EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFALG00000003949 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 33003 bases
Position: chrJH603372.1:754361-787363
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000004116	KH_1	PF00013.29	4.6e-56	1	3
ENSFALP00000004116	KH_1	PF00013.29	4.6e-56	2	3
ENSFALP00000004116	KH_1	PF00013.29	4.6e-56	3	3
ENSFALP00000004116	KH_2	PF07650.17	1.6e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000004135	-	1189	-	ENSFALP00000004116	318 (aa)	-	U3JMW2

Gene Model

Click here to download ENSFALG00000003949's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000003949's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFALG00000003949	-	98	34.307	ENSFALG00000009615	IGF2BP3	70	34.307
ENSFALG00000003949	-	97	79.213	ENSFALG00000004411	-	75	79.213
ENSFALG00000003949	-	93	42.254	ENSFALG00000005703	NOVA1	54	42.254
ENSFALG00000003949	-	78	52.857	ENSFALG00000012478	HNRNPK	57	52.857
ENSFALG00000003949	-	97	72.206	ENSFALG00000002980	PCBP2	100	72.206
ENSFALG00000003949	-	94	35.821	ENSFALG00000013346	IGF2BP2	70	35.821
ENSFALG00000003949	-	65	40.625	ENSFALG00000005768	FUBP1	55	40.625
ENSFALG00000003949	-	94	66.000	ENSFALG00000008831	PCBP4	72	66.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000003949	-	98	91.374	ENSAPOG00000020003	pcbp3	87	91.374	Acanthochromis_polyacanthus
ENSFALG00000003949	-	95	97.039	ENSAPOG00000016582	-	98	92.790	Acanthochromis_polyacanthus
ENSFALG00000003949	-	100	92.604	ENSAMEG00000001697	-	100	88.920	Ailuropoda_melanoleuca
ENSFALG00000003949	-	98	91.900	ENSACIG00000002739	-	98	91.900	Amphilophus_citrinellus
ENSFALG00000003949	-	95	86.239	ENSACIG00000010933	pcbp3	93	86.239	Amphilophus_citrinellus
ENSFALG00000003949	-	95	96.040	ENSAOCG00000008592	-	96	96.040	Amphiprion_ocellaris
ENSFALG00000003949	-	96	92.466	ENSAOCG00000007806	-	100	92.466	Amphiprion_ocellaris
ENSFALG00000003949	-	98	94.904	ENSAPEG00000005209	-	98	94.904	Amphiprion_percula
ENSFALG00000003949	-	95	88.450	ENSAPEG00000008011	pcbp3	93	88.450	Amphiprion_percula
ENSFALG00000003949	-	95	86.810	ENSATEG00000015787	-	98	86.810	Anabas_testudineus
ENSFALG00000003949	-	98	94.268	ENSATEG00000009833	-	98	94.268	Anabas_testudineus
ENSFALG00000003949	-	97	79.213	ENSAPLG00000008951	-	80	79.213	Anas_platyrhynchos
ENSFALG00000003949	-	100	95.195	ENSAPLG00000002975	-	100	95.195	Anas_platyrhynchos
ENSFALG00000003949	-	100	87.293	ENSACAG00000004607	-	100	87.293	Anolis_carolinensis
ENSFALG00000003949	-	99	85.588	ENSACAG00000009819	-	99	85.588	Anolis_carolinensis
ENSFALG00000003949	-	96	97.479	ENSANAG00000030702	-	100	97.479	Aotus_nancymaae
ENSFALG00000003949	-	98	96.178	ENSACLG00000003801	-	98	96.178	Astatotilapia_calliptera
ENSFALG00000003949	-	95	88.146	ENSACLG00000011835	pcbp3	93	88.146	Astatotilapia_calliptera
ENSFALG00000003949	-	97	67.353	ENSAMXG00000001760	zgc:110045	73	67.353	Astyanax_mexicanus
ENSFALG00000003949	-	95	90.214	ENSAMXG00000003440	pcbp3	93	90.214	Astyanax_mexicanus
ENSFALG00000003949	-	95	92.384	ENSAMXG00000013588	-	98	92.384	Astyanax_mexicanus
ENSFALG00000003949	-	92	97.863	ENSCAFG00020019472	-	83	97.863	Canis_lupus_dingo
ENSFALG00000003949	-	100	97.806	ENSCSAG00000007440	-	91	97.806	Chlorocebus_sabaeus
ENSFALG00000003949	-	97	99.353	ENSCPBG00000012151	-	100	93.215	Chrysemys_picta_bellii
ENSFALG00000003949	-	97	85.455	ENSCPBG00000000733	-	73	85.455	Chrysemys_picta_bellii
ENSFALG00000003949	-	95	92.079	ENSCSEG00000000822	pcbp3	97	92.079	Cynoglossus_semilaevis
ENSFALG00000003949	-	98	77.485	ENSCSEG00000016984	-	98	77.485	Cynoglossus_semilaevis
ENSFALG00000003949	-	95	88.720	ENSCVAG00000014482	pcbp3	93	88.720	Cyprinodon_variegatus
ENSFALG00000003949	-	99	96.226	ENSCVAG00000005262	-	99	96.226	Cyprinodon_variegatus
ENSFALG00000003949	-	93	96.875	ENSDARG00000054378	pcbp3	99	90.323	Danio_rerio
ENSFALG00000003949	-	100	84.326	ENSETEG00000015988	-	100	84.326	Echinops_telfairi
ENSFALG00000003949	-	92	71.429	ENSEBUG00000005495	pcbp3	73	71.429	Eptatretus_burgeri
ENSFALG00000003949	-	96	74.910	ENSEBUG00000016192	pcbp3	99	75.373	Eptatretus_burgeri
ENSFALG00000003949	-	98	82.278	ENSEBUG00000007485	-	92	83.105	Eptatretus_burgeri
ENSFALG00000003949	-	95	97.030	ENSELUG00000001560	-	84	97.030	Esox_lucius
ENSFALG00000003949	-	95	89.297	ENSELUG00000003521	pcbp3	93	89.297	Esox_lucius
ENSFALG00000003949	-	96	93.443	ENSFHEG00000016615	pcbp3	94	93.443	Fundulus_heteroclitus
ENSFALG00000003949	-	99	94.025	ENSFHEG00000006539	-	99	94.025	Fundulus_heteroclitus
ENSFALG00000003949	-	95	69.325	ENSGMOG00000008611	-	98	69.325	Gadus_morhua
ENSFALG00000003949	-	95	80.122	ENSGMOG00000011992	pcbp3	95	80.122	Gadus_morhua
ENSFALG00000003949	-	100	85.873	ENSGALG00000004394	-	98	92.935	Gallus_gallus
ENSFALG00000003949	-	98	84.661	ENSGALG00000013155	-	99	83.133	Gallus_gallus
ENSFALG00000003949	-	95	96.711	ENSGAFG00000010274	-	93	96.711	Gambusia_affinis
ENSFALG00000003949	-	97	84.290	ENSGAFG00000011430	pcbp3	95	84.290	Gambusia_affinis
ENSFALG00000003949	-	98	89.254	ENSGACG00000002266	-	98	89.254	Gasterosteus_aculeatus
ENSFALG00000003949	-	97	79.545	ENSGACG00000014955	-	97	79.545	Gasterosteus_aculeatus
ENSFALG00000003949	-	92	92.105	ENSGAGG00000000271	-	100	92.105	Gopherus_agassizii
ENSFALG00000003949	-	80	89.744	ENSGAGG00000006956	-	78	89.744	Gopherus_agassizii
ENSFALG00000003949	-	98	96.178	ENSHBUG00000021782	-	98	96.178	Haplochromis_burtoni
ENSFALG00000003949	-	95	93.377	ENSHBUG00000010697	pcbp3	96	93.377	Haplochromis_burtoni
ENSFALG00000003949	-	98	92.652	ENSHCOG00000006067	-	98	92.652	Hippocampus_comes
ENSFALG00000003949	-	95	88.991	ENSHCOG00000017868	pcbp3	93	88.991	Hippocampus_comes
ENSFALG00000003949	-	99	94.340	ENSIPUG00000006238	pcbp3	99	94.340	Ictalurus_punctatus
ENSFALG00000003949	-	95	88.450	ENSKMAG00000003046	pcbp3	93	88.450	Kryptolebias_marmoratus
ENSFALG00000003949	-	95	96.053	ENSKMAG00000018530	-	93	96.053	Kryptolebias_marmoratus
ENSFALG00000003949	-	98	79.937	ENSLBEG00000006542	-	98	79.937	Labrus_bergylta
ENSFALG00000003949	-	97	91.961	ENSLBEG00000006201	pcbp3	96	91.961	Labrus_bergylta
ENSFALG00000003949	-	97	85.352	ENSLACG00000010386	pcbp3	75	85.352	Latimeria_chalumnae
ENSFALG00000003949	-	97	79.320	ENSLACG00000010804	zgc:110045	74	79.320	Latimeria_chalumnae
ENSFALG00000003949	-	100	91.150	ENSLOCG00000009369	pcbp3	100	91.150	Lepisosteus_oculatus
ENSFALG00000003949	-	97	84.545	ENSLOCG00000005058	zgc:110045	81	84.545	Lepisosteus_oculatus
ENSFALG00000003949	-	98	93.949	ENSMAMG00000011620	-	98	93.949	Mastacembelus_armatus
ENSFALG00000003949	-	95	93.709	ENSMAMG00000022336	pcbp3	91	93.709	Mastacembelus_armatus
ENSFALG00000003949	-	95	86.667	ENSMZEG00005014882	-	98	82.216	Maylandia_zebra
ENSFALG00000003949	-	93	88.601	ENSMZEG00005008993	pcbp3	96	86.196	Maylandia_zebra
ENSFALG00000003949	-	97	79.494	ENSMGAG00000006794	-	75	79.494	Meleagris_gallopavo
ENSFALG00000003949	-	97	83.429	ENSMGAG00000001883	-	97	83.714	Meleagris_gallopavo
ENSFALG00000003949	-	98	93.631	ENSMMOG00000005216	-	98	93.631	Mola_mola
ENSFALG00000003949	-	95	92.763	ENSMMOG00000000730	pcbp3	86	92.763	Mola_mola
ENSFALG00000003949	-	71	78.972	ENSMODG00000027884	-	93	78.972	Monodelphis_domestica
ENSFALG00000003949	-	95	86.503	ENSMALG00000000691	pcbp3	98	83.819	Monopterus_albus
ENSFALG00000003949	-	100	86.391	ENSMPUG00000001779	-	92	86.391	Mustela_putorius_furo
ENSFALG00000003949	-	99	84.731	ENSNBRG00000016714	-	100	84.731	Neolamprologus_brichardi
ENSFALG00000003949	-	95	86.503	ENSNBRG00000016409	-	93	86.503	Neolamprologus_brichardi
ENSFALG00000003949	-	96	83.668	ENSOPRG00000003431	-	100	83.668	Ochotona_princeps
ENSFALG00000003949	-	95	84.058	ENSONIG00000012122	-	96	84.058	Oreochromis_niloticus
ENSFALG00000003949	-	98	96.178	ENSONIG00000004611	-	98	96.178	Oreochromis_niloticus
ENSFALG00000003949	-	100	98.113	ENSOCUG00000002696	-	91	98.113	Oryctolagus_cuniculus
ENSFALG00000003949	-	95	96.040	ENSORLG00000000059	pcbp3	98	96.040	Oryzias_latipes
ENSFALG00000003949	-	98	96.497	ENSORLG00000022739	-	98	96.497	Oryzias_latipes
ENSFALG00000003949	-	98	96.178	ENSORLG00020006124	-	98	96.178	Oryzias_latipes_hni
ENSFALG00000003949	-	98	94.551	ENSORLG00020012671	pcbp3	97	94.551	Oryzias_latipes_hni
ENSFALG00000003949	-	98	94.551	ENSORLG00015000429	pcbp3	97	94.551	Oryzias_latipes_hsok
ENSFALG00000003949	-	97	95.498	ENSORLG00015008051	-	95	95.498	Oryzias_latipes_hsok
ENSFALG00000003949	-	95	92.759	ENSOMEG00000020811	pcbp3	99	92.759	Oryzias_melastigma
ENSFALG00000003949	-	98	96.178	ENSOMEG00000020162	-	98	96.178	Oryzias_melastigma
ENSFALG00000003949	-	100	85.714	ENSOGAG00000008044	-	100	85.714	Otolemur_garnettii
ENSFALG00000003949	-	95	98.020	ENSPKIG00000019329	pcbp3	98	94.904	Paramormyrops_kingsleyae
ENSFALG00000003949	-	81	84.103	ENSPKIG00000020913	-	84	84.103	Paramormyrops_kingsleyae
ENSFALG00000003949	-	92	83.673	ENSPSIG00000008350	-	68	83.673	Pelodiscus_sinensis
ENSFALG00000003949	-	100	84.821	ENSPSIG00000014970	-	100	85.417	Pelodiscus_sinensis
ENSFALG00000003949	-	95	88.923	ENSPMGG00000022383	pcbp3	93	88.923	Periophthalmus_magnuspinnatus
ENSFALG00000003949	-	98	74.684	ENSPMAG00000004551	pcbp3	91	74.684	Petromyzon_marinus
ENSFALG00000003949	-	80	89.119	ENSPMAG00000004637	-	100	89.119	Petromyzon_marinus
ENSFALG00000003949	-	100	92.105	ENSPCIG00000028092	-	99	93.694	Phascolarctos_cinereus
ENSFALG00000003949	-	98	90.798	ENSPLAG00000004074	-	91	90.798	Poecilia_latipinna
ENSFALG00000003949	-	98	78.933	ENSPLAG00000011449	pcbp3	89	78.933	Poecilia_latipinna
ENSFALG00000003949	-	100	86.628	ENSPMEG00000006653	-	100	86.919	Poecilia_mexicana
ENSFALG00000003949	-	95	88.146	ENSPMEG00000021239	pcbp3	93	88.146	Poecilia_mexicana
ENSFALG00000003949	-	98	94.268	ENSPREG00000020585	-	98	94.268	Poecilia_reticulata
ENSFALG00000003949	-	95	91.148	ENSPREG00000015736	pcbp3	97	91.148	Poecilia_reticulata
ENSFALG00000003949	-	95	93.069	ENSPNYG00000012326	pcbp3	93	93.069	Pundamilia_nyererei
ENSFALG00000003949	-	98	93.631	ENSPNYG00000013205	-	98	93.631	Pundamilia_nyererei
ENSFALG00000003949	-	94	92.359	ENSPNAG00000008541	-	96	92.359	Pygocentrus_nattereri
ENSFALG00000003949	-	99	96.541	ENSPNAG00000015104	pcbp3	99	96.541	Pygocentrus_nattereri
ENSFALG00000003949	-	100	98.119	ENSRNOG00000001245	Pcbp3	100	98.119	Rattus_norvegicus
ENSFALG00000003949	-	100	87.009	ENSRBIG00000028177	-	92	87.009	Rhinopithecus_bieti
ENSFALG00000003949	-	100	93.195	ENSSHAG00000007890	-	100	93.195	Sarcophilus_harrisii
ENSFALG00000003949	-	95	89.264	ENSSFOG00015014706	pcbp3	93	89.264	Scleropages_formosus
ENSFALG00000003949	-	99	83.912	ENSSFOG00015007118	-	97	83.912	Scleropages_formosus
ENSFALG00000003949	-	95	97.690	ENSSFOG00015010205	pcbp3	93	97.690	Scleropages_formosus
ENSFALG00000003949	-	95	93.399	ENSSMAG00000011929	pcbp3	95	93.399	Scophthalmus_maximus
ENSFALG00000003949	-	98	96.497	ENSSMAG00000003135	-	98	96.497	Scophthalmus_maximus
ENSFALG00000003949	-	95	86.544	ENSSDUG00000011608	pcbp3	97	86.544	Seriola_dumerili
ENSFALG00000003949	-	95	90.554	ENSSDUG00000008502	-	98	85.855	Seriola_dumerili
ENSFALG00000003949	-	95	86.544	ENSSLDG00000008518	pcbp3	97	86.544	Seriola_lalandi_dorsalis
ENSFALG00000003949	-	95	97.039	ENSSLDG00000020161	-	93	97.039	Seriola_lalandi_dorsalis
ENSFALG00000003949	-	92	84.375	ENSSPUG00000013214	-	92	85.854	Sphenodon_punctatus
ENSFALG00000003949	-	95	75.229	ENSSPAG00000023341	-	93	75.229	Stegastes_partitus
ENSFALG00000003949	-	96	92.808	ENSSPAG00000004190	-	100	92.808	Stegastes_partitus
ENSFALG00000003949	-	100	90.265	ENSTGUG00000003316	-	100	90.265	Taeniopygia_guttata
ENSFALG00000003949	-	99	91.195	ENSTGUG00000008158	-	100	91.195	Taeniopygia_guttata
ENSFALG00000003949	-	96	96.181	ENSTRUG00000006280	-	92	96.181	Takifugu_rubripes
ENSFALG00000003949	-	92	96.809	ENSTRUG00000013604	pcbp3	93	89.905	Takifugu_rubripes
ENSFALG00000003949	-	100	85.873	ENSTTRG00000015075	-	100	85.873	Tursiops_truncatus
ENSFALG00000003949	-	91	78.402	ENSXETG00000010491	pcbp2	74	78.402	Xenopus_tropicalis
ENSFALG00000003949	-	100	90.265	ENSXETG00000011483	pcbp1	100	90.265	Xenopus_tropicalis
ENSFALG00000003949	-	95	88.146	ENSXCOG00000020481	pcbp3	93	88.146	Xiphophorus_couchianus
ENSFALG00000003949	-	95	88.450	ENSXMAG00000008175	pcbp3	93	88.450	Xiphophorus_maculatus
ENSFALG00000003949	-	95	97.039	ENSXMAG00000028711	-	93	97.039	Xiphophorus_maculatus