EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFALG00000003911 (Gene tree)
Gene ID: -
Gene Symbol: PARN
Alias: DAN
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Minus strand
Length: 48087 bases
Position: chrJH603203.1:2236827-2284913
Accession: 8609
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000004077	R3H	PF01424.22	1.2e-05	1	1
ENSFALP00000004077	RNA_bind	PF08675.11	4.5e-33	1	1
ENSFALP00000004077	CAF1	PF04857.20	1.1e-88	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000004096	PARN-201	3202	-	ENSFALP00000004077	644 (aa)	-	U3JMS3

Gene Model

Click here to download ENSFALG00000003911's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000003911's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000003911	PARN	98	83.703	ENSG00000140694	PARN	98	88.462	Homo_sapiens
ENSFALG00000003911	PARN	98	81.487	ENSAMEG00000011208	PARN	99	81.487	Ailuropoda_melanoleuca
ENSFALG00000003911	PARN	85	73.874	ENSACIG00000000619	parn	86	73.333	Amphilophus_citrinellus
ENSFALG00000003911	PARN	93	70.413	ENSAOCG00000003465	parn	83	72.337	Amphiprion_ocellaris
ENSFALG00000003911	PARN	73	77.801	ENSAPEG00000010661	parn	91	77.378	Amphiprion_percula
ENSFALG00000003911	PARN	89	74.913	ENSATEG00000004661	parn	82	74.394	Anabas_testudineus
ENSFALG00000003911	PARN	98	94.453	ENSAPLG00000013914	PARN	99	94.453	Anas_platyrhynchos
ENSFALG00000003911	PARN	98	79.938	ENSACAG00000004973	PARN	99	79.782	Anolis_carolinensis
ENSFALG00000003911	PARN	98	82.753	ENSANAG00000031516	PARN	98	88.462	Aotus_nancymaae
ENSFALG00000003911	PARN	90	74.271	ENSACLG00000004742	parn	84	73.756	Astatotilapia_calliptera
ENSFALG00000003911	PARN	98	67.236	ENSAMXG00000012390	parn	99	65.961	Astyanax_mexicanus
ENSFALG00000003911	PARN	98	80.190	ENSBTAG00000018097	PARN	100	82.496	Bos_taurus
ENSFALG00000003911	PARN	98	83.386	ENSCJAG00000015866	PARN	98	88.462	Callithrix_jacchus
ENSFALG00000003911	PARN	98	82.092	ENSCAFG00000018795	PARN	99	82.092	Canis_familiaris
ENSFALG00000003911	PARN	98	82.092	ENSCAFG00020024126	PARN	99	82.092	Canis_lupus_dingo
ENSFALG00000003911	PARN	98	82.726	ENSCHIG00000018143	PARN	99	82.726	Capra_hircus
ENSFALG00000003911	PARN	73	59.875	ENSCAPG00000007984	PARN	78	59.420	Cavia_aperea
ENSFALG00000003911	PARN	98	81.458	ENSCPOG00000002263	PARN	99	81.458	Cavia_porcellus
ENSFALG00000003911	PARN	98	82.911	ENSCCAG00000030367	PARN	98	88.462	Cebus_capucinus
ENSFALG00000003911	PARN	90	90.535	ENSCATG00000041368	PARN	98	93.462	Cercocebus_atys
ENSFALG00000003911	PARN	98	82.409	ENSCLAG00000015406	PARN	99	82.409	Chinchilla_lanigera
ENSFALG00000003911	PARN	98	83.861	ENSCSAG00000008142	PARN	99	83.861	Chlorocebus_sabaeus
ENSFALG00000003911	PARN	98	67.195	ENSCHOG00000007014	PARN	100	67.195	Choloepus_hoffmanni
ENSFALG00000003911	PARN	87	90.196	ENSCPBG00000006609	PARN	97	90.335	Chrysemys_picta_bellii
ENSFALG00000003911	PARN	78	43.977	ENSCING00000010142	-	98	43.678	Ciona_intestinalis
ENSFALG00000003911	PARN	98	72.784	ENSCANG00000028849	-	98	88.462	Colobus_angolensis_palliatus
ENSFALG00000003911	PARN	98	78.639	ENSCGRG00001012096	Parn	99	78.639	Cricetulus_griseus_chok1gshd
ENSFALG00000003911	PARN	98	78.639	ENSCGRG00000004939	Parn	99	78.639	Cricetulus_griseus_crigri
ENSFALG00000003911	PARN	98	67.033	ENSCSEG00000002064	parn	96	63.084	Cynoglossus_semilaevis
ENSFALG00000003911	PARN	98	64.540	ENSCVAG00000014848	parn	83	71.331	Cyprinodon_variegatus
ENSFALG00000003911	PARN	82	73.764	ENSDARG00000102634	parn	96	59.259	Danio_rerio
ENSFALG00000003911	PARN	98	83.518	ENSDNOG00000000833	PARN	97	87.978	Dasypus_novemcinctus
ENSFALG00000003911	PARN	64	83.594	ENSETEG00000014828	-	68	83.594	Echinops_telfairi
ENSFALG00000003911	PARN	54	52.394	ENSEBUG00000007052	PARN	70	71.429	Eptatretus_burgeri
ENSFALG00000003911	PARN	98	82.567	ENSEASG00005011400	PARN	99	82.567	Equus_asinus_asinus
ENSFALG00000003911	PARN	98	82.250	ENSECAG00000017792	PARN	99	82.250	Equus_caballus
ENSFALG00000003911	PARN	84	73.934	ENSEEUG00000010370	PARN	85	73.934	Erinaceus_europaeus
ENSFALG00000003911	PARN	90	71.945	ENSELUG00000013139	parn	76	71.773	Esox_lucius
ENSFALG00000003911	PARN	98	82.884	ENSFCAG00000044961	PARN	98	86.538	Felis_catus
ENSFALG00000003911	PARN	98	81.616	ENSFDAG00000009234	PARN	99	81.616	Fukomys_damarensis
ENSFALG00000003911	PARN	94	65.410	ENSFHEG00000013738	parn	81	80.769	Fundulus_heteroclitus
ENSFALG00000003911	PARN	82	76.850	ENSGMOG00000003231	parn	96	76.660	Gadus_morhua
ENSFALG00000003911	PARN	98	92.393	ENSGALG00000003091	PARN	99	92.393	Gallus_gallus
ENSFALG00000003911	PARN	98	64.012	ENSGAFG00000011061	parn	84	72.279	Gambusia_affinis
ENSFALG00000003911	PARN	98	67.762	ENSGACG00000019501	parn	99	67.344	Gasterosteus_aculeatus
ENSFALG00000003911	PARN	55	83.286	ENSGAGG00000023281	PARN	90	84.136	Gopherus_agassizii
ENSFALG00000003911	PARN	95	84.691	ENSGGOG00000025224	PARN	98	88.462	Gorilla_gorilla
ENSFALG00000003911	PARN	90	74.271	ENSHBUG00000017906	parn	93	74.014	Haplochromis_burtoni
ENSFALG00000003911	PARN	98	81.616	ENSHGLG00000010886	PARN	99	81.616	Heterocephalus_glaber_female
ENSFALG00000003911	PARN	98	81.616	ENSHGLG00100014659	PARN	99	81.616	Heterocephalus_glaber_male
ENSFALG00000003911	PARN	86	70.213	ENSHCOG00000008683	parn	97	69.858	Hippocampus_comes
ENSFALG00000003911	PARN	89	62.937	ENSIPUG00000012401	parn	84	62.937	Ictalurus_punctatus
ENSFALG00000003911	PARN	98	81.775	ENSSTOG00000007519	PARN	99	81.775	Ictidomys_tridecemlineatus
ENSFALG00000003911	PARN	98	79.715	ENSJJAG00000023049	Parn	99	79.715	Jaculus_jaculus
ENSFALG00000003911	PARN	89	74.048	ENSKMAG00000009462	parn	82	73.529	Kryptolebias_marmoratus
ENSFALG00000003911	PARN	89	72.837	ENSLBEG00000009167	parn	88	72.491	Labrus_bergylta
ENSFALG00000003911	PARN	78	79.125	ENSLACG00000004207	PARN	98	77.698	Latimeria_chalumnae
ENSFALG00000003911	PARN	90	78.141	ENSLOCG00000000715	parn	84	77.969	Lepisosteus_oculatus
ENSFALG00000003911	PARN	98	82.567	ENSLAFG00000015036	PARN	99	82.567	Loxodonta_africana
ENSFALG00000003911	PARN	98	79.305	ENSMFAG00000044852	PARN	98	88.462	Macaca_fascicularis
ENSFALG00000003911	PARN	98	83.861	ENSMMUG00000018849	PARN	98	88.462	Macaca_mulatta
ENSFALG00000003911	PARN	98	83.861	ENSMNEG00000045108	PARN	98	88.462	Macaca_nemestrina
ENSFALG00000003911	PARN	98	83.703	ENSMLEG00000031743	PARN	98	88.462	Mandrillus_leucophaeus
ENSFALG00000003911	PARN	89	73.322	ENSMAMG00000006939	parn	83	72.806	Mastacembelus_armatus
ENSFALG00000003911	PARN	90	74.271	ENSMZEG00005013590	parn	94	74.067	Maylandia_zebra
ENSFALG00000003911	PARN	95	91.857	ENSMGAG00000001004	PARN	96	91.857	Meleagris_gallopavo
ENSFALG00000003911	PARN	98	73.594	ENSMAUG00000008025	Parn	99	73.594	Mesocricetus_auratus
ENSFALG00000003911	PARN	98	83.677	ENSMICG00000016053	PARN	98	86.538	Microcebus_murinus
ENSFALG00000003911	PARN	76	85.421	ENSMOCG00000022211	Parn	99	85.421	Microtus_ochrogaster
ENSFALG00000003911	PARN	81	75.568	ENSMMOG00000011333	parn	86	75.568	Mola_mola
ENSFALG00000003911	PARN	76	91.002	ENSMODG00000004915	PARN	98	91.002	Monodelphis_domestica
ENSFALG00000003911	PARN	85	75.769	ENSMALG00000019426	parn	93	75.226	Monopterus_albus
ENSFALG00000003911	PARN	98	79.398	MGP_CAROLIEiJ_G0020466	Parn	99	79.398	Mus_caroli
ENSFALG00000003911	PARN	50	30.247	ENSMUSG00000073460	Pnldc1	66	36.496	Mus_musculus
ENSFALG00000003911	PARN	98	78.922	ENSMUSG00000022685	Parn	99	78.922	Mus_musculus
ENSFALG00000003911	PARN	98	79.239	MGP_PahariEiJ_G0016172	Parn	99	79.239	Mus_pahari
ENSFALG00000003911	PARN	98	78.922	MGP_SPRETEiJ_G0021361	Parn	99	78.922	Mus_spretus
ENSFALG00000003911	PARN	98	81.933	ENSMPUG00000014464	PARN	99	81.933	Mustela_putorius_furo
ENSFALG00000003911	PARN	75	87.474	ENSMLUG00000005414	PARN	99	87.474	Myotis_lucifugus
ENSFALG00000003911	PARN	86	74.054	ENSNBRG00000006805	parn	93	73.874	Neolamprologus_brichardi
ENSFALG00000003911	PARN	98	83.386	ENSNLEG00000010241	PARN	98	88.462	Nomascus_leucogenys
ENSFALG00000003911	PARN	98	59.588	ENSMEUG00000008178	-	100	59.588	Notamacropus_eugenii
ENSFALG00000003911	PARN	98	77.338	ENSOPRG00000012187	PARN	100	77.338	Ochotona_princeps
ENSFALG00000003911	PARN	98	74.606	ENSODEG00000001617	PARN	99	74.606	Octodon_degus
ENSFALG00000003911	PARN	98	69.457	ENSONIG00000000151	parn	99	68.992	Oreochromis_niloticus
ENSFALG00000003911	PARN	59	85.263	ENSOANG00000020155	-	97	85.526	Ornithorhynchus_anatinus
ENSFALG00000003911	PARN	98	82.567	ENSOCUG00000000322	PARN	99	82.567	Oryctolagus_cuniculus
ENSFALG00000003911	PARN	93	71.119	ENSORLG00020010313	parn	87	71.070	Oryzias_latipes_hni
ENSFALG00000003911	PARN	93	70.618	ENSORLG00015000300	parn	87	70.569	Oryzias_latipes_hsok
ENSFALG00000003911	PARN	93	71.070	ENSOMEG00000019555	parn	94	66.822	Oryzias_melastigma
ENSFALG00000003911	PARN	75	86.885	ENSOGAG00000014626	PARN	99	86.885	Otolemur_garnettii
ENSFALG00000003911	PARN	75	89.733	ENSOARG00000007574	PARN	99	89.733	Ovis_aries
ENSFALG00000003911	PARN	98	83.703	ENSPPAG00000031438	PARN	98	88.462	Pan_paniscus
ENSFALG00000003911	PARN	98	82.726	ENSPPRG00000018583	PARN	98	86.538	Panthera_pardus
ENSFALG00000003911	PARN	98	82.726	ENSPTIG00000012135	PARN	98	86.538	Panthera_tigris_altaica
ENSFALG00000003911	PARN	98	83.386	ENSPTRG00000007792	PARN	98	88.462	Pan_troglodytes
ENSFALG00000003911	PARN	98	80.854	ENSPANG00000020099	PARN	98	88.462	Papio_anubis
ENSFALG00000003911	PARN	90	75.993	ENSPKIG00000022807	parn	91	71.066	Paramormyrops_kingsleyae
ENSFALG00000003911	PARN	95	88.455	ENSPSIG00000014804	PARN	100	87.002	Pelodiscus_sinensis
ENSFALG00000003911	PARN	79	76.023	ENSPMGG00000014431	parn	79	71.053	Periophthalmus_magnuspinnatus
ENSFALG00000003911	PARN	98	76.704	ENSPEMG00000018439	Parn	99	76.070	Peromyscus_maniculatus_bairdii
ENSFALG00000003911	PARN	79	67.121	ENSPMAG00000003956	parn	97	67.121	Petromyzon_marinus
ENSFALG00000003911	PARN	64	82.933	ENSPCIG00000001259	PARN	90	82.692	Phascolarctos_cinereus
ENSFALG00000003911	PARN	98	64.106	ENSPFOG00000012823	parn	83	72.184	Poecilia_formosa
ENSFALG00000003911	PARN	98	64.254	ENSPLAG00000006395	parn	83	72.355	Poecilia_latipinna
ENSFALG00000003911	PARN	98	64.254	ENSPMEG00000007711	parn	83	72.355	Poecilia_mexicana
ENSFALG00000003911	PARN	98	64.106	ENSPREG00000000147	parn	83	72.184	Poecilia_reticulata
ENSFALG00000003911	PARN	98	83.281	ENSPPYG00000007123	PARN	99	83.281	Pongo_abelii
ENSFALG00000003911	PARN	94	73.388	ENSPCAG00000001741	PARN	100	73.388	Procavia_capensis
ENSFALG00000003911	PARN	98	80.983	ENSPCOG00000019292	PARN	98	86.538	Propithecus_coquereli
ENSFALG00000003911	PARN	98	78.922	ENSPVAG00000002547	PARN	100	78.922	Pteropus_vampyrus
ENSFALG00000003911	PARN	90	74.271	ENSPNYG00000006835	parn	94	70.745	Pundamilia_nyererei
ENSFALG00000003911	PARN	92	64.904	ENSPNAG00000018905	parn	100	64.583	Pygocentrus_nattereri
ENSFALG00000003911	PARN	98	77.538	ENSRNOG00000002912	Parn	98	82.828	Rattus_norvegicus
ENSFALG00000003911	PARN	50	30.247	ENSRNOG00000023140	Pnldc1	52	30.120	Rattus_norvegicus
ENSFALG00000003911	PARN	52	79.880	ENSRBIG00000018726	PARN	100	79.880	Rhinopithecus_bieti
ENSFALG00000003911	PARN	52	79.880	ENSRROG00000011162	-	100	79.880	Rhinopithecus_roxellana
ENSFALG00000003911	PARN	98	81.171	ENSSBOG00000034726	PARN	98	88.462	Saimiri_boliviensis_boliviensis
ENSFALG00000003911	PARN	65	89.663	ENSSHAG00000008493	PARN	93	89.663	Sarcophilus_harrisii
ENSFALG00000003911	PARN	98	72.611	ENSSFOG00015014165	parn	92	73.913	Scleropages_formosus
ENSFALG00000003911	PARN	89	71.157	ENSSMAG00000000685	parn	91	67.788	Scophthalmus_maximus
ENSFALG00000003911	PARN	89	73.356	ENSSDUG00000014555	parn	82	72.837	Seriola_dumerili
ENSFALG00000003911	PARN	90	72.414	ENSSARG00000014339	PARN	100	72.414	Sorex_araneus
ENSFALG00000003911	PARN	98	89.540	ENSSPUG00000007719	PARN	99	89.540	Sphenodon_punctatus
ENSFALG00000003911	PARN	90	73.883	ENSSPAG00000007095	parn	89	71.661	Stegastes_partitus
ENSFALG00000003911	PARN	98	81.775	ENSSSCG00000007878	PARN	88	81.775	Sus_scrofa
ENSFALG00000003911	PARN	98	97.464	ENSTGUG00000004971	PARN	99	97.464	Taeniopygia_guttata
ENSFALG00000003911	PARN	98	68.545	ENSTNIG00000008252	parn	99	69.146	Tetraodon_nigroviridis
ENSFALG00000003911	PARN	90	70.294	ENSTBEG00000010407	PARN	100	70.294	Tupaia_belangeri
ENSFALG00000003911	PARN	98	78.130	ENSTTRG00000002843	PARN	100	78.130	Tursiops_truncatus
ENSFALG00000003911	PARN	72	74.464	ENSUAMG00000008283	PARN	95	74.464	Ursus_americanus
ENSFALG00000003911	PARN	98	82.409	ENSUMAG00000004527	PARN	99	82.409	Ursus_maritimus
ENSFALG00000003911	PARN	93	81.773	ENSVPAG00000008968	PARN	97	81.910	Vicugna_pacos
ENSFALG00000003911	PARN	98	82.409	ENSVVUG00000019509	PARN	99	82.409	Vulpes_vulpes
ENSFALG00000003911	PARN	98	77.021	ENSXETG00000010994	parn	98	83.977	Xenopus_tropicalis
ENSFALG00000003911	PARN	81	72.830	ENSXCOG00000015990	parn	96	68.143	Xiphophorus_couchianus
ENSFALG00000003911	PARN	90	71.525	ENSXMAG00000014783	parn	84	71.525	Xiphophorus_maculatus