EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFALG00000005509 (Gene tree)
Gene ID: -
Gene Symbol: LSM6
Alias: YDR378C
Full Name: LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Minus strand
Length: 7524 bases
Position: chrJH603188.1:4938747-4946270
Accession: 17017
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000005737	LSM	PF01423.22	9.3e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000005764	LSM6-201	2375	-	ENSFALP00000005737	87 (aa)	-	U3JSI3

Gene Model

Click here to download ENSFALG00000005509's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000005509's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFALG00000005509	LSM6	76	51.515	ENSFALG00000010799	SNRPF	78	50.746
ENSFALG00000005509	LSM6	66	31.579	ENSFALG00000008384	SNRPG	81	31.579

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000005509	LSM6	92	100.000	ENSG00000164167	LSM6	100	100.000	Homo_sapiens
ENSFALG00000005509	LSM6	92	95.000	ENSAPOG00000019832	lsm6	100	95.000	Acanthochromis_polyacanthus
ENSFALG00000005509	LSM6	92	100.000	ENSAMEG00000016671	LSM6	100	100.000	Ailuropoda_melanoleuca
ENSFALG00000005509	LSM6	92	95.000	ENSACIG00000016711	lsm6	100	95.000	Amphilophus_citrinellus
ENSFALG00000005509	LSM6	94	93.902	ENSAOCG00000002110	lsm6	53	93.902	Amphiprion_ocellaris
ENSFALG00000005509	LSM6	92	95.000	ENSAPEG00000023992	lsm6	100	95.000	Amphiprion_percula
ENSFALG00000005509	LSM6	92	95.000	ENSATEG00000012610	lsm6	100	95.000	Anabas_testudineus
ENSFALG00000005509	LSM6	89	100.000	ENSAPLG00000012594	LSM6	99	100.000	Anas_platyrhynchos
ENSFALG00000005509	LSM6	92	100.000	ENSACAG00000004004	LSM6	100	100.000	Anolis_carolinensis
ENSFALG00000005509	LSM6	92	100.000	ENSANAG00000030568	-	100	100.000	Aotus_nancymaae
ENSFALG00000005509	LSM6	92	86.250	ENSANAG00000021839	-	100	86.250	Aotus_nancymaae
ENSFALG00000005509	LSM6	92	95.000	ENSACLG00000025621	lsm6	100	95.000	Astatotilapia_calliptera
ENSFALG00000005509	LSM6	94	95.122	ENSAMXG00000038738	lsm6	100	96.250	Astyanax_mexicanus
ENSFALG00000005509	LSM6	92	100.000	ENSBTAG00000014060	LSM6	100	100.000	Bos_taurus
ENSFALG00000005509	LSM6	92	93.750	ENSBTAG00000052085	-	100	93.750	Bos_taurus
ENSFALG00000005509	LSM6	86	81.333	WBGene00003080	lsm-6	97	81.333	Caenorhabditis_elegans
ENSFALG00000005509	LSM6	92	100.000	ENSCJAG00000002482	LSM6	100	100.000	Callithrix_jacchus
ENSFALG00000005509	LSM6	92	100.000	ENSCAFG00000007738	LSM6	100	100.000	Canis_familiaris
ENSFALG00000005509	LSM6	92	100.000	ENSCAFG00020025902	LSM6	100	100.000	Canis_lupus_dingo
ENSFALG00000005509	LSM6	82	100.000	ENSCHIG00000012864	-	100	100.000	Capra_hircus
ENSFALG00000005509	LSM6	92	100.000	ENSCHIG00000010334	-	100	100.000	Capra_hircus
ENSFALG00000005509	LSM6	94	82.927	ENSCHIG00000024198	-	97	82.927	Capra_hircus
ENSFALG00000005509	LSM6	92	100.000	ENSTSYG00000026972	LSM6	100	100.000	Carlito_syrichta
ENSFALG00000005509	LSM6	86	84.000	ENSTSYG00000012759	-	89	84.000	Carlito_syrichta
ENSFALG00000005509	LSM6	75	96.923	ENSCAPG00000011179	-	100	96.923	Cavia_aperea
ENSFALG00000005509	LSM6	92	100.000	ENSCAPG00000008104	LSM6	100	100.000	Cavia_aperea
ENSFALG00000005509	LSM6	92	100.000	ENSCPOG00000032655	LSM6	100	100.000	Cavia_porcellus
ENSFALG00000005509	LSM6	91	98.734	ENSCCAG00000020665	-	99	98.734	Cebus_capucinus
ENSFALG00000005509	LSM6	92	100.000	ENSCCAG00000036437	LSM6	100	100.000	Cebus_capucinus
ENSFALG00000005509	LSM6	92	72.500	ENSCATG00000038799	-	100	72.500	Cercocebus_atys
ENSFALG00000005509	LSM6	92	100.000	ENSCATG00000002770	-	100	100.000	Cercocebus_atys
ENSFALG00000005509	LSM6	82	80.282	ENSCLAG00000005685	-	100	80.282	Chinchilla_lanigera
ENSFALG00000005509	LSM6	92	100.000	ENSCLAG00000005495	LSM6	100	100.000	Chinchilla_lanigera
ENSFALG00000005509	LSM6	92	100.000	ENSCSAG00000003421	LSM6	100	100.000	Chlorocebus_sabaeus
ENSFALG00000005509	LSM6	92	78.750	ENSCHOG00000003420	LSM6	100	78.750	Choloepus_hoffmanni
ENSFALG00000005509	LSM6	94	98.780	ENSCPBG00000027472	LSM6	86	98.780	Chrysemys_picta_bellii
ENSFALG00000005509	LSM6	87	96.053	ENSCING00000019152	-	93	96.053	Ciona_intestinalis
ENSFALG00000005509	LSM6	87	97.368	ENSCSAVG00000002065	-	93	97.368	Ciona_savignyi
ENSFALG00000005509	LSM6	92	100.000	ENSCANG00000006849	-	100	100.000	Colobus_angolensis_palliatus
ENSFALG00000005509	LSM6	92	100.000	ENSCANG00000041263	-	100	100.000	Colobus_angolensis_palliatus
ENSFALG00000005509	LSM6	92	71.250	ENSCANG00000035214	-	100	71.250	Colobus_angolensis_palliatus
ENSFALG00000005509	LSM6	92	100.000	ENSCGRG00001017142	Lsm6	100	100.000	Cricetulus_griseus_chok1gshd
ENSFALG00000005509	LSM6	92	100.000	ENSCGRG00000008320	Lsm6	100	100.000	Cricetulus_griseus_crigri
ENSFALG00000005509	LSM6	92	95.000	ENSCSEG00000000423	lsm6	100	95.000	Cynoglossus_semilaevis
ENSFALG00000005509	LSM6	92	95.000	ENSCVAG00000001592	lsm6	100	95.000	Cyprinodon_variegatus
ENSFALG00000005509	LSM6	92	96.250	ENSDARG00000036995	lsm6	100	96.250	Danio_rerio
ENSFALG00000005509	LSM6	90	90.000	ENSDNOG00000040186	-	86	90.000	Dasypus_novemcinctus
ENSFALG00000005509	LSM6	92	98.750	ENSDNOG00000044848	-	100	98.750	Dasypus_novemcinctus
ENSFALG00000005509	LSM6	92	100.000	ENSDORG00000000933	Lsm6	100	100.000	Dipodomys_ordii
ENSFALG00000005509	LSM6	89	85.714	FBgn0034564	CG9344	97	85.714	Drosophila_melanogaster
ENSFALG00000005509	LSM6	55	100.000	ENSETEG00000013098	LSM6	100	100.000	Echinops_telfairi
ENSFALG00000005509	LSM6	92	98.750	ENSEBUG00000017073	lsm6	100	98.750	Eptatretus_burgeri
ENSFALG00000005509	LSM6	79	100.000	ENSEASG00005001533	LSM6	72	100.000	Equus_asinus_asinus
ENSFALG00000005509	LSM6	92	100.000	ENSECAG00000021036	LSM6	100	100.000	Equus_caballus
ENSFALG00000005509	LSM6	91	72.152	ENSEEUG00000002101	LSM6	100	72.152	Erinaceus_europaeus
ENSFALG00000005509	LSM6	92	96.250	ENSELUG00000014301	LSM6	100	96.250	Esox_lucius
ENSFALG00000005509	LSM6	92	100.000	ENSFCAG00000003047	LSM6	100	100.000	Felis_catus
ENSFALG00000005509	LSM6	92	87.500	ENSFDAG00000019073	-	100	87.500	Fukomys_damarensis
ENSFALG00000005509	LSM6	92	100.000	ENSFDAG00000020913	-	100	100.000	Fukomys_damarensis
ENSFALG00000005509	LSM6	92	95.000	ENSFHEG00000007948	lsm6	100	95.000	Fundulus_heteroclitus
ENSFALG00000005509	LSM6	92	95.000	ENSGMOG00000015550	lsm6	100	95.000	Gadus_morhua
ENSFALG00000005509	LSM6	92	100.000	ENSGALG00000009985	LSM6	100	100.000	Gallus_gallus
ENSFALG00000005509	LSM6	92	95.000	ENSGAFG00000017763	lsm6	100	95.000	Gambusia_affinis
ENSFALG00000005509	LSM6	91	96.203	ENSGACG00000017223	lsm6	99	96.203	Gasterosteus_aculeatus
ENSFALG00000005509	LSM6	92	100.000	ENSGAGG00000020980	LSM6	100	100.000	Gopherus_agassizii
ENSFALG00000005509	LSM6	92	100.000	ENSGGOG00000001310	LSM6	100	100.000	Gorilla_gorilla
ENSFALG00000005509	LSM6	92	95.000	ENSHBUG00000008618	lsm6	100	95.000	Haplochromis_burtoni
ENSFALG00000005509	LSM6	92	100.000	ENSHGLG00000000205	LSM6	100	100.000	Heterocephalus_glaber_female
ENSFALG00000005509	LSM6	92	100.000	ENSHGLG00100014341	LSM6	100	100.000	Heterocephalus_glaber_male
ENSFALG00000005509	LSM6	92	95.000	ENSHCOG00000005591	lsm6	100	95.000	Hippocampus_comes
ENSFALG00000005509	LSM6	92	95.000	ENSIPUG00000004508	lsm6	100	95.000	Ictalurus_punctatus
ENSFALG00000005509	LSM6	92	100.000	ENSSTOG00000002678	LSM6	100	100.000	Ictidomys_tridecemlineatus
ENSFALG00000005509	LSM6	92	100.000	ENSJJAG00000013845	-	100	100.000	Jaculus_jaculus
ENSFALG00000005509	LSM6	89	79.221	ENSJJAG00000016942	-	97	79.221	Jaculus_jaculus
ENSFALG00000005509	LSM6	92	90.000	ENSJJAG00000011211	-	100	90.000	Jaculus_jaculus
ENSFALG00000005509	LSM6	92	95.000	ENSKMAG00000004105	lsm6	100	95.000	Kryptolebias_marmoratus
ENSFALG00000005509	LSM6	92	95.000	ENSLBEG00000018441	lsm6	100	95.000	Labrus_bergylta
ENSFALG00000005509	LSM6	92	100.000	ENSLACG00000006937	LSM6	100	100.000	Latimeria_chalumnae
ENSFALG00000005509	LSM6	92	95.000	ENSLOCG00000017683	-	100	95.000	Lepisosteus_oculatus
ENSFALG00000005509	LSM6	92	96.250	ENSLOCG00000008852	lsm6	100	96.250	Lepisosteus_oculatus
ENSFALG00000005509	LSM6	92	100.000	ENSLAFG00000001952	LSM6	100	100.000	Loxodonta_africana
ENSFALG00000005509	LSM6	92	100.000	ENSMFAG00000033073	LSM6	100	100.000	Macaca_fascicularis
ENSFALG00000005509	LSM6	92	73.750	ENSMNEG00000040412	-	100	73.750	Macaca_nemestrina
ENSFALG00000005509	LSM6	92	100.000	ENSMNEG00000034820	-	100	100.000	Macaca_nemestrina
ENSFALG00000005509	LSM6	92	100.000	ENSMLEG00000035153	LSM6	100	100.000	Mandrillus_leucophaeus
ENSFALG00000005509	LSM6	92	95.000	ENSMAMG00000014029	lsm6	100	95.000	Mastacembelus_armatus
ENSFALG00000005509	LSM6	92	95.000	ENSMZEG00005009146	lsm6	100	95.000	Maylandia_zebra
ENSFALG00000005509	LSM6	92	100.000	ENSMGAG00000003802	LSM6	100	100.000	Meleagris_gallopavo
ENSFALG00000005509	LSM6	92	100.000	ENSMAUG00000014938	Lsm6	100	100.000	Mesocricetus_auratus
ENSFALG00000005509	LSM6	90	91.026	ENSMICG00000047411	-	92	91.026	Microcebus_murinus
ENSFALG00000005509	LSM6	92	100.000	ENSMICG00000042599	LSM6	100	100.000	Microcebus_murinus
ENSFALG00000005509	LSM6	92	100.000	ENSMOCG00000020049	Lsm6	100	100.000	Microtus_ochrogaster
ENSFALG00000005509	LSM6	92	88.750	ENSMMOG00000007379	-	100	88.750	Mola_mola
ENSFALG00000005509	LSM6	92	95.000	ENSMMOG00000005470	lsm6	100	95.000	Mola_mola
ENSFALG00000005509	LSM6	92	100.000	ENSMODG00000000526	LSM6	100	100.000	Monodelphis_domestica
ENSFALG00000005509	LSM6	92	95.000	ENSMALG00000002419	lsm6	100	95.000	Monopterus_albus
ENSFALG00000005509	LSM6	92	100.000	MGP_CAROLIEiJ_G0031245	Lsm6	100	100.000	Mus_caroli
ENSFALG00000005509	LSM6	92	100.000	ENSMUSG00000031683	Lsm6	100	100.000	Mus_musculus
ENSFALG00000005509	LSM6	92	100.000	MGP_PahariEiJ_G0022851	Lsm6	100	100.000	Mus_pahari
ENSFALG00000005509	LSM6	92	100.000	MGP_SPRETEiJ_G0032365	Lsm6	100	100.000	Mus_spretus
ENSFALG00000005509	LSM6	93	98.765	ENSMPUG00000006936	LSM6	94	98.765	Mustela_putorius_furo
ENSFALG00000005509	LSM6	92	100.000	ENSMLUG00000026355	LSM6	100	100.000	Myotis_lucifugus
ENSFALG00000005509	LSM6	92	100.000	ENSNGAG00000019116	Lsm6	100	100.000	Nannospalax_galili
ENSFALG00000005509	LSM6	92	95.000	ENSNBRG00000004887	lsm6	100	95.000	Neolamprologus_brichardi
ENSFALG00000005509	LSM6	92	100.000	ENSNLEG00000005584	LSM6	100	100.000	Nomascus_leucogenys
ENSFALG00000005509	LSM6	92	98.750	ENSOPRG00000011199	LSM6	100	98.750	Ochotona_princeps
ENSFALG00000005509	LSM6	92	96.250	ENSODEG00000019419	-	100	96.250	Octodon_degus
ENSFALG00000005509	LSM6	92	97.500	ENSODEG00000020420	-	100	97.500	Octodon_degus
ENSFALG00000005509	LSM6	89	88.312	ENSODEG00000018684	-	100	88.312	Octodon_degus
ENSFALG00000005509	LSM6	92	98.750	ENSODEG00000002307	-	100	98.750	Octodon_degus
ENSFALG00000005509	LSM6	92	95.000	ENSONIG00000010005	lsm6	100	95.000	Oreochromis_niloticus
ENSFALG00000005509	LSM6	90	74.359	ENSOANG00000006895	-	100	74.359	Ornithorhynchus_anatinus
ENSFALG00000005509	LSM6	90	74.359	ENSOANG00000006894	-	100	74.359	Ornithorhynchus_anatinus
ENSFALG00000005509	LSM6	92	93.750	ENSORLG00000024158	lsm6	100	93.750	Oryzias_latipes
ENSFALG00000005509	LSM6	92	93.750	ENSORLG00020017383	lsm6	100	93.750	Oryzias_latipes_hni
ENSFALG00000005509	LSM6	92	93.750	ENSORLG00015016903	lsm6	100	93.750	Oryzias_latipes_hsok
ENSFALG00000005509	LSM6	92	95.000	ENSOMEG00000000074	lsm6	100	95.000	Oryzias_melastigma
ENSFALG00000005509	LSM6	92	100.000	ENSOGAG00000026665	-	100	100.000	Otolemur_garnettii
ENSFALG00000005509	LSM6	92	100.000	ENSOGAG00000033153	-	100	100.000	Otolemur_garnettii
ENSFALG00000005509	LSM6	79	100.000	ENSOARG00000008509	-	88	100.000	Ovis_aries
ENSFALG00000005509	LSM6	93	92.593	ENSOARG00000011641	-	94	92.593	Ovis_aries
ENSFALG00000005509	LSM6	92	100.000	ENSPPAG00000037929	LSM6	100	100.000	Pan_paniscus
ENSFALG00000005509	LSM6	92	100.000	ENSPPRG00000012806	LSM6	100	100.000	Panthera_pardus
ENSFALG00000005509	LSM6	92	100.000	ENSPTIG00000019769	LSM6	100	100.000	Panthera_tigris_altaica
ENSFALG00000005509	LSM6	92	100.000	ENSPTRG00000016488	LSM6	100	100.000	Pan_troglodytes
ENSFALG00000005509	LSM6	92	100.000	ENSPANG00000006552	LSM6	100	100.000	Papio_anubis
ENSFALG00000005509	LSM6	92	96.250	ENSPKIG00000016176	lsm6	100	96.250	Paramormyrops_kingsleyae
ENSFALG00000005509	LSM6	92	100.000	ENSPSIG00000016942	LSM6	100	100.000	Pelodiscus_sinensis
ENSFALG00000005509	LSM6	92	95.000	ENSPMGG00000018004	lsm6	100	95.000	Periophthalmus_magnuspinnatus
ENSFALG00000005509	LSM6	92	100.000	ENSPEMG00000012410	Lsm6	100	100.000	Peromyscus_maniculatus_bairdii
ENSFALG00000005509	LSM6	92	98.750	ENSPMAG00000006949	lsm6	100	98.750	Petromyzon_marinus
ENSFALG00000005509	LSM6	100	94.253	ENSPCIG00000023469	LSM6	80	100.000	Phascolarctos_cinereus
ENSFALG00000005509	LSM6	92	95.000	ENSPFOG00000008881	lsm6	100	95.000	Poecilia_formosa
ENSFALG00000005509	LSM6	92	95.000	ENSPLAG00000003202	lsm6	100	95.000	Poecilia_latipinna
ENSFALG00000005509	LSM6	92	95.000	ENSPMEG00000004000	lsm6	100	95.000	Poecilia_mexicana
ENSFALG00000005509	LSM6	92	95.000	ENSPREG00000023235	lsm6	100	95.000	Poecilia_reticulata
ENSFALG00000005509	LSM6	92	100.000	ENSPPYG00000015105	LSM6	100	100.000	Pongo_abelii
ENSFALG00000005509	LSM6	92	100.000	ENSPCOG00000013899	LSM6	100	100.000	Propithecus_coquereli
ENSFALG00000005509	LSM6	92	95.000	ENSPNYG00000012614	lsm6	100	95.000	Pundamilia_nyererei
ENSFALG00000005509	LSM6	92	96.250	ENSPNAG00000018779	lsm6	100	96.250	Pygocentrus_nattereri
ENSFALG00000005509	LSM6	92	100.000	ENSRNOG00000030374	Lsm6	100	100.000	Rattus_norvegicus
ENSFALG00000005509	LSM6	92	100.000	ENSRNOG00000049370	LOC100360750	100	100.000	Rattus_norvegicus
ENSFALG00000005509	LSM6	92	100.000	ENSRBIG00000027878	LSM6	100	100.000	Rhinopithecus_bieti
ENSFALG00000005509	LSM6	92	100.000	ENSRROG00000024868	LSM6	100	100.000	Rhinopithecus_roxellana
ENSFALG00000005509	LSM6	90	41.463	YDR378C	-	95	45.122	Saccharomyces_cerevisiae
ENSFALG00000005509	LSM6	92	73.750	ENSSBOG00000028103	-	100	73.750	Saimiri_boliviensis_boliviensis
ENSFALG00000005509	LSM6	92	100.000	ENSSBOG00000021229	-	100	100.000	Saimiri_boliviensis_boliviensis
ENSFALG00000005509	LSM6	92	96.250	ENSSFOG00015016480	lsm6	100	96.250	Scleropages_formosus
ENSFALG00000005509	LSM6	92	95.000	ENSSMAG00000004550	lsm6	100	95.000	Scophthalmus_maximus
ENSFALG00000005509	LSM6	94	93.902	ENSSDUG00000020459	lsm6	51	93.902	Seriola_dumerili
ENSFALG00000005509	LSM6	94	93.902	ENSSLDG00000020533	lsm6	85	93.902	Seriola_lalandi_dorsalis
ENSFALG00000005509	LSM6	79	97.101	ENSSLDG00000004136	-	59	97.101	Seriola_lalandi_dorsalis
ENSFALG00000005509	LSM6	55	100.000	ENSSARG00000000689	LSM6	100	100.000	Sorex_araneus
ENSFALG00000005509	LSM6	92	100.000	ENSSPUG00000008657	LSM6	100	100.000	Sphenodon_punctatus
ENSFALG00000005509	LSM6	92	95.000	ENSSPAG00000003246	lsm6	100	95.000	Stegastes_partitus
ENSFALG00000005509	LSM6	92	100.000	ENSSSCG00000035973	LSM6	100	100.000	Sus_scrofa
ENSFALG00000005509	LSM6	92	100.000	ENSTGUG00000002663	LSM6	100	100.000	Taeniopygia_guttata
ENSFALG00000005509	LSM6	92	95.000	ENSTRUG00000023398	lsm6	100	95.000	Takifugu_rubripes
ENSFALG00000005509	LSM6	92	95.000	ENSTNIG00000017725	lsm6	100	95.000	Tetraodon_nigroviridis
ENSFALG00000005509	LSM6	92	100.000	ENSTTRG00000004609	LSM6	100	100.000	Tursiops_truncatus
ENSFALG00000005509	LSM6	90	91.026	ENSUAMG00000014213	LSM6	64	91.026	Ursus_americanus
ENSFALG00000005509	LSM6	90	91.026	ENSUMAG00000015727	LSM6	64	91.026	Ursus_maritimus
ENSFALG00000005509	LSM6	92	100.000	ENSVPAG00000006922	LSM6	100	100.000	Vicugna_pacos
ENSFALG00000005509	LSM6	94	98.780	ENSVVUG00000009254	LSM6	70	98.780	Vulpes_vulpes
ENSFALG00000005509	LSM6	92	100.000	ENSXETG00000023683	lsm6	100	100.000	Xenopus_tropicalis
ENSFALG00000005509	LSM6	92	95.000	ENSXMAG00000009606	lsm6	100	95.000	Xiphophorus_maculatus