EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFALG00000004281 (Gene tree)
Gene ID: -
Gene Symbol: SF3B1
Alias: Hsh155|PRPF10|Prp10|SAP155|SF3b155
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 19984 bases
Position: chrJH603193.1:7697746-7717729
Accession: 10768
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000004456	SF3b1	PF08920.10	3.8e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000004480	SF3B1-201	6525	-	ENSFALP00000004456	1304 (aa)	-	U3JNV2

Gene Model

Click here to download ENSFALG00000004281's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000004281's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000004281	SF3B1	99	99.459	ENSG00000115524	SF3B1	99	99.459	Homo_sapiens
ENSFALG00000004281	SF3B1	99	94.014	ENSAPOG00000011894	sf3b1	99	93.874	Acanthochromis_polyacanthus
ENSFALG00000004281	SF3B1	99	99.079	ENSAMEG00000013809	SF3B1	99	99.079	Ailuropoda_melanoleuca
ENSFALG00000004281	SF3B1	99	93.313	ENSACIG00000020910	sf3b1	96	93.313	Amphilophus_citrinellus
ENSFALG00000004281	SF3B1	99	93.874	ENSAOCG00000004478	sf3b1	99	93.874	Amphiprion_ocellaris
ENSFALG00000004281	SF3B1	99	93.874	ENSAPEG00000012937	sf3b1	99	93.874	Amphiprion_percula
ENSFALG00000004281	SF3B1	99	93.932	ENSATEG00000020435	sf3b1	99	93.932	Anabas_testudineus
ENSFALG00000004281	SF3B1	99	99.461	ENSAPLG00000003993	SF3B1	99	99.461	Anas_platyrhynchos
ENSFALG00000004281	SF3B1	99	98.995	ENSACAG00000009612	SF3B1	99	98.995	Anolis_carolinensis
ENSFALG00000004281	SF3B1	99	99.459	ENSANAG00000021577	SF3B1	100	99.827	Aotus_nancymaae
ENSFALG00000004281	SF3B1	99	92.950	ENSACLG00000023470	sf3b1	99	92.950	Astatotilapia_calliptera
ENSFALG00000004281	SF3B1	99	94.028	ENSAMXG00000002219	sf3b1	99	94.028	Astyanax_mexicanus
ENSFALG00000004281	SF3B1	99	99.382	ENSBTAG00000008915	SF3B1	99	99.382	Bos_taurus
ENSFALG00000004281	SF3B1	98	66.616	WBGene00011605	sftb-1	98	66.717	Caenorhabditis_elegans
ENSFALG00000004281	SF3B1	99	99.459	ENSCJAG00000003902	SF3B1	99	99.459	Callithrix_jacchus
ENSFALG00000004281	SF3B1	99	99.459	ENSCAFG00000010826	SF3B1	99	99.459	Canis_familiaris
ENSFALG00000004281	SF3B1	99	99.459	ENSCAFG00020004750	SF3B1	99	99.459	Canis_lupus_dingo
ENSFALG00000004281	SF3B1	99	99.382	ENSCHIG00000015226	SF3B1	99	99.382	Capra_hircus
ENSFALG00000004281	SF3B1	99	99.382	ENSTSYG00000009214	SF3B1	99	99.382	Carlito_syrichta
ENSFALG00000004281	SF3B1	99	99.079	ENSCAPG00000006547	SF3B1	99	99.079	Cavia_aperea
ENSFALG00000004281	SF3B1	99	99.459	ENSCPOG00000009353	SF3B1	100	99.459	Cavia_porcellus
ENSFALG00000004281	SF3B1	99	99.459	ENSCCAG00000020506	SF3B1	99	99.459	Cebus_capucinus
ENSFALG00000004281	SF3B1	99	99.459	ENSCATG00000035735	SF3B1	99	99.459	Cercocebus_atys
ENSFALG00000004281	SF3B1	99	99.080	ENSCLAG00000014767	SF3B1	99	99.080	Chinchilla_lanigera
ENSFALG00000004281	SF3B1	99	99.459	ENSCSAG00000011505	SF3B1	99	99.459	Chlorocebus_sabaeus
ENSFALG00000004281	SF3B1	76	96.429	ENSCHOG00000009860	SF3B1	75	96.429	Choloepus_hoffmanni
ENSFALG00000004281	SF3B1	99	99.458	ENSCPBG00000021902	SF3B1	100	99.576	Chrysemys_picta_bellii
ENSFALG00000004281	SF3B1	68	78.060	ENSCING00000002558	-	100	78.414	Ciona_intestinalis
ENSFALG00000004281	SF3B1	99	80.030	ENSCSAVG00000002559	-	99	79.878	Ciona_savignyi
ENSFALG00000004281	SF3B1	99	99.459	ENSCANG00000029415	SF3B1	100	98.774	Colobus_angolensis_palliatus
ENSFALG00000004281	SF3B1	99	99.459	ENSCGRG00001016990	Sf3b1	99	99.459	Cricetulus_griseus_chok1gshd
ENSFALG00000004281	SF3B1	99	99.459	ENSCGRG00000005301	Sf3b1	99	99.459	Cricetulus_griseus_crigri
ENSFALG00000004281	SF3B1	99	90.238	ENSCSEG00000003860	sf3b1	99	90.238	Cynoglossus_semilaevis
ENSFALG00000004281	SF3B1	95	93.939	ENSCVAG00000003680	sf3b1	99	93.939	Cyprinodon_variegatus
ENSFALG00000004281	SF3B1	99	93.721	ENSDARG00000056138	sf3b1	99	93.721	Danio_rerio
ENSFALG00000004281	SF3B1	99	99.383	ENSDNOG00000011754	SF3B1	99	99.383	Dasypus_novemcinctus
ENSFALG00000004281	SF3B1	99	96.986	ENSDORG00000002399	Sf3b1	100	96.986	Dipodomys_ordii
ENSFALG00000004281	SF3B1	99	76.723	FBgn0031266	Sf3b1	99	76.723	Drosophila_melanogaster
ENSFALG00000004281	SF3B1	82	98.701	ENSETEG00000009188	SF3B1	100	98.701	Echinops_telfairi
ENSFALG00000004281	SF3B1	99	87.634	ENSEBUG00000004325	sf3b1	100	90.261	Eptatretus_burgeri
ENSFALG00000004281	SF3B1	99	99.459	ENSEASG00005020159	SF3B1	97	99.459	Equus_asinus_asinus
ENSFALG00000004281	SF3B1	99	99.459	ENSECAG00000021657	SF3B1	97	99.459	Equus_caballus
ENSFALG00000004281	SF3B1	86	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSFALG00000004281	SF3B1	99	92.700	ENSELUG00000005977	sf3b1	97	92.928	Esox_lucius
ENSFALG00000004281	SF3B1	99	99.459	ENSFCAG00000005038	SF3B1	99	99.459	Felis_catus
ENSFALG00000004281	SF3B1	99	99.459	ENSFDAG00000017510	SF3B1	99	99.459	Fukomys_damarensis
ENSFALG00000004281	SF3B1	99	93.032	ENSFHEG00000014333	sf3b1	99	93.032	Fundulus_heteroclitus
ENSFALG00000004281	SF3B1	99	93.400	ENSGMOG00000006773	sf3b1	99	93.400	Gadus_morhua
ENSFALG00000004281	SF3B1	99	99.923	ENSGALG00000008038	SF3B1	99	99.923	Gallus_gallus
ENSFALG00000004281	SF3B1	98	94.237	ENSGAFG00000000704	sf3b1	99	94.237	Gambusia_affinis
ENSFALG00000004281	SF3B1	99	92.939	ENSGACG00000008839	sf3b1	99	93.400	Gasterosteus_aculeatus
ENSFALG00000004281	SF3B1	99	99.458	ENSGAGG00000017478	SF3B1	99	99.458	Gopherus_agassizii
ENSFALG00000004281	SF3B1	99	92.632	ENSGGOG00000009264	SF3B1	99	93.841	Gorilla_gorilla
ENSFALG00000004281	SF3B1	99	93.016	ENSHBUG00000007705	sf3b1	99	93.016	Haplochromis_burtoni
ENSFALG00000004281	SF3B1	99	99.080	ENSHGLG00000008285	-	99	99.080	Heterocephalus_glaber_female
ENSFALG00000004281	SF3B1	99	97.086	ENSHGLG00100005535	-	99	97.086	Heterocephalus_glaber_male
ENSFALG00000004281	SF3B1	99	92.917	ENSHCOG00000016775	sf3b1	99	92.993	Hippocampus_comes
ENSFALG00000004281	SF3B1	99	94.023	ENSIPUG00000013171	sf3b1	99	94.023	Ictalurus_punctatus
ENSFALG00000004281	SF3B1	99	99.459	ENSSTOG00000011034	SF3B1	99	99.459	Ictidomys_tridecemlineatus
ENSFALG00000004281	SF3B1	99	99.380	ENSJJAG00000010903	Sf3b1	99	99.380	Jaculus_jaculus
ENSFALG00000004281	SF3B1	99	92.972	ENSKMAG00000004009	sf3b1	99	93.048	Kryptolebias_marmoratus
ENSFALG00000004281	SF3B1	99	93.533	ENSLBEG00000022208	sf3b1	99	93.533	Labrus_bergylta
ENSFALG00000004281	SF3B1	99	92.638	ENSLACG00000014832	SF3B1	99	92.638	Latimeria_chalumnae
ENSFALG00000004281	SF3B1	99	94.801	ENSLOCG00000003899	sf3b1	99	94.801	Lepisosteus_oculatus
ENSFALG00000004281	SF3B1	99	99.459	ENSLAFG00000001956	SF3B1	99	99.459	Loxodonta_africana
ENSFALG00000004281	SF3B1	99	99.383	ENSMMUG00000022430	SF3B1	99	99.383	Macaca_mulatta
ENSFALG00000004281	SF3B1	99	99.459	ENSMNEG00000042333	SF3B1	100	99.827	Macaca_nemestrina
ENSFALG00000004281	SF3B1	94	93.258	ENSMLEG00000026141	SF3B1	99	93.548	Mandrillus_leucophaeus
ENSFALG00000004281	SF3B1	99	93.870	ENSMAMG00000010241	sf3b1	99	93.870	Mastacembelus_armatus
ENSFALG00000004281	SF3B1	99	92.950	ENSMZEG00005021254	sf3b1	99	92.950	Maylandia_zebra
ENSFALG00000004281	SF3B1	99	99.151	ENSMGAG00000007017	SF3B1	99	99.151	Meleagris_gallopavo
ENSFALG00000004281	SF3B1	99	94.696	ENSMAUG00000009071	Sf3b1	99	94.850	Mesocricetus_auratus
ENSFALG00000004281	SF3B1	99	99.382	ENSMICG00000013879	SF3B1	99	99.382	Microcebus_murinus
ENSFALG00000004281	SF3B1	99	94.765	ENSMOCG00000000455	Sf3b1	99	94.765	Microtus_ochrogaster
ENSFALG00000004281	SF3B1	83	93.358	ENSMMOG00000000475	sf3b1	99	93.358	Mola_mola
ENSFALG00000004281	SF3B1	99	98.918	ENSMODG00000012275	SF3B1	99	98.918	Monodelphis_domestica
ENSFALG00000004281	SF3B1	99	93.793	ENSMALG00000017211	sf3b1	99	93.793	Monopterus_albus
ENSFALG00000004281	SF3B1	99	99.459	MGP_CAROLIEiJ_G0014141	Sf3b1	99	99.459	Mus_caroli
ENSFALG00000004281	SF3B1	99	99.459	ENSMUSG00000025982	Sf3b1	99	99.459	Mus_musculus
ENSFALG00000004281	SF3B1	99	99.459	MGP_SPRETEiJ_G0014947	Sf3b1	99	99.459	Mus_spretus
ENSFALG00000004281	SF3B1	99	99.459	ENSMPUG00000007799	SF3B1	99	99.459	Mustela_putorius_furo
ENSFALG00000004281	SF3B1	99	98.224	ENSMLUG00000000840	SF3B1	99	98.224	Myotis_lucifugus
ENSFALG00000004281	SF3B1	99	99.459	ENSNGAG00000021884	-	99	99.459	Nannospalax_galili
ENSFALG00000004281	SF3B1	99	89.171	ENSNBRG00000015816	sf3b1	99	89.171	Neolamprologus_brichardi
ENSFALG00000004281	SF3B1	99	99.459	ENSNLEG00000006861	SF3B1	99	99.459	Nomascus_leucogenys
ENSFALG00000004281	SF3B1	69	100.000	ENSMEUG00000015848	-	67	100.000	Notamacropus_eugenii
ENSFALG00000004281	SF3B1	99	86.315	ENSOPRG00000008596	SF3B1	99	86.315	Ochotona_princeps
ENSFALG00000004281	SF3B1	99	99.459	ENSODEG00000011153	-	99	99.459	Octodon_degus
ENSFALG00000004281	SF3B1	99	92.950	ENSONIG00000013758	sf3b1	99	92.950	Oreochromis_niloticus
ENSFALG00000004281	SF3B1	83	98.893	ENSOCUG00000012722	-	96	98.893	Oryctolagus_cuniculus
ENSFALG00000004281	SF3B1	99	93.487	ENSORLG00000020219	sf3b1	99	93.487	Oryzias_latipes
ENSFALG00000004281	SF3B1	99	93.487	ENSORLG00020001746	sf3b1	99	93.487	Oryzias_latipes_hni
ENSFALG00000004281	SF3B1	63	91.074	ENSORLG00015001759	sf3b1	97	91.074	Oryzias_latipes_hsok
ENSFALG00000004281	SF3B1	99	93.645	ENSOMEG00000019231	sf3b1	99	93.645	Oryzias_melastigma
ENSFALG00000004281	SF3B1	99	99.382	ENSOARG00000015374	SF3B1	99	99.382	Ovis_aries
ENSFALG00000004281	SF3B1	99	99.459	ENSPPAG00000035007	SF3B1	99	99.459	Pan_paniscus
ENSFALG00000004281	SF3B1	99	99.459	ENSPPRG00000009090	SF3B1	99	99.459	Panthera_pardus
ENSFALG00000004281	SF3B1	99	99.459	ENSPTIG00000021557	SF3B1	99	99.459	Panthera_tigris_altaica
ENSFALG00000004281	SF3B1	99	90.762	ENSPTRG00000012771	SF3B1	99	90.916	Pan_troglodytes
ENSFALG00000004281	SF3B1	99	99.459	ENSPANG00000013417	SF3B1	99	99.459	Papio_anubis
ENSFALG00000004281	SF3B1	99	94.939	ENSPKIG00000000784	sf3b1	99	94.939	Paramormyrops_kingsleyae
ENSFALG00000004281	SF3B1	99	97.992	ENSPSIG00000017222	SF3B1	99	97.992	Pelodiscus_sinensis
ENSFALG00000004281	SF3B1	90	94.133	ENSPMGG00000004330	sf3b1	98	94.133	Periophthalmus_magnuspinnatus
ENSFALG00000004281	SF3B1	99	99.459	ENSPEMG00000010699	Sf3b1	100	99.459	Peromyscus_maniculatus_bairdii
ENSFALG00000004281	SF3B1	99	90.268	ENSPMAG00000001311	sf3b1	99	90.421	Petromyzon_marinus
ENSFALG00000004281	SF3B1	99	98.841	ENSPCIG00000010642	SF3B1	99	98.841	Phascolarctos_cinereus
ENSFALG00000004281	SF3B1	99	93.573	ENSPFOG00000000073	sf3b1	99	93.573	Poecilia_formosa
ENSFALG00000004281	SF3B1	99	93.645	ENSPLAG00000002293	sf3b1	99	93.645	Poecilia_latipinna
ENSFALG00000004281	SF3B1	99	93.645	ENSPMEG00000000446	sf3b1	97	93.645	Poecilia_mexicana
ENSFALG00000004281	SF3B1	99	93.721	ENSPREG00000019652	sf3b1	99	93.721	Poecilia_reticulata
ENSFALG00000004281	SF3B1	99	98.723	ENSPPYG00000013044	SF3B1	96	98.723	Pongo_abelii
ENSFALG00000004281	SF3B1	99	99.305	ENSPCAG00000009292	SF3B1	99	99.305	Procavia_capensis
ENSFALG00000004281	SF3B1	99	99.382	ENSPCOG00000024074	SF3B1	99	99.382	Propithecus_coquereli
ENSFALG00000004281	SF3B1	99	99.459	ENSPVAG00000008302	SF3B1	99	99.459	Pteropus_vampyrus
ENSFALG00000004281	SF3B1	99	92.950	ENSPNYG00000014939	sf3b1	99	92.950	Pundamilia_nyererei
ENSFALG00000004281	SF3B1	99	93.951	ENSPNAG00000008288	sf3b1	99	94.028	Pygocentrus_nattereri
ENSFALG00000004281	SF3B1	99	99.459	ENSRNOG00000013516	Sf3b1	99	99.459	Rattus_norvegicus
ENSFALG00000004281	SF3B1	99	95.907	ENSRBIG00000026096	SF3B1	99	95.907	Rhinopithecus_bieti
ENSFALG00000004281	SF3B1	99	99.459	ENSRROG00000031308	SF3B1	99	99.459	Rhinopithecus_roxellana
ENSFALG00000004281	SF3B1	99	99.459	ENSSBOG00000020080	SF3B1	99	99.459	Saimiri_boliviensis_boliviensis
ENSFALG00000004281	SF3B1	99	98.918	ENSSHAG00000017564	SF3B1	99	98.918	Sarcophilus_harrisii
ENSFALG00000004281	SF3B1	99	94.717	ENSSFOG00015021535	sf3b1	99	94.870	Scleropages_formosus
ENSFALG00000004281	SF3B1	99	92.895	ENSSMAG00000013977	sf3b1	98	92.972	Scophthalmus_maximus
ENSFALG00000004281	SF3B1	99	93.640	ENSSDUG00000017422	sf3b1	99	93.640	Seriola_dumerili
ENSFALG00000004281	SF3B1	99	93.563	ENSSLDG00000019495	sf3b1	99	93.563	Seriola_lalandi_dorsalis
ENSFALG00000004281	SF3B1	76	100.000	ENSSARG00000007016	SF3B1	76	100.000	Sorex_araneus
ENSFALG00000004281	SF3B1	99	99.303	ENSSPUG00000000410	SF3B1	99	99.303	Sphenodon_punctatus
ENSFALG00000004281	SF3B1	99	93.946	ENSSPAG00000010451	sf3b1	98	93.946	Stegastes_partitus
ENSFALG00000004281	SF3B1	90	98.983	ENSSSCG00000016075	SF3B1	100	99.827	Sus_scrofa
ENSFALG00000004281	SF3B1	99	99.845	ENSTGUG00000010553	SF3B1	99	99.845	Taeniopygia_guttata
ENSFALG00000004281	SF3B1	99	93.487	ENSTRUG00000015534	sf3b1	99	93.487	Takifugu_rubripes
ENSFALG00000004281	SF3B1	87	99.690	ENSTBEG00000008714	SF3B1	92	99.690	Tupaia_belangeri
ENSFALG00000004281	SF3B1	91	94.185	ENSTTRG00000003414	SF3B1	92	94.185	Tursiops_truncatus
ENSFALG00000004281	SF3B1	93	94.684	ENSUAMG00000018506	SF3B1	99	99.190	Ursus_americanus
ENSFALG00000004281	SF3B1	99	99.459	ENSUMAG00000020945	SF3B1	99	99.459	Ursus_maritimus
ENSFALG00000004281	SF3B1	95	97.183	ENSVPAG00000005798	SF3B1	95	97.183	Vicugna_pacos
ENSFALG00000004281	SF3B1	99	99.459	ENSVVUG00000025948	SF3B1	94	99.459	Vulpes_vulpes
ENSFALG00000004281	SF3B1	99	96.677	ENSXETG00000013339	sf3b1	99	96.677	Xenopus_tropicalis
ENSFALG00000004281	SF3B1	99	90.131	ENSXCOG00000018086	sf3b1	99	90.015	Xiphophorus_couchianus
ENSFALG00000004281	SF3B1	99	93.645	ENSXMAG00000007369	sf3b1	99	93.949	Xiphophorus_maculatus