EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFALG00000004409 (Gene tree)
Gene ID: -
Gene Symbol: RAB20
Alias: FLJ20429
Full Name: RAB20%2C member RAS oncogene family
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 30767 bases
Position: chrJH603335.1:1418058-1448824
Accession: 101817767
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000004590	MMR_HSR1	PF01926.23	3.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000004614	RAB20-201	2302	XM_005037472	ENSFALP00000004590	230 (aa)	XP_005037529	U3JP86

Gene Model

Click here to download ENSFALG00000004409's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000004409's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFALG00000004409	RAB20	50	39.200	ENSFALG00000012783	RAB17	56	39.200
ENSFALG00000004409	RAB20	81	30.151	ENSFALG00000007930	RAB7A	77	30.151
ENSFALG00000004409	RAB20	52	34.646	ENSFALG00000004886	RAB33B	56	34.646
ENSFALG00000004409	RAB20	97	30.172	ENSFALG00000009239	RAB5A	90	30.172
ENSFALG00000004409	RAB20	56	37.500	ENSFALG00000010052	RAB11A	65	37.500
ENSFALG00000004409	RAB20	72	30.168	ENSFALG00000000201	RAB39B	82	30.168
ENSFALG00000004409	RAB20	57	34.532	ENSFALG00000001373	-	64	34.532
ENSFALG00000004409	RAB20	54	30.233	ENSFALG00000005613	RAB2A	61	30.233
ENSFALG00000004409	RAB20	70	33.721	ENSFALG00000011828	-	78	33.721
ENSFALG00000004409	RAB20	54	32.558	ENSFALG00000002597	RAB25	51	32.558
ENSFALG00000004409	RAB20	57	39.416	ENSFALG00000002594	-	58	39.416

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000004409	RAB20	99	60.311	ENSATEG00000011117	rab20	100	60.311	Anabas_testudineus
ENSFALG00000004409	RAB20	100	94.783	ENSAPLG00000011744	RAB20	100	94.783	Anas_platyrhynchos
ENSFALG00000004409	RAB20	99	77.056	ENSACAG00000014045	RAB20	99	77.056	Anolis_carolinensis
ENSFALG00000004409	RAB20	100	59.274	ENSAMXG00000003504	rab20	100	59.274	Astyanax_mexicanus
ENSFALG00000004409	RAB20	99	82.759	ENSCPBG00000005866	RAB20	99	82.759	Chrysemys_picta_bellii
ENSFALG00000004409	RAB20	99	66.234	ENSCSEG00000011160	rab20	100	66.234	Cynoglossus_semilaevis
ENSFALG00000004409	RAB20	99	66.949	ENSDARG00000005049	rab20	97	66.949	Danio_rerio
ENSFALG00000004409	RAB20	99	62.109	ENSELUG00000004092	rab20	98	62.109	Esox_lucius
ENSFALG00000004409	RAB20	99	66.245	ENSGACG00000003527	rab20	100	66.245	Gasterosteus_aculeatus
ENSFALG00000004409	RAB20	99	59.684	ENSHCOG00000013468	rab20	98	59.684	Hippocampus_comes
ENSFALG00000004409	RAB20	100	67.511	ENSIPUG00000000432	RAB20	97	68.354	Ictalurus_punctatus
ENSFALG00000004409	RAB20	100	67.511	ENSIPUG00000018288	RAB20	97	68.354	Ictalurus_punctatus
ENSFALG00000004409	RAB20	99	70.815	ENSLACG00000011001	RAB20	99	70.815	Latimeria_chalumnae
ENSFALG00000004409	RAB20	99	60.938	ENSMAMG00000015214	rab20	98	60.938	Mastacembelus_armatus
ENSFALG00000004409	RAB20	99	65.546	ENSMMOG00000020022	rab20	100	65.546	Mola_mola
ENSFALG00000004409	RAB20	100	75.641	ENSMEUG00000009442	RAB20	100	75.641	Notamacropus_eugenii
ENSFALG00000004409	RAB20	86	50.000	ENSPMAG00000004439	rab20	99	50.698	Petromyzon_marinus
ENSFALG00000004409	RAB20	99	64.583	ENSPNAG00000008867	rab20	99	64.583	Pygocentrus_nattereri
ENSFALG00000004409	RAB20	99	60.769	ENSSMAG00000018818	rab20	100	60.769	Scophthalmus_maximus
ENSFALG00000004409	RAB20	99	61.868	ENSSDUG00000005148	rab20	98	61.868	Seriola_dumerili
ENSFALG00000004409	RAB20	100	98.261	ENSTGUG00000008797	RAB20	100	98.261	Taeniopygia_guttata
ENSFALG00000004409	RAB20	99	58.779	ENSTRUG00000022951	rab20	98	58.779	Takifugu_rubripes
ENSFALG00000004409	RAB20	94	64.706	ENSTNIG00000013920	rab20	100	63.404	Tetraodon_nigroviridis