87.336	Macaca_mulatta
ENSFALG00000002947	RC3H1	100	86.900	ENSMNEG00000035968	RC3H1	100	87.424	Macaca_nemestrina
ENSFALG00000002947	RC3H1	100	86.987	ENSMLEG00000037455	RC3H1	100	87.511	Mandrillus_leucophaeus
ENSFALG00000002947	RC3H1	88	84.746	ENSMAUG00000020864	Rc3h1	94	85.458	Mesocricetus_auratus
ENSFALG00000002947	RC3H1	100	85.827	ENSMICG00000003000	RC3H1	100	86.976	Microcebus_murinus
ENSFALG00000002947	RC3H1	93	82.817	ENSMOCG00000016587	Rc3h1	98	83.490	Microtus_ochrogaster
ENSFALG00000002947	RC3H1	100	85.490	ENSMODG00000004289	RC3H1	100	86.475	Monodelphis_domestica
ENSFALG00000002947	RC3H1	100	84.952	MGP_CAROLIEiJ_G0014756	Rc3h1	100	85.127	Mus_caroli
ENSFALG00000002947	RC3H1	100	85.039	ENSMUSG00000040423	Rc3h1	100	85.039	Mus_musculus
ENSFALG00000002947	RC3H1	100	85.039	MGP_PahariEiJ_G0027992	Rc3h1	100	85.039	Mus_pahari
ENSFALG00000002947	RC3H1	100	85.039	MGP_SPRETEiJ_G0015563	Rc3h1	100	85.039	Mus_spretus
ENSFALG00000002947	RC3H1	100	86.515	ENSMPUG00000004747	RC3H1	100	87.139	Mustela_putorius_furo
ENSFALG00000002947	RC3H1	100	84.588	ENSMLUG00000011127	RC3H1	100	85.739	Myotis_lucifugus
ENSFALG00000002947	RC3H1	100	85.289	ENSNGAG00000011135	Rc3h1	100	85.914	Nannospalax_galili
ENSFALG00000002947	RC3H1	100	87.074	ENSNLEG00000015327	RC3H1	100	87.598	Nomascus_leucogenys
ENSFALG00000002947	RC3H1	99	73.795	ENSOPRG00000013068	RC3H1	99	74.606	Ochotona_princeps
ENSFALG00000002947	RC3H1	100	86.101	ENSODEG00000014185	RC3H1	100	86.101	Octodon_degus
ENSFALG00000002947	RC3H1	100	86.753	ENSOANG00000000924	RC3H1	100	86.926	Ornithorhynchus_anatinus
ENSFALG00000002947	RC3H1	99	85.537	ENSOCUG00000004930	RC3H1	98	86.702	Oryctolagus_cuniculus
ENSFALG00000002947	RC3H1	100	79.651	ENSOGAG00000004044	RC3H1	100	80.279	Otolemur_garnettii
ENSFALG00000002947	RC3H1	100	86.087	ENSOARG00000013011	RC3H1	100	87.228	Ovis_aries
ENSFALG00000002947	RC3H1	100	87.074	ENSPPAG00000039253	RC3H1	100	87.598	Pan_paniscus
ENSFALG00000002947	RC3H1	100	85.477	ENSPPRG00000009007	RC3H1	100	86.626	Panthera_pardus
ENSFALG00000002947	RC3H1	100	86.638	ENSPTIG00000015326	RC3H1	100	87.260	Panthera_tigris_altaica
ENSFALG00000002947	RC3H1	100	87.074	ENSPTRG00000001702	RC3H1	100	87.598	Pan_troglodytes
ENSFALG00000002947	RC3H1	100	86.812	ENSPANG00000008886	RC3H1	100	87.336	Papio_anubis
ENSFALG00000002947	RC3H1	100	88.646	ENSPSIG00000016181	RC3H1	100	88.646	Pelodiscus_sinensis
ENSFALG00000002947	RC3H1	100	85.026	ENSPEMG00000011966	Rc3h1	100	85.302	Peromyscus_maniculatus_bairdii
ENSFALG00000002947	RC3H1	71	86.173	ENSPCIG00000002058	RC3H1	95	98.206	Phascolarctos_cinereus
ENSFALG00000002947	RC3H1	100	84.716	ENSPPYG00000000490	RC3H1	98	87.335	Pongo_abelii
ENSFALG00000002947	RC3H1	81	94.737	ENSPCAG00000010775	RC3H1	87	94.737	Procavia_capensis
ENSFALG00000002947	RC3H1	83	83.615	ENSPCOG00000021795	RC3H1	96	85.005	Propithecus_coquereli
ENSFALG00000002947	RC3H1	100	78.040	ENSPVAG00000007593	RC3H1	100	79.196	Pteropus_vampyrus
ENSFALG00000002947	RC3H1	97	60.752	ENSPNAG00000023439	rc3h1a	95	90.991	Pygocentrus_nattereri
ENSFALG00000002947	RC3H1	100	86.987	ENSRBIG00000037743	RC3H1	100	87.511	Rhinopithecus_bieti
ENSFALG00000002947	RC3H1	100	86.812	ENSRROG00000036546	RC3H1	100	87.336	Rhinopithecus_roxellana
ENSFALG00000002947	RC3H1	93	77.218	ENSSBOG00000010664	RC3H1	100	80.600	Saimiri_boliviensis_boliviensis
ENSFALG00000002947	RC3H1	100	85.153	ENSSHAG00000007589	RC3H1	100	85.428	Sarcophilus_harrisii
ENSFALG00000002947	RC3H1	87	86.486	ENSSARG00000004660	RC3H1	86	86.486	Sorex_araneus
ENSFALG00000002947	RC3H1	100	84.991	ENSSPUG00000018472	RC3H1	100	84.716	Sphenodon_punctatus
ENSFALG00000002947	RC3H1	100	86.527	ENSSSCG00000015498	RC3H1	100	87.675	Sus_scrofa
ENSFALG00000002947	RC3H1	100	97.281	ENSTGUG00000004090	RC3H1	100	97.281	Taeniopygia_guttata
ENSFALG00000002947	RC3H1	88	89.595	ENSTBEG00000005015	RC3H1	89	90.013	Tupaia_belangeri
ENSFALG00000002947	RC3H1	100	85.515	ENSTTRG00000008572	RC3H1	100	86.661	Tursiops_truncatus
ENSFALG00000002947	RC3H1	100	86.002	ENSUAMG00000019525	RC3H1	100	86.626	Ursus_americanus
ENSFALG00000002947	RC3H1	100	86.702	ENSUMAG00000020087	RC3H1	100	87.325	Ursus_maritimus
ENSFALG00000002947	RC3H1	91	97.973	ENSVPAG00000002591	RC3H1	92	97.973	Vicugna_pacos
ENSFALG00000002947	RC3H1	100	85.789	ENSVVUG00000014201	RC3H1	93	96.239	Vulpes_vulpes
ENSFALG00000002947	RC3H1	100	77.730	ENSXETG00000020030	rc3h1	100	77.643	Xenopus_tropicalis