EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFALG00000003981 (Gene tree)
Gene ID: -
Gene Symbol: SMARCAL1
Alias: HARP|HHARP
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 35225 bases
Position: chrJH603264.1:858826-894050
Accession: 101812834
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000004145	ResIII	PF04851.15	1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000004166	SMARCAL1-201	3969	XM_005049445	ENSFALP00000004145	964 (aa)	XP_005049502	U3JMZ1

Gene Model

Click here to download ENSFALG00000003981's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000003981's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000003981	SMARCAL1	99	54.158	ENSG00000138375	SMARCAL1	99	68.750	Homo_sapiens
ENSFALG00000003981	SMARCAL1	71	64.971	ENSAPOG00000020156	SMARCAL1	96	53.690	Acanthochromis_polyacanthus
ENSFALG00000003981	SMARCAL1	71	63.989	ENSACIG00000001500	smarcal1	89	63.989	Amphilophus_citrinellus
ENSFALG00000003981	SMARCAL1	71	65.698	ENSAOCG00000014266	SMARCAL1	76	65.698	Amphiprion_ocellaris
ENSFALG00000003981	SMARCAL1	71	65.698	ENSAPEG00000015861	SMARCAL1	75	65.698	Amphiprion_percula
ENSFALG00000003981	SMARCAL1	97	53.022	ENSATEG00000020624	SMARCAL1	97	53.022	Anabas_testudineus
ENSFALG00000003981	SMARCAL1	99	81.198	ENSAPLG00000009864	SMARCAL1	99	81.198	Anas_platyrhynchos
ENSFALG00000003981	SMARCAL1	99	59.960	ENSACAG00000004612	SMARCAL1	99	59.940	Anolis_carolinensis
ENSFALG00000003981	SMARCAL1	71	64.971	ENSACLG00000015990	SMARCAL1	80	63.296	Astatotilapia_calliptera
ENSFALG00000003981	SMARCAL1	75	62.724	ENSAMXG00000003350	smarcal1	99	52.588	Astyanax_mexicanus
ENSFALG00000003981	SMARCAL1	97	75.772	ENSCPBG00000013599	SMARCAL1	99	75.772	Chrysemys_picta_bellii
ENSFALG00000003981	SMARCAL1	68	48.200	ENSCING00000009308	-	100	48.200	Ciona_intestinalis
ENSFALG00000003981	SMARCAL1	96	51.761	ENSCSEG00000010785	SMARCAL1	98	51.170	Cynoglossus_semilaevis
ENSFALG00000003981	SMARCAL1	71	64.680	ENSCVAG00000018780	SMARCAL1	77	64.680	Cyprinodon_variegatus
ENSFALG00000003981	SMARCAL1	54	55.641	ENSEBUG00000011906	SMARCAL1	72	55.641	Eptatretus_burgeri
ENSFALG00000003981	SMARCAL1	71	63.028	ENSELUG00000010440	-	66	63.028	Esox_lucius
ENSFALG00000003981	SMARCAL1	82	63.490	ENSFHEG00000008380	SMARCAL1	82	60.982	Fundulus_heteroclitus
ENSFALG00000003981	SMARCAL1	51	62.796	ENSGMOG00000010034	smarcal1	86	62.796	Gadus_morhua
ENSFALG00000003981	SMARCAL1	99	78.099	ENSGALG00000011475	RPL37A	99	78.099	Gallus_gallus
ENSFALG00000003981	SMARCAL1	69	66.187	ENSGACG00000006073	SMARCAL1	100	67.598	Gasterosteus_aculeatus
ENSFALG00000003981	SMARCAL1	93	67.738	ENSGAGG00000015660	SMARCAL1	99	67.846	Gopherus_agassizii
ENSFALG00000003981	SMARCAL1	75	63.260	ENSHBUG00000002973	smarcal1	97	53.765	Haplochromis_burtoni
ENSFALG00000003981	SMARCAL1	74	59.401	ENSHCOG00000017921	smarcal1	87	59.401	Hippocampus_comes
ENSFALG00000003981	SMARCAL1	72	62.572	ENSKMAG00000012023	SMARCAL1	82	61.142	Kryptolebias_marmoratus
ENSFALG00000003981	SMARCAL1	69	61.619	ENSLBEG00000022915	smarcal1	87	61.619	Labrus_bergylta
ENSFALG00000003981	SMARCAL1	91	52.500	ENSLBEG00000003493	smarcal1	99	52.500	Labrus_bergylta
ENSFALG00000003981	SMARCAL1	99	53.557	ENSLACG00000010974	SMARCAL1	99	53.925	Latimeria_chalumnae
ENSFALG00000003981	SMARCAL1	82	67.411	ENSLOCG00000009637	smarcal1	83	82.759	Lepisosteus_oculatus
ENSFALG00000003981	SMARCAL1	75	62.155	ENSMAMG00000000828	SMARCAL1	82	62.155	Mastacembelus_armatus
ENSFALG00000003981	SMARCAL1	71	64.826	ENSMZEG00005007660	SMARCAL1	80	63.158	Maylandia_zebra
ENSFALG00000003981	SMARCAL1	99	76.836	ENSMGAG00000011658	SMARCAL1	99	76.836	Meleagris_gallopavo
ENSFALG00000003981	SMARCAL1	72	58.941	ENSMMOG00000003842	smarcal1	86	58.773	Mola_mola
ENSFALG00000003981	SMARCAL1	99	54.945	ENSMODG00000015544	SMARCAL1	99	54.645	Monodelphis_domestica
ENSFALG00000003981	SMARCAL1	71	63.965	ENSNBRG00000016273	smarcal1	89	63.965	Neolamprologus_brichardi
ENSFALG00000003981	SMARCAL1	93	55.908	ENSMEUG00000004395	SMARCAL1	99	55.700	Notamacropus_eugenii
ENSFALG00000003981	SMARCAL1	71	65.262	ENSONIG00000009036	smarcal1	99	64.809	Oreochromis_niloticus
ENSFALG00000003981	SMARCAL1	72	63.165	ENSORLG00000016455	SMARCAL1	77	63.165	Oryzias_latipes
ENSFALG00000003981	SMARCAL1	74	61.687	ENSORLG00020001610	SMARCAL1	80	61.687	Oryzias_latipes_hni
ENSFALG00000003981	SMARCAL1	74	61.964	ENSORLG00015001865	SMARCAL1	77	63.309	Oryzias_latipes_hsok
ENSFALG00000003981	SMARCAL1	84	54.340	ENSOMEG00000001845	smarcal1	94	54.340	Oryzias_melastigma
ENSFALG00000003981	SMARCAL1	72	61.103	ENSPMGG00000019092	SMARCAL1	90	56.608	Periophthalmus_magnuspinnatus
ENSFALG00000003981	SMARCAL1	99	54.454	ENSPCIG00000022514	SMARCAL1	99	55.411	Phascolarctos_cinereus
ENSFALG00000003981	SMARCAL1	71	64.526	ENSPFOG00000000560	SMARCAL1	96	56.619	Poecilia_formosa
ENSFALG00000003981	SMARCAL1	71	64.672	ENSPMEG00000018146	SMARCAL1	96	56.738	Poecilia_mexicana
ENSFALG00000003981	SMARCAL1	77	62.716	ENSPNAG00000014900	smarcal1	94	62.716	Pygocentrus_nattereri
ENSFALG00000003981	SMARCAL1	99	52.722	ENSSHAG00000013538	SMARCAL1	99	52.984	Sarcophilus_harrisii
ENSFALG00000003981	SMARCAL1	97	51.582	ENSSMAG00000010427	SMARCAL1	96	51.899	Scophthalmus_maximus
ENSFALG00000003981	SMARCAL1	72	63.218	ENSSDUG00000017470	SMARCAL1	94	52.660	Seriola_dumerili
ENSFALG00000003981	SMARCAL1	72	63.218	ENSSLDG00000007224	SMARCAL1	96	52.716	Seriola_lalandi_dorsalis
ENSFALG00000003981	SMARCAL1	99	64.558	ENSSPUG00000015369	SMARCAL1	99	64.357	Sphenodon_punctatus
ENSFALG00000003981	SMARCAL1	68	65.906	ENSSPAG00000003742	smarcal1	84	65.906	Stegastes_partitus
ENSFALG00000003981	SMARCAL1	73	61.777	ENSSSCG00000035501	SMARCAL1	77	61.777	Sus_scrofa
ENSFALG00000003981	SMARCAL1	71	92.353	ENSTGUG00000005079	SMARCAL1	100	92.353	Taeniopygia_guttata
ENSFALG00000003981	SMARCAL1	75	55.299	ENSTRUG00000010701	SMARCAL1	83	55.299	Takifugu_rubripes
ENSFALG00000003981	SMARCAL1	99	48.328	ENSTTRG00000009001	SMARCAL1	99	48.377	Tursiops_truncatus
ENSFALG00000003981	SMARCAL1	99	58.444	ENSXETG00000000465	smarcal1	99	58.444	Xenopus_tropicalis