EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFALG00000005171 (Gene tree)
Gene ID: -
Gene Symbol: RPUSD4
Alias: FLJ14494
Full Name: RNA pseudouridine synthase D4
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 4494 bases
Position: chrJH603225.1:1842873-1847366
Accession: 25898
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000005391	PseudoU_synth_2	PF00849.22	7.8e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000005417	RPUSD4-201	1536	-	ENSFALP00000005391	336 (aa)	-	U3JRI7

Gene Model

Click here to download ENSFALG00000005171's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000005171's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFALG00000005171	RPUSD4	78	30.496	ENSFALG00000012968	RPUSD3	99	30.496

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000005171	RPUSD4	95	58.075	ENSG00000165526	RPUSD4	88	57.186	Homo_sapiens
ENSFALG00000005171	RPUSD4	95	48.000	ENSAPOG00000011024	rpusd4	81	48.000	Acanthochromis_polyacanthus
ENSFALG00000005171	RPUSD4	64	62.105	ENSAMEG00000005953	-	93	62.105	Ailuropoda_melanoleuca
ENSFALG00000005171	RPUSD4	98	59.337	ENSAMEG00000000127	-	88	59.337	Ailuropoda_melanoleuca
ENSFALG00000005171	RPUSD4	98	47.147	ENSACIG00000003533	rpusd4	97	47.147	Amphilophus_citrinellus
ENSFALG00000005171	RPUSD4	95	48.308	ENSAOCG00000015409	rpusd4	80	48.308	Amphiprion_ocellaris
ENSFALG00000005171	RPUSD4	95	48.615	ENSAPEG00000018935	rpusd4	80	48.615	Amphiprion_percula
ENSFALG00000005171	RPUSD4	95	48.607	ENSATEG00000008059	rpusd4	80	48.607	Anabas_testudineus
ENSFALG00000005171	RPUSD4	82	82.796	ENSAPLG00000013250	RPUSD4	99	81.017	Anas_platyrhynchos
ENSFALG00000005171	RPUSD4	99	62.941	ENSACAG00000000189	RPUSD4	93	62.941	Anolis_carolinensis
ENSFALG00000005171	RPUSD4	98	57.057	ENSANAG00000024050	RPUSD4	89	57.057	Aotus_nancymaae
ENSFALG00000005171	RPUSD4	96	49.387	ENSACLG00000020996	rpusd4	83	49.387	Astatotilapia_calliptera
ENSFALG00000005171	RPUSD4	97	50.448	ENSAMXG00000031479	rpusd4	94	50.448	Astyanax_mexicanus
ENSFALG00000005171	RPUSD4	97	58.912	ENSBTAG00000020900	RPUSD4	87	58.912	Bos_taurus
ENSFALG00000005171	RPUSD4	98	58.258	ENSCJAG00000042850	RPUSD4	83	58.258	Callithrix_jacchus
ENSFALG00000005171	RPUSD4	98	58.559	ENSCAFG00000010488	RPUSD4	87	58.735	Canis_familiaris
ENSFALG00000005171	RPUSD4	98	58.559	ENSCAFG00020010621	RPUSD4	87	58.735	Canis_lupus_dingo
ENSFALG00000005171	RPUSD4	95	58.824	ENSCHIG00000009975	RPUSD4	88	57.612	Capra_hircus
ENSFALG00000005171	RPUSD4	98	59.639	ENSTSYG00000008456	RPUSD4	88	59.639	Carlito_syrichta
ENSFALG00000005171	RPUSD4	71	58.197	ENSCAPG00000006040	RPUSD4	94	58.197	Cavia_aperea
ENSFALG00000005171	RPUSD4	97	58.006	ENSCPOG00000014971	RPUSD4	87	58.006	Cavia_porcellus
ENSFALG00000005171	RPUSD4	98	57.958	ENSCCAG00000027838	RPUSD4	89	57.958	Cebus_capucinus
ENSFALG00000005171	RPUSD4	98	56.757	ENSCATG00000041570	RPUSD4	88	56.757	Cercocebus_atys
ENSFALG00000005171	RPUSD4	98	57.958	ENSCLAG00000016553	RPUSD4	88	57.958	Chinchilla_lanigera
ENSFALG00000005171	RPUSD4	98	57.658	ENSCSAG00000002274	RPUSD4	88	57.658	Chlorocebus_sabaeus
ENSFALG00000005171	RPUSD4	79	63.197	ENSCHOG00000010249	RPUSD4	95	62.963	Choloepus_hoffmanni
ENSFALG00000005171	RPUSD4	84	74.825	ENSCPBG00000011175	RPUSD4	99	74.825	Chrysemys_picta_bellii
ENSFALG00000005171	RPUSD4	90	39.365	ENSCSAVG00000000872	-	61	39.365	Ciona_savignyi
ENSFALG00000005171	RPUSD4	99	56.342	ENSCANG00000039684	RPUSD4	89	56.342	Colobus_angolensis_palliatus
ENSFALG00000005171	RPUSD4	99	56.637	ENSCGRG00001024141	Rpusd4	89	56.637	Cricetulus_griseus_chok1gshd
ENSFALG00000005171	RPUSD4	99	56.637	ENSCGRG00000014415	Rpusd4	89	56.637	Cricetulus_griseus_crigri
ENSFALG00000005171	RPUSD4	52	42.458	ENSCSEG00000006462	-	78	42.458	Cynoglossus_semilaevis
ENSFALG00000005171	RPUSD4	96	51.227	ENSCVAG00000008761	rpusd4	83	51.227	Cyprinodon_variegatus
ENSFALG00000005171	RPUSD4	96	51.534	ENSCVAG00000000392	rpusd4	93	51.534	Cyprinodon_variegatus
ENSFALG00000005171	RPUSD4	97	49.091	ENSDARG00000012674	rpusd4	92	49.091	Danio_rerio
ENSFALG00000005171	RPUSD4	98	60.843	ENSDNOG00000020026	RPUSD4	88	60.843	Dasypus_novemcinctus
ENSFALG00000005171	RPUSD4	99	57.612	ENSDORG00000016717	Rpusd4	88	57.612	Dipodomys_ordii
ENSFALG00000005171	RPUSD4	98	58.133	ENSETEG00000013953	RPUSD4	88	58.133	Echinops_telfairi
ENSFALG00000005171	RPUSD4	98	57.530	ENSEASG00005022982	RPUSD4	88	57.530	Equus_asinus_asinus
ENSFALG00000005171	RPUSD4	96	57.798	ENSECAG00000000557	RPUSD4	86	57.798	Equus_caballus
ENSFALG00000005171	RPUSD4	77	59.322	ENSEEUG00000014036	RPUSD4	69	59.322	Erinaceus_europaeus
ENSFALG00000005171	RPUSD4	95	53.012	ENSELUG00000008075	rpusd4	87	53.012	Esox_lucius
ENSFALG00000005171	RPUSD4	98	59.940	ENSFCAG00000029789	RPUSD4	88	59.940	Felis_catus
ENSFALG00000005171	RPUSD4	98	57.357	ENSFDAG00000014307	RPUSD4	89	57.357	Fukomys_damarensis
ENSFALG00000005171	RPUSD4	96	49.080	ENSFHEG00000004329	rpusd4	84	49.080	Fundulus_heteroclitus
ENSFALG00000005171	RPUSD4	96	50.000	ENSGMOG00000017726	rpusd4	97	50.000	Gadus_morhua
ENSFALG00000005171	RPUSD4	97	73.731	ENSGALG00000024326	RPUSD4	95	74.926	Gallus_gallus
ENSFALG00000005171	RPUSD4	96	47.576	ENSGAFG00000021559	rpusd4	84	47.576	Gambusia_affinis
ENSFALG00000005171	RPUSD4	95	47.222	ENSGACG00000001657	rpusd4	97	48.736	Gasterosteus_aculeatus
ENSFALG00000005171	RPUSD4	99	70.796	ENSGAGG00000000132	RPUSD4	93	70.796	Gopherus_agassizii
ENSFALG00000005171	RPUSD4	98	57.485	ENSGGOG00000016494	RPUSD4	88	57.485	Gorilla_gorilla
ENSFALG00000005171	RPUSD4	96	49.387	ENSHBUG00000022838	rpusd4	83	49.387	Haplochromis_burtoni
ENSFALG00000005171	RPUSD4	98	56.287	ENSHGLG00000002285	RPUSD4	88	56.287	Heterocephalus_glaber_female
ENSFALG00000005171	RPUSD4	98	56.287	ENSHGLG00100006385	RPUSD4	88	56.287	Heterocephalus_glaber_male
ENSFALG00000005171	RPUSD4	96	48.930	ENSHCOG00000006612	rpusd4	83	48.930	Hippocampus_comes
ENSFALG00000005171	RPUSD4	96	51.692	ENSIPUG00000023879	rusd4	84	51.692	Ictalurus_punctatus
ENSFALG00000005171	RPUSD4	98	58.859	ENSSTOG00000025280	RPUSD4	91	58.859	Ictidomys_tridecemlineatus
ENSFALG00000005171	RPUSD4	98	57.485	ENSJJAG00000018673	Rpusd4	89	57.485	Jaculus_jaculus
ENSFALG00000005171	RPUSD4	96	48.773	ENSKMAG00000021805	rpusd4	85	48.773	Kryptolebias_marmoratus
ENSFALG00000005171	RPUSD4	95	47.840	ENSLBEG00000020394	rpusd4	91	47.840	Labrus_bergylta
ENSFALG00000005171	RPUSD4	96	57.927	ENSLACG00000011028	RPUSD4	83	57.927	Latimeria_chalumnae
ENSFALG00000005171	RPUSD4	95	48.297	ENSLOCG00000003124	rpusd4	86	48.297	Lepisosteus_oculatus
ENSFALG00000005171	RPUSD4	98	57.831	ENSLAFG00000005211	RPUSD4	100	51.712	Loxodonta_africana
ENSFALG00000005171	RPUSD4	98	57.357	ENSMFAG00000039513	RPUSD4	88	57.357	Macaca_fascicularis
ENSFALG00000005171	RPUSD4	98	57.658	ENSMMUG00000007933	RPUSD4	88	57.658	Macaca_mulatta
ENSFALG00000005171	RPUSD4	98	57.357	ENSMNEG00000027414	RPUSD4	88	57.357	Macaca_nemestrina
ENSFALG00000005171	RPUSD4	98	57.357	ENSMLEG00000042461	RPUSD4	88	57.357	Mandrillus_leucophaeus
ENSFALG00000005171	RPUSD4	96	47.720	ENSMAMG00000023839	rpusd4	85	47.720	Mastacembelus_armatus
ENSFALG00000005171	RPUSD4	96	49.387	ENSMZEG00005011999	rpusd4	83	49.387	Maylandia_zebra
ENSFALG00000005171	RPUSD4	82	80.714	ENSMGAG00000000840	RPUSD4	99	75.617	Meleagris_gallopavo
ENSFALG00000005171	RPUSD4	99	57.227	ENSMAUG00000010280	Rpusd4	89	57.227	Mesocricetus_auratus
ENSFALG00000005171	RPUSD4	98	58.258	ENSMICG00000015979	RPUSD4	89	61.409	Microcebus_murinus
ENSFALG00000005171	RPUSD4	99	55.457	ENSMOCG00000000661	Rpusd4	89	55.457	Microtus_ochrogaster
ENSFALG00000005171	RPUSD4	86	50.508	ENSMMOG00000021731	rpusd4	88	50.508	Mola_mola
ENSFALG00000005171	RPUSD4	93	61.830	ENSMODG00000004521	RPUSD4	81	61.830	Monodelphis_domestica
ENSFALG00000005171	RPUSD4	89	49.508	ENSMALG00000005839	rpusd4	97	48.589	Monopterus_albus
ENSFALG00000005171	RPUSD4	99	58.112	MGP_CAROLIEiJ_G0031954	Rpusd4	89	58.112	Mus_caroli
ENSFALG00000005171	RPUSD4	99	58.112	ENSMUSG00000032044	Rpusd4	89	58.112	Mus_musculus
ENSFALG00000005171	RPUSD4	99	58.407	MGP_PahariEiJ_G0014819	Rpusd4	89	58.407	Mus_pahari
ENSFALG00000005171	RPUSD4	99	57.817	MGP_SPRETEiJ_G0033078	Rpusd4	89	57.817	Mus_spretus
ENSFALG00000005171	RPUSD4	98	59.337	ENSMPUG00000006608	RPUSD4	88	59.337	Mustela_putorius_furo
ENSFALG00000005171	RPUSD4	74	61.811	ENSMLUG00000029348	-	99	61.811	Myotis_lucifugus
ENSFALG00000005171	RPUSD4	98	58.434	ENSMLUG00000017328	-	87	58.434	Myotis_lucifugus
ENSFALG00000005171	RPUSD4	98	59.337	ENSNGAG00000020847	Rpusd4	88	59.337	Nannospalax_galili
ENSFALG00000005171	RPUSD4	99	48.665	ENSNBRG00000005207	rpusd4	98	48.665	Neolamprologus_brichardi
ENSFALG00000005171	RPUSD4	99	57.227	ENSNLEG00000007465	RPUSD4	89	57.227	Nomascus_leucogenys
ENSFALG00000005171	RPUSD4	96	61.631	ENSMEUG00000004370	RPUSD4	89	61.631	Notamacropus_eugenii
ENSFALG00000005171	RPUSD4	99	57.015	ENSODEG00000004577	RPUSD4	88	57.015	Octodon_degus
ENSFALG00000005171	RPUSD4	98	48.955	ENSONIG00000018879	rpusd4	90	48.955	Oreochromis_niloticus
ENSFALG00000005171	RPUSD4	86	64.189	ENSOANG00000007247	RPUSD4	95	64.094	Ornithorhynchus_anatinus
ENSFALG00000005171	RPUSD4	98	58.929	ENSOCUG00000017039	RPUSD4	88	58.929	Oryctolagus_cuniculus
ENSFALG00000005171	RPUSD4	99	45.773	ENSORLG00000002750	rpusd4	94	45.773	Oryzias_latipes
ENSFALG00000005171	RPUSD4	98	45.481	ENSORLG00020002044	rpusd4	85	45.481	Oryzias_latipes_hni
ENSFALG00000005171	RPUSD4	98	46.221	ENSORLG00015020034	rpusd4	85	46.221	Oryzias_latipes_hsok
ENSFALG00000005171	RPUSD4	96	48.318	ENSOMEG00000004861	rpusd4	80	48.318	Oryzias_melastigma
ENSFALG00000005171	RPUSD4	99	59.763	ENSOGAG00000008922	RPUSD4	89	59.763	Otolemur_garnettii
ENSFALG00000005171	RPUSD4	95	59.133	ENSOARG00000012238	RPUSD4	88	57.910	Ovis_aries
ENSFALG00000005171	RPUSD4	98	57.186	ENSPPAG00000042883	RPUSD4	82	57.186	Pan_paniscus
ENSFALG00000005171	RPUSD4	98	59.940	ENSPPRG00000003081	RPUSD4	88	59.940	Panthera_pardus
ENSFALG00000005171	RPUSD4	98	59.940	ENSPTIG00000012059	RPUSD4	86	62.126	Panthera_tigris_altaica
ENSFALG00000005171	RPUSD4	98	57.186	ENSPTRG00000004454	RPUSD4	88	57.186	Pan_troglodytes
ENSFALG00000005171	RPUSD4	98	57.357	ENSPANG00000015040	RPUSD4	88	57.357	Papio_anubis
ENSFALG00000005171	RPUSD4	95	57.407	ENSPKIG00000023986	rpusd4	83	57.407	Paramormyrops_kingsleyae
ENSFALG00000005171	RPUSD4	88	72.241	ENSPSIG00000014268	RPUSD4	95	72.241	Pelodiscus_sinensis
ENSFALG00000005171	RPUSD4	99	47.024	ENSPMGG00000002806	rpusd4	94	47.024	Periophthalmus_magnuspinnatus
ENSFALG00000005171	RPUSD4	99	50.442	ENSPEMG00000000278	Rpusd4	89	50.442	Peromyscus_maniculatus_bairdii
ENSFALG00000005171	RPUSD4	88	43.675	ENSPMAG00000008183	rpusd4	96	43.675	Petromyzon_marinus
ENSFALG00000005171	RPUSD4	99	60.237	ENSPCIG00000010212	RPUSD4	92	60.237	Phascolarctos_cinereus
ENSFALG00000005171	RPUSD4	96	46.386	ENSPFOG00000019030	rpusd4	87	46.386	Poecilia_formosa
ENSFALG00000005171	RPUSD4	96	46.970	ENSPLAG00000016848	rpusd4	84	46.970	Poecilia_latipinna
ENSFALG00000005171	RPUSD4	96	46.970	ENSPMEG00000017534	rpusd4	84	46.970	Poecilia_mexicana
ENSFALG00000005171	RPUSD4	91	47.436	ENSPREG00000005689	rpusd4	81	47.436	Poecilia_reticulata
ENSFALG00000005171	RPUSD4	98	57.658	ENSPPYG00000004043	RPUSD4	88	57.658	Pongo_abelii
ENSFALG00000005171	RPUSD4	79	55.866	ENSPCAG00000000753	RPUSD4	72	55.866	Procavia_capensis
ENSFALG00000005171	RPUSD4	99	52.819	ENSPCOG00000020694	RPUSD4	90	52.819	Propithecus_coquereli
ENSFALG00000005171	RPUSD4	98	58.133	ENSPVAG00000000988	RPUSD4	88	58.133	Pteropus_vampyrus
ENSFALG00000005171	RPUSD4	96	49.387	ENSPNYG00000009652	rpusd4	83	49.387	Pundamilia_nyererei
ENSFALG00000005171	RPUSD4	95	48.916	ENSPNAG00000012264	rpusd4	85	48.916	Pygocentrus_nattereri
ENSFALG00000005171	RPUSD4	100	57.353	ENSRNOG00000011567	Rpusd4	90	57.353	Rattus_norvegicus
ENSFALG00000005171	RPUSD4	99	56.805	ENSRBIG00000034842	RPUSD4	89	56.637	Rhinopithecus_bieti
ENSFALG00000005171	RPUSD4	99	56.805	ENSRROG00000039753	RPUSD4	89	56.637	Rhinopithecus_roxellana
ENSFALG00000005171	RPUSD4	99	57.270	ENSSBOG00000030413	RPUSD4	90	57.270	Saimiri_boliviensis_boliviensis
ENSFALG00000005171	RPUSD4	89	63.576	ENSSHAG00000008304	RPUSD4	99	63.576	Sarcophilus_harrisii
ENSFALG00000005171	RPUSD4	100	56.268	ENSSFOG00015006203	rpusd4	93	56.268	Scleropages_formosus
ENSFALG00000005171	RPUSD4	97	50.148	ENSSMAG00000020978	rpusd4	88	50.453	Scophthalmus_maximus
ENSFALG00000005171	RPUSD4	94	48.287	ENSSDUG00000013399	rpusd4	84	48.287	Seriola_dumerili
ENSFALG00000005171	RPUSD4	94	48.287	ENSSLDG00000023507	rpusd4	84	48.287	Seriola_lalandi_dorsalis
ENSFALG00000005171	RPUSD4	99	64.793	ENSSPUG00000001401	RPUSD4	93	65.385	Sphenodon_punctatus
ENSFALG00000005171	RPUSD4	95	47.531	ENSSPAG00000012163	rpusd4	83	47.531	Stegastes_partitus
ENSFALG00000005171	RPUSD4	98	57.658	ENSSSCG00000015233	RPUSD4	88	57.658	Sus_scrofa
ENSFALG00000005171	RPUSD4	88	94.595	ENSTGUG00000000773	RPUSD4	100	94.595	Taeniopygia_guttata
ENSFALG00000005171	RPUSD4	95	48.148	ENSTRUG00000012283	rpusd4	83	48.148	Takifugu_rubripes
ENSFALG00000005171	RPUSD4	95	47.531	ENSTNIG00000014676	rpusd4	82	47.531	Tetraodon_nigroviridis
ENSFALG00000005171	RPUSD4	98	57.057	ENSTTRG00000001555	RPUSD4	88	57.057	Tursiops_truncatus
ENSFALG00000005171	RPUSD4	98	59.940	ENSUMAG00000002219	RPUSD4	88	59.940	Ursus_maritimus
ENSFALG00000005171	RPUSD4	70	57.627	ENSVPAG00000001066	RPUSD4	88	57.627	Vicugna_pacos
ENSFALG00000005171	RPUSD4	98	58.559	ENSVVUG00000020101	RPUSD4	87	58.735	Vulpes_vulpes
ENSFALG00000005171	RPUSD4	96	47.576	ENSXCOG00000004676	rpusd4	87	47.273	Xiphophorus_couchianus
ENSFALG00000005171	RPUSD4	96	47.879	ENSXMAG00000023351	rpusd4	84	47.879	Xiphophorus_maculatus