EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFALG00000005372 (Gene tree)
Gene ID: -
Gene Symbol: PABPC1L
Alias: C20orf119|PABPC1L1|dJ1069P2.3|ePAB
Full Name: poly(A) binding protein cytoplasmic 1 like
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 9554 bases
Position: chrJH603233.1:1380822-1390375
Accession: 15797
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000005593	RRM_5	PF13893.6	1.7e-08	1	1
ENSFALP00000005593	RRM_1	PF00076.22	7.7e-92	1	4
ENSFALP00000005593	RRM_1	PF00076.22	7.7e-92	2	4
ENSFALP00000005593	RRM_1	PF00076.22	7.7e-92	3	4
ENSFALP00000005593	RRM_1	PF00076.22	7.7e-92	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000005620	PABPC1L-201	1913	-	ENSFALP00000005593	594 (aa)	-	U3JS39

Gene Model

Click here to download ENSFALG00000005372's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000005372's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFALG00000005372	PABPC1L	65	33.735	ENSFALG00000005331	ELAVL4	87	33.735
ENSFALG00000005372	PABPC1L	51	36.047	ENSFALG00000006402	CELF1	62	36.047
ENSFALG00000005372	PABPC1L	61	34.211	ENSFALG00000001873	CELF2	54	34.211
ENSFALG00000005372	PABPC1L	61	31.818	ENSFALG00000002173	TIA1	76	31.818
ENSFALG00000005372	PABPC1L	69	41.667	ENSFALG00000011725	ELAVL1	81	41.667
ENSFALG00000005372	PABPC1L	65	34.940	ENSFALG00000007363	ELAVL2	100	34.940
ENSFALG00000005372	PABPC1L	90	69.832	ENSFALG00000000543	PABPC4	89	65.986
ENSFALG00000005372	PABPC1L	97	66.163	ENSFALG00000005841	PABPC1	87	66.224
ENSFALG00000005372	PABPC1L	54	36.047	ENSFALG00000009584	-	60	35.616
ENSFALG00000005372	PABPC1L	61	37.333	ENSFALG00000007768	RBM19	73	37.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000005372	PABPC1L	90	74.954	ENSG00000101104	PABPC1L	98	83.951	Homo_sapiens
ENSFALG00000005372	PABPC1L	93	69.259	ENSAPOG00000010842	pabpc1l	85	70.315	Acanthochromis_polyacanthus
ENSFALG00000005372	PABPC1L	70	86.441	ENSAMEG00000004099	PABPC1L	69	82.393	Ailuropoda_melanoleuca
ENSFALG00000005372	PABPC1L	97	67.474	ENSACIG00000021004	-	85	75.058	Amphilophus_citrinellus
ENSFALG00000005372	PABPC1L	87	72.201	ENSAOCG00000006167	-	83	71.727	Amphiprion_ocellaris
ENSFALG00000005372	PABPC1L	97	67.071	ENSAPEG00000010558	-	99	83.568	Amphiprion_percula
ENSFALG00000005372	PABPC1L	87	72.937	ENSATEG00000007428	pabpc1l	86	72.285	Anabas_testudineus
ENSFALG00000005372	PABPC1L	96	82.982	ENSAPLG00000008415	PABPC1L	80	91.716	Anas_platyrhynchos
ENSFALG00000005372	PABPC1L	98	79.658	ENSACAG00000011841	PABPC1L	89	79.658	Anolis_carolinensis
ENSFALG00000005372	PABPC1L	90	73.665	ENSANAG00000026826	PABPC1L	88	73.665	Aotus_nancymaae
ENSFALG00000005372	PABPC1L	98	68.151	ENSACLG00000024791	pabpc1l	86	72.007	Astatotilapia_calliptera
ENSFALG00000005372	PABPC1L	93	74.910	ENSAMXG00000013552	pabpc1l	84	77.111	Astyanax_mexicanus
ENSFALG00000005372	PABPC1L	63	76.735	ENSBTAG00000016849	PABPC1L	74	76.735	Bos_taurus
ENSFALG00000005372	PABPC1L	65	94.048	ENSBTAG00000055300	-	100	94.048	Bos_taurus
ENSFALG00000005372	PABPC1L	62	79.885	ENSCJAG00000038506	-	100	79.885	Callithrix_jacchus
ENSFALG00000005372	PABPC1L	90	74.217	ENSCJAG00000017628	PABPC1L	88	74.217	Callithrix_jacchus
ENSFALG00000005372	PABPC1L	74	81.777	ENSCAFG00000009573	PABPC1L	68	81.777	Canis_familiaris
ENSFALG00000005372	PABPC1L	87	76.108	ENSCAFG00020013828	PABPC1L	84	76.108	Canis_lupus_dingo
ENSFALG00000005372	PABPC1L	87	77.220	ENSCHIG00000025759	PABPC1L	78	77.220	Capra_hircus
ENSFALG00000005372	PABPC1L	90	72.560	ENSTSYG00000006645	PABPC1L	88	72.560	Carlito_syrichta
ENSFALG00000005372	PABPC1L	83	71.034	ENSCAPG00000014519	PABPC1L	79	71.034	Cavia_aperea
ENSFALG00000005372	PABPC1L	85	74.653	ENSCPOG00000013633	PABPC1L	82	74.653	Cavia_porcellus
ENSFALG00000005372	PABPC1L	90	73.665	ENSCCAG00000023338	PABPC1L	88	73.665	Cebus_capucinus
ENSFALG00000005372	PABPC1L	90	75.138	ENSCATG00000034065	PABPC1L	88	75.138	Cercocebus_atys
ENSFALG00000005372	PABPC1L	85	74.059	ENSCLAG00000005298	PABPC1L	82	74.059	Chinchilla_lanigera
ENSFALG00000005372	PABPC1L	90	74.770	ENSCSAG00000014242	PABPC1L	88	74.770	Chlorocebus_sabaeus
ENSFALG00000005372	PABPC1L	55	82.576	ENSCPBG00000007810	-	81	82.576	Chrysemys_picta_bellii
ENSFALG00000005372	PABPC1L	75	93.905	ENSCPBG00000017755	-	99	93.905	Chrysemys_picta_bellii
ENSFALG00000005372	PABPC1L	72	57.288	ENSCING00000002796	-	68	51.009	Ciona_intestinalis
ENSFALG00000005372	PABPC1L	99	49.599	ENSCSAVG00000003102	-	100	82.550	Ciona_savignyi
ENSFALG00000005372	PABPC1L	80	60.324	ENSCSAVG00000004246	-	79	63.974	Ciona_savignyi
ENSFALG00000005372	PABPC1L	87	76.091	ENSCANG00000037530	PABPC1L	85	76.091	Colobus_angolensis_palliatus
ENSFALG00000005372	PABPC1L	85	70.217	ENSCGRG00001021938	Pabpc1l	81	70.217	Cricetulus_griseus_chok1gshd
ENSFALG00000005372	PABPC1L	85	70.217	ENSCGRG00000007946	Pabpc1l	81	70.217	Cricetulus_griseus_crigri
ENSFALG00000005372	PABPC1L	74	75.854	ENSCSEG00000021295	pabpc1l	77	75.854	Cynoglossus_semilaevis
ENSFALG00000005372	PABPC1L	97	68.804	ENSCVAG00000015943	-	86	89.231	Cyprinodon_variegatus
ENSFALG00000005372	PABPC1L	99	69.076	ENSDARG00000002597	pabpc1l	88	89.231	Danio_rerio
ENSFALG00000005372	PABPC1L	88	78.776	ENSDNOG00000048450	PABPC1L	84	78.776	Dasypus_novemcinctus
ENSFALG00000005372	PABPC1L	90	71.795	ENSDORG00000001067	Pabpc1l	88	71.795	Dipodomys_ordii
ENSFALG00000005372	PABPC1L	92	83.740	ENSETEG00000009969	PABPC1L	58	83.740	Echinops_telfairi
ENSFALG00000005372	PABPC1L	55	84.906	ENSEASG00005023407	-	64	84.906	Equus_asinus_asinus
ENSFALG00000005372	PABPC1L	65	92.857	ENSEASG00005023408	-	100	92.857	Equus_asinus_asinus
ENSFALG00000005372	PABPC1L	70	77.682	ENSECAG00000040139	-	83	77.682	Equus_caballus
ENSFALG00000005372	PABPC1L	98	66.610	ENSEEUG00000005978	PABPC1L	86	71.614	Erinaceus_europaeus
ENSFALG00000005372	PABPC1L	90	73.840	ENSELUG00000001811	pabpc1l	85	73.840	Esox_lucius
ENSFALG00000005372	PABPC1L	87	77.264	ENSFCAG00000011692	PABPC1L	84	77.264	Felis_catus
ENSFALG00000005372	PABPC1L	82	75.153	ENSFDAG00000008291	PABPC1L	81	75.356	Fukomys_damarensis
ENSFALG00000005372	PABPC1L	97	69.497	ENSFHEG00000003398	pabpc1l	91	69.395	Fundulus_heteroclitus
ENSFALG00000005372	PABPC1L	90	73.371	ENSGMOG00000004437	pabpc1l	85	73.371	Gadus_morhua
ENSFALG00000005372	PABPC1L	70	94.915	ENSGALG00000004123	PABPC1L	98	94.915	Gallus_gallus
ENSFALG00000005372	PABPC1L	97	64.878	ENSGAFG00000021057	pabpc1l	85	68.070	Gambusia_affinis
ENSFALG00000005372	PABPC1L	97	68.512	ENSGACG00000002792	pabpc1l	86	71.800	Gasterosteus_aculeatus
ENSFALG00000005372	PABPC1L	98	83.590	ENSGAGG00000000589	PABPC1L	89	83.590	Gopherus_agassizii
ENSFALG00000005372	PABPC1L	90	74.770	ENSGGOG00000004584	PABPC1L	88	74.770	Gorilla_gorilla
ENSFALG00000005372	PABPC1L	98	68.151	ENSHBUG00000006134	pabpc1l	86	72.007	Haplochromis_burtoni
ENSFALG00000005372	PABPC1L	85	75.099	ENSHGLG00000008434	PABPC1L	83	75.099	Heterocephalus_glaber_female
ENSFALG00000005372	PABPC1L	85	75.099	ENSHGLG00100012151	PABPC1L	83	75.099	Heterocephalus_glaber_male
ENSFALG00000005372	PABPC1L	61	85.393	ENSHGLG00100019506	-	100	85.393	Heterocephalus_glaber_male
ENSFALG00000005372	PABPC1L	91	68.061	ENSHCOG00000009270	pabpc1l	84	69.685	Hippocampus_comes
ENSFALG00000005372	PABPC1L	93	75.360	ENSIPUG00000012602	pabpc1l	86	76.147	Ictalurus_punctatus
ENSFALG00000005372	PABPC1L	61	62.644	ENSIPUG00000006760	-	88	62.644	Ictalurus_punctatus
ENSFALG00000005372	PABPC1L	62	63.218	ENSIPUG00000006780	-	85	63.218	Ictalurus_punctatus
ENSFALG00000005372	PABPC1L	97	68.900	ENSSTOG00000003739	PABPC1L	88	72.744	Ictidomys_tridecemlineatus
ENSFALG00000005372	PABPC1L	90	56.458	ENSJJAG00000022406	Pabpc1l	87	56.458	Jaculus_jaculus
ENSFALG00000005372	PABPC1L	90	73.221	ENSKMAG00000016847	pabpc1l	93	73.221	Kryptolebias_marmoratus
ENSFALG00000005372	PABPC1L	97	65.077	ENSLBEG00000010084	pabpc1l	84	71.161	Labrus_bergylta
ENSFALG00000005372	PABPC1L	99	74.333	ENSLACG00000005762	PABPC1L	96	81.369	Latimeria_chalumnae
ENSFALG00000005372	PABPC1L	99	73.142	ENSLOCG00000007519	pabpc1l	85	78.664	Lepisosteus_oculatus
ENSFALG00000005372	PABPC1L	88	76.360	ENSLAFG00000003553	PABPC1L	84	76.360	Loxodonta_africana
ENSFALG00000005372	PABPC1L	90	75.138	ENSMFAG00000040365	PABPC1L	88	75.138	Macaca_fascicularis
ENSFALG00000005372	PABPC1L	88	76.864	ENSMNEG00000032298	PABPC1L	83	77.264	Macaca_nemestrina
ENSFALG00000005372	PABPC1L	90	75.138	ENSMLEG00000043139	PABPC1L	88	75.138	Mandrillus_leucophaeus
ENSFALG00000005372	PABPC1L	92	69.891	ENSMAMG00000011854	pabpc1l	85	71.456	Mastacembelus_armatus
ENSFALG00000005372	PABPC1L	98	68.151	ENSMZEG00005023713	pabpc1l	86	72.007	Maylandia_zebra
ENSFALG00000005372	PABPC1L	89	89.564	ENSMGAG00000003674	PABPC1L	83	89.564	Meleagris_gallopavo
ENSFALG00000005372	PABPC1L	83	69.636	ENSMOCG00000013186	Pabpc1l	80	69.636	Microtus_ochrogaster
ENSFALG00000005372	PABPC1L	88	72.414	ENSMMOG00000020574	-	90	89.231	Mola_mola
ENSFALG00000005372	PABPC1L	90	78.996	ENSMODG00000016198	PABPC1L	88	78.996	Monodelphis_domestica
ENSFALG00000005372	PABPC1L	93	68.829	ENSMALG00000021622	pabpc1l	88	70.370	Monopterus_albus
ENSFALG00000005372	PABPC1L	85	69.841	MGP_CAROLIEiJ_G0024627	Pabpc1l	81	69.841	Mus_caroli
ENSFALG00000005372	PABPC1L	85	69.643	ENSMUSG00000054582	Pabpc1l	81	69.643	Mus_musculus
ENSFALG00000005372	PABPC1L	85	70.040	MGP_PahariEiJ_G0026071	Pabpc1l	81	70.040	Mus_pahari
ENSFALG00000005372	PABPC1L	85	69.841	MGP_SPRETEiJ_G0025549	Pabpc1l	81	69.841	Mus_spretus
ENSFALG00000005372	PABPC1L	87	77.071	ENSMPUG00000017646	PABPC1L	82	77.071	Mustela_putorius_furo
ENSFALG00000005372	PABPC1L	85	74.175	ENSMLUG00000006324	PABPC1L	81	74.175	Myotis_lucifugus
ENSFALG00000005372	PABPC1L	83	71.660	ENSNGAG00000010458	Pabpc1l	79	71.660	Nannospalax_galili
ENSFALG00000005372	PABPC1L	91	71.985	ENSNBRG00000016633	pabpc1l	85	75.926	Neolamprologus_brichardi
ENSFALG00000005372	PABPC1L	82	78.189	ENSMEUG00000007905	-	78	78.189	Notamacropus_eugenii
ENSFALG00000005372	PABPC1L	83	77.328	ENSOPRG00000011846	PABPC1L	80	77.328	Ochotona_princeps
ENSFALG00000005372	PABPC1L	60	78.125	ENSODEG00000002920	-	97	78.125	Octodon_degus
ENSFALG00000005372	PABPC1L	90	68.216	ENSODEG00000015482	PABPC1L	91	68.216	Octodon_degus
ENSFALG00000005372	PABPC1L	98	68.151	ENSONIG00000017314	pabpc1l	86	72.007	Oreochromis_niloticus
ENSFALG00000005372	PABPC1L	84	71.000	ENSOANG00000015793	-	89	71.000	Ornithorhynchus_anatinus
ENSFALG00000005372	PABPC1L	82	75.354	ENSOCUG00000003005	PABPC1L	75	75.960	Oryctolagus_cuniculus
ENSFALG00000005372	PABPC1L	87	73.166	ENSORLG00000010322	pabpc1l	86	75.576	Oryzias_latipes
ENSFALG00000005372	PABPC1L	87	73.166	ENSORLG00020021193	pabpc1l	86	75.576	Oryzias_latipes_hni
ENSFALG00000005372	PABPC1L	87	73.166	ENSORLG00015017018	pabpc1l	86	75.576	Oryzias_latipes_hsok
ENSFALG00000005372	PABPC1L	90	68.375	ENSOMEG00000010789	pabpc1l	85	68.375	Oryzias_melastigma
ENSFALG00000005372	PABPC1L	92	73.126	ENSOGAG00000032999	PABPC1L	84	75.142	Otolemur_garnettii
ENSFALG00000005372	PABPC1L	87	77.799	ENSOARG00000004578	PABPC1L	84	77.799	Ovis_aries
ENSFALG00000005372	PABPC1L	90	75.138	ENSPPAG00000039677	PABPC1L	88	75.138	Pan_paniscus
ENSFALG00000005372	PABPC1L	65	74.074	ENSPPRG00000019327	-	98	74.074	Panthera_pardus
ENSFALG00000005372	PABPC1L	86	76.998	ENSPTIG00000006524	PABPC1L	84	76.998	Panthera_tigris_altaica
ENSFALG00000005372	PABPC1L	65	84.259	ENSPTRG00000013531	PABPC1L	98	84.259	Pan_troglodytes
ENSFALG00000005372	PABPC1L	90	75.138	ENSPANG00000018788	PABPC1L	88	75.138	Papio_anubis
ENSFALG00000005372	PABPC1L	55	83.206	ENSPKIG00000016810	-	93	83.206	Paramormyrops_kingsleyae
ENSFALG00000005372	PABPC1L	89	77.419	ENSPKIG00000007322	pabpc1l	90	73.381	Paramormyrops_kingsleyae
ENSFALG00000005372	PABPC1L	70	93.705	ENSPSIG00000013289	PABPC1L	98	93.705	Pelodiscus_sinensis
ENSFALG00000005372	PABPC1L	65	87.121	ENSPMGG00000023117	pabpc1l	97	83.721	Periophthalmus_magnuspinnatus
ENSFALG00000005372	PABPC1L	74	71.574	ENSPMGG00000023121	-	92	71.574	Periophthalmus_magnuspinnatus
ENSFALG00000005372	PABPC1L	83	70.040	ENSPEMG00000020671	Pabpc1l	79	70.445	Peromyscus_maniculatus_bairdii
ENSFALG00000005372	PABPC1L	97	68.782	ENSPFOG00000013241	pabpc1l	87	70.780	Poecilia_formosa
ENSFALG00000005372	PABPC1L	65	90.000	ENSPLAG00000023686	-	92	90.000	Poecilia_latipinna
ENSFALG00000005372	PABPC1L	97	68.611	ENSPLAG00000017490	-	82	76.261	Poecilia_latipinna
ENSFALG00000005372	PABPC1L	65	90.000	ENSPMEG00000009185	-	88	90.000	Poecilia_mexicana
ENSFALG00000005372	PABPC1L	97	68.675	ENSPMEG00000007677	pabpc1l	86	71.481	Poecilia_mexicana
ENSFALG00000005372	PABPC1L	70	81.840	ENSPREG00000015886	pabpc1l	99	81.840	Poecilia_reticulata
ENSFALG00000005372	PABPC1L	90	74.770	ENSPPYG00000011042	PABPC1L	88	74.770	Pongo_abelii
ENSFALG00000005372	PABPC1L	64	92.188	ENSPCAG00000011787	-	75	92.188	Procavia_capensis
ENSFALG00000005372	PABPC1L	91	73.993	ENSPCOG00000020630	PABPC1L	89	73.993	Propithecus_coquereli
ENSFALG00000005372	PABPC1L	92	72.661	ENSPVAG00000012663	PABPC1L	82	76.877	Pteropus_vampyrus
ENSFALG00000005372	PABPC1L	99	67.340	ENSPNYG00000004101	pabpc1l	91	71.168	Pundamilia_nyererei
ENSFALG00000005372	PABPC1L	93	67.204	ENSPNAG00000021248	pabpc1l	84	68.831	Pygocentrus_nattereri
ENSFALG00000005372	PABPC1L	85	69.246	ENSRNOG00000012750	Pabpc1l	81	69.246	Rattus_norvegicus
ENSFALG00000005372	PABPC1L	90	74.954	ENSRBIG00000035381	PABPC1L	88	74.954	Rhinopithecus_bieti
ENSFALG00000005372	PABPC1L	90	74.770	ENSRROG00000044498	PABPC1L	88	74.770	Rhinopithecus_roxellana
ENSFALG00000005372	PABPC1L	90	74.033	ENSSBOG00000009532	-	88	74.033	Saimiri_boliviensis_boliviensis
ENSFALG00000005372	PABPC1L	86	72.180	ENSSHAG00000011446	PABPC1L	80	72.180	Sarcophilus_harrisii
ENSFALG00000005372	PABPC1L	97	73.129	ENSSFOG00015017304	pabpc1l	86	77.222	Scleropages_formosus
ENSFALG00000005372	PABPC1L	99	66.162	ENSSMAG00000010516	pabpc1l	98	86.029	Scophthalmus_maximus
ENSFALG00000005372	PABPC1L	99	67.167	ENSSDUG00000014743	pabpc1l	85	71.639	Seriola_dumerili
ENSFALG00000005372	PABPC1L	99	66.610	ENSSLDG00000006981	pabpc1l	98	86.603	Seriola_lalandi_dorsalis
ENSFALG00000005372	PABPC1L	98	80.513	ENSSPUG00000004233	PABPC1L	89	80.342	Sphenodon_punctatus
ENSFALG00000005372	PABPC1L	74	76.244	ENSSPAG00000017137	pabpc1l	79	76.244	Stegastes_partitus
ENSFALG00000005372	PABPC1L	97	71.528	ENSSSCG00000007382	PABPC1L	87	75.373	Sus_scrofa
ENSFALG00000005372	PABPC1L	93	91.829	ENSTGUG00000005114	PABPC1L	85	93.956	Taeniopygia_guttata
ENSFALG00000005372	PABPC1L	97	68.750	ENSTRUG00000011085	pabpc1l	85	72.472	Takifugu_rubripes
ENSFALG00000005372	PABPC1L	91	69.613	ENSTNIG00000017903	pabpc1l	84	69.613	Tetraodon_nigroviridis
ENSFALG00000005372	PABPC1L	84	85.616	ENSTBEG00000002851	PABPC1L	68	85.616	Tupaia_belangeri
ENSFALG00000005372	PABPC1L	85	76.680	ENSTTRG00000007618	PABPC1L	84	76.680	Tursiops_truncatus
ENSFALG00000005372	PABPC1L	82	79.388	ENSUAMG00000017682	PABPC1L	82	79.388	Ursus_americanus
ENSFALG00000005372	PABPC1L	69	83.008	ENSUMAG00000025436	PABPC1L	92	83.008	Ursus_maritimus
ENSFALG00000005372	PABPC1L	86	82.609	ENSVVUG00000018939	PABPC1L	78	82.609	Vulpes_vulpes
ENSFALG00000005372	PABPC1L	90	75.791	ENSXETG00000022831	pabpc1l	85	75.791	Xenopus_tropicalis
ENSFALG00000005372	PABPC1L	87	73.321	ENSXCOG00000005459	pabpc1l	99	85.106	Xiphophorus_couchianus
ENSFALG00000005372	PABPC1L	92	71.091	ENSXMAG00000017135	pabpc1l	83	75.625	Xiphophorus_maculatus