EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFALG00000006538 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 105485 bases
Position: chrJH603226.1:4902642-5008126
Accession: 101820889
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000006818	EST1	PF10374.9	2.7e-16	1	1
ENSFALP00000006818	EST1_DNA_bind	PF10373.9	5.3e-59	1	1
ENSFALP00000006818	PIN_4	PF13638.6	8.5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000006847	SMG6-201	6078	XM_005056800	ENSFALP00000006818	1386 (aa)	XP_005056857	U3JVL4

Gene Model

Click here to download ENSFALG00000006538's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000006538's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000006538	SMG6	100	71.744	ENSG00000070366	SMG6	100	83.366	Homo_sapiens
ENSFALG00000006538	SMG6	90	52.972	ENSAPOG00000019448	smg6	79	53.585	Acanthochromis_polyacanthus
ENSFALG00000006538	SMG6	100	72.740	ENSAMEG00000007632	SMG6	98	72.669	Ailuropoda_melanoleuca
ENSFALG00000006538	SMG6	74	59.381	ENSACIG00000012997	smg6	83	54.157	Amphilophus_citrinellus
ENSFALG00000006538	SMG6	90	53.150	ENSAOCG00000002630	smg6	79	54.096	Amphiprion_ocellaris
ENSFALG00000006538	SMG6	88	53.782	ENSAPEG00000019101	smg6	78	54.443	Amphiprion_percula
ENSFALG00000006538	SMG6	88	53.910	ENSATEG00000006483	smg6	77	54.211	Anabas_testudineus
ENSFALG00000006538	SMG6	86	61.382	ENSACAG00000011783	SMG6	97	61.851	Anolis_carolinensis
ENSFALG00000006538	SMG6	100	72.028	ENSANAG00000035760	SMG6	98	71.886	Aotus_nancymaae
ENSFALG00000006538	SMG6	73	59.099	ENSACLG00000005288	smg6	83	53.649	Astatotilapia_calliptera
ENSFALG00000006538	SMG6	74	61.597	ENSAMXG00000017326	smg6	98	50.736	Astyanax_mexicanus
ENSFALG00000006538	SMG6	99	73.058	ENSBTAG00000000267	SMG6	98	72.986	Bos_taurus
ENSFALG00000006538	SMG6	100	71.510	ENSCJAG00000001820	SMG6	98	71.439	Callithrix_jacchus
ENSFALG00000006538	SMG6	99	72.753	ENSCAFG00000019260	SMG6	98	72.682	Canis_familiaris
ENSFALG00000006538	SMG6	99	72.753	ENSCAFG00020009770	SMG6	98	72.682	Canis_lupus_dingo
ENSFALG00000006538	SMG6	99	72.773	ENSCHIG00000021998	SMG6	98	72.701	Capra_hircus
ENSFALG00000006538	SMG6	100	71.286	ENSTSYG00000003406	SMG6	100	83.170	Carlito_syrichta
ENSFALG00000006538	SMG6	91	73.902	ENSCAPG00000016197	SMG6	98	73.902	Cavia_aperea
ENSFALG00000006538	SMG6	100	70.993	ENSCPOG00000014878	SMG6	98	79.654	Cavia_porcellus
ENSFALG00000006538	SMG6	100	72.179	ENSCCAG00000035801	SMG6	98	72.108	Cebus_capucinus
ENSFALG00000006538	SMG6	100	71.673	ENSCATG00000031956	SMG6	98	71.601	Cercocebus_atys
ENSFALG00000006538	SMG6	100	72.281	ENSCLAG00000006748	SMG6	98	79.661	Chinchilla_lanigera
ENSFALG00000006538	SMG6	100	71.886	ENSCSAG00000013800	SMG6	98	71.815	Chlorocebus_sabaeus
ENSFALG00000006538	SMG6	100	83.202	ENSCPBG00000020369	SMG6	98	82.843	Chrysemys_picta_bellii
ENSFALG00000006538	SMG6	100	71.673	ENSCANG00000031764	SMG6	100	83.170	Colobus_angolensis_palliatus
ENSFALG00000006538	SMG6	54	61.619	ENSCGRG00001019595	Smg6	96	76.667	Cricetulus_griseus_chok1gshd
ENSFALG00000006538	SMG6	100	66.001	ENSCGRG00000007782	Smg6	100	65.788	Cricetulus_griseus_crigri
ENSFALG00000006538	SMG6	84	55.715	ENSCSEG00000012757	smg6	78	55.887	Cynoglossus_semilaevis
ENSFALG00000006538	SMG6	89	51.849	ENSCVAG00000012789	smg6	79	52.580	Cyprinodon_variegatus
ENSFALG00000006538	SMG6	100	71.713	ENSDNOG00000048283	SMG6	98	71.642	Dasypus_novemcinctus
ENSFALG00000006538	SMG6	100	68.249	ENSDORG00000016614	Smg6	94	83.333	Dipodomys_ordii
ENSFALG00000006538	SMG6	93	90.476	ENSETEG00000016790	SMG6	91	90.476	Echinops_telfairi
ENSFALG00000006538	SMG6	66	51.411	ENSEBUG00000005059	smg6	68	48.887	Eptatretus_burgeri
ENSFALG00000006538	SMG6	99	73.071	ENSEASG00005009318	SMG6	97	73.000	Equus_asinus_asinus
ENSFALG00000006538	SMG6	99	72.929	ENSECAG00000006519	SMG6	97	72.857	Equus_caballus
ENSFALG00000006538	SMG6	99	62.625	ENSEEUG00000003493	SMG6	98	62.767	Erinaceus_europaeus
ENSFALG00000006538	SMG6	73	61.055	ENSELUG00000005934	smg6	70	55.640	Esox_lucius
ENSFALG00000006538	SMG6	99	73.096	ENSFCAG00000028817	SMG6	98	73.025	Felis_catus
ENSFALG00000006538	SMG6	100	71.571	ENSFDAG00000015106	SMG6	100	76.327	Fukomys_damarensis
ENSFALG00000006538	SMG6	88	52.254	ENSFHEG00000013282	smg6	77	52.941	Fundulus_heteroclitus
ENSFALG00000006538	SMG6	63	67.453	ENSGMOG00000019077	smg6	67	67.453	Gadus_morhua
ENSFALG00000006538	SMG6	100	89.383	ENSGALG00000003108	SMG6	96	89.462	Gallus_gallus
ENSFALG00000006538	SMG6	88	53.175	ENSGAFG00000000379	smg6	76	53.328	Gambusia_affinis
ENSFALG00000006538	SMG6	92	54.628	ENSGACG00000020521	smg6	99	54.382	Gasterosteus_aculeatus
ENSFALG00000006538	SMG6	100	82.915	ENSGAGG00000025617	SMG6	100	82.556	Gopherus_agassizii
ENSFALG00000006538	SMG6	100	71.957	ENSGGOG00000017156	SMG6	98	71.886	Gorilla_gorilla
ENSFALG00000006538	SMG6	89	52.054	ENSHBUG00000021311	smg6	78	53.662	Haplochromis_burtoni
ENSFALG00000006538	SMG6	100	71.256	ENSHGLG00000012882	SMG6	94	82.063	Heterocephalus_glaber_female
ENSFALG00000006538	SMG6	100	71.327	ENSHGLG00100017815	SMG6	94	82.063	Heterocephalus_glaber_male
ENSFALG00000006538	SMG6	73	58.071	ENSHCOG00000008761	smg6	83	57.945	Hippocampus_comes
ENSFALG00000006538	SMG6	84	56.472	ENSIPUG00000012493	smg6	75	56.518	Ictalurus_punctatus
ENSFALG00000006538	SMG6	100	72.566	ENSSTOG00000028127	SMG6	94	83.408	Ictidomys_tridecemlineatus
ENSFALG00000006538	SMG6	78	66.245	ENSJJAG00000015367	Smg6	93	64.732	Jaculus_jaculus
ENSFALG00000006538	SMG6	88	52.990	ENSKMAG00000000279	smg6	78	53.509	Kryptolebias_marmoratus
ENSFALG00000006538	SMG6	86	53.704	ENSLBEG00000002184	smg6	77	53.569	Labrus_bergylta
ENSFALG00000006538	SMG6	56	56.777	ENSLACG00000000806	-	98	56.448	Latimeria_chalumnae
ENSFALG00000006538	SMG6	74	66.103	ENSLOCG00000006448	smg6	99	55.817	Lepisosteus_oculatus
ENSFALG00000006538	SMG6	100	70.972	ENSLAFG00000001261	SMG6	98	70.901	Loxodonta_africana
ENSFALG00000006538	SMG6	100	71.886	ENSMFAG00000003394	SMG6	98	71.815	Macaca_fascicularis
ENSFALG00000006538	SMG6	100	71.744	ENSMMUG00000023161	SMG6	98	71.673	Macaca_mulatta
ENSFALG00000006538	SMG6	100	68.421	ENSMNEG00000044592	SMG6	98	68.350	Macaca_nemestrina
ENSFALG00000006538	SMG6	95	83.835	ENSMLEG00000029353	SMG6	99	83.835	Mandrillus_leucophaeus
ENSFALG00000006538	SMG6	90	53.227	ENSMAMG00000020119	smg6	85	54.121	Mastacembelus_armatus
ENSFALG00000006538	SMG6	73	59.137	ENSMZEG00005024736	smg6	77	53.881	Maylandia_zebra
ENSFALG00000006538	SMG6	74	85.340	ENSMGAG00000005401	-	97	85.340	Meleagris_gallopavo
ENSFALG00000006538	SMG6	100	72.553	ENSMICG00000012913	SMG6	98	72.482	Microcebus_murinus
ENSFALG00000006538	SMG6	89	54.231	ENSMMOG00000010883	smg6	90	50.375	Mola_mola
ENSFALG00000006538	SMG6	100	72.863	ENSMODG00000010622	SMG6	98	72.721	Monodelphis_domestica
ENSFALG00000006538	SMG6	88	53.916	ENSMALG00000001106	smg6	77	54.211	Monopterus_albus
ENSFALG00000006538	SMG6	100	71.724	MGP_CAROLIEiJ_G0016729	Smg6	98	81.268	Mus_caroli
ENSFALG00000006538	SMG6	100	71.652	ENSMUSG00000038290	Smg6	97	81.556	Mus_musculus
ENSFALG00000006538	SMG6	100	70.940	MGP_PahariEiJ_G0017866	Smg6	98	80.403	Mus_pahari
ENSFALG00000006538	SMG6	100	71.724	MGP_SPRETEiJ_G0017572	Smg6	98	81.556	Mus_spretus
ENSFALG00000006538	SMG6	99	73.110	ENSMPUG00000013046	SMG6	98	72.967	Mustela_putorius_furo
ENSFALG00000006538	SMG6	99	72.480	ENSMLUG00000005739	SMG6	98	72.409	Myotis_lucifugus
ENSFALG00000006538	SMG6	100	71.083	ENSNGAG00000007287	Smg6	94	81.614	Nannospalax_galili
ENSFALG00000006538	SMG6	89	53.113	ENSNBRG00000009511	smg6	84	52.553	Neolamprologus_brichardi
ENSFALG00000006538	SMG6	100	71.744	ENSNLEG00000017171	SMG6	100	83.366	Nomascus_leucogenys
ENSFALG00000006538	SMG6	100	70.949	ENSMEUG00000015804	SMG6	99	70.685	Notamacropus_eugenii
ENSFALG00000006538	SMG6	63	76.364	ENSOPRG00000000579	SMG6	91	76.364	Ochotona_princeps
ENSFALG00000006538	SMG6	100	64.610	ENSODEG00000008038	SMG6	98	64.443	Octodon_degus
ENSFALG00000006538	SMG6	99	50.821	ENSONIG00000005594	smg6	97	51.544	Oreochromis_niloticus
ENSFALG00000006538	SMG6	100	71.530	ENSOCUG00000013018	SMG6	98	71.459	Oryctolagus_cuniculus
ENSFALG00000006538	SMG6	88	53.075	ENSORLG00000003317	smg6	77	52.901	Oryzias_latipes
ENSFALG00000006538	SMG6	88	53.175	ENSORLG00020015343	smg6	77	52.640	Oryzias_latipes_hni
ENSFALG00000006538	SMG6	88	53.166	ENSORLG00015020454	smg6	77	52.990	Oryzias_latipes_hsok
ENSFALG00000006538	SMG6	90	51.896	ENSOMEG00000010838	smg6	83	50.742	Oryzias_melastigma
ENSFALG00000006538	SMG6	100	72.088	ENSOGAG00000004483	SMG6	98	72.017	Otolemur_garnettii
ENSFALG00000006538	SMG6	100	72.546	ENSOARG00000015076	SMG6	100	72.630	Ovis_aries
ENSFALG00000006538	SMG6	100	71.713	ENSPPAG00000043296	SMG6	98	71.642	Pan_paniscus
ENSFALG00000006538	SMG6	99	73.025	ENSPPRG00000014581	SMG6	98	72.954	Panthera_pardus
ENSFALG00000006538	SMG6	99	73.025	ENSPTIG00000008925	SMG6	100	84.149	Panthera_tigris_altaica
ENSFALG00000006538	SMG6	100	71.815	ENSPTRG00000008544	SMG6	100	83.366	Pan_troglodytes
ENSFALG00000006538	SMG6	100	71.764	ENSPANG00000024588	SMG6	98	71.693	Papio_anubis
ENSFALG00000006538	SMG6	90	80.412	ENSPSIG00000006660	SMG6	96	80.095	Pelodiscus_sinensis
ENSFALG00000006538	SMG6	94	61.200	ENSPMGG00000000844	smg6	89	62.092	Periophthalmus_magnuspinnatus
ENSFALG00000006538	SMG6	100	71.775	ENSPEMG00000020707	Smg6	98	79.913	Peromyscus_maniculatus_bairdii
ENSFALG00000006538	SMG6	99	51.270	ENSPFOG00000012035	smg6	98	51.444	Poecilia_formosa
ENSFALG00000006538	SMG6	88	53.232	ENSPLAG00000017660	smg6	83	51.309	Poecilia_latipinna
ENSFALG00000006538	SMG6	88	53.834	ENSPMEG00000000258	smg6	83	51.634	Poecilia_mexicana
ENSFALG00000006538	SMG6	88	53.405	ENSPREG00000010066	smg6	83	51.108	Poecilia_reticulata
ENSFALG00000006538	SMG6	100	66.856	ENSPPYG00000007790	SMG6	98	66.785	Pongo_abelii
ENSFALG00000006538	SMG6	100	69.181	ENSPCAG00000000552	SMG6	98	69.110	Procavia_capensis
ENSFALG00000006538	SMG6	100	71.997	ENSPCOG00000020925	SMG6	98	71.926	Propithecus_coquereli
ENSFALG00000006538	SMG6	84	74.240	ENSPVAG00000002159	SMG6	83	74.177	Pteropus_vampyrus
ENSFALG00000006538	SMG6	89	53.205	ENSPNYG00000024151	smg6	83	54.637	Pundamilia_nyererei
ENSFALG00000006538	SMG6	81	62.007	ENSPNAG00000015480	smg6	87	62.007	Pygocentrus_nattereri
ENSFALG00000006538	SMG6	100	71.154	ENSRNOG00000003041	Smg6	97	81.556	Rattus_norvegicus
ENSFALG00000006538	SMG6	100	71.744	ENSRBIG00000024746	SMG6	98	71.673	Rhinopithecus_bieti
ENSFALG00000006538	SMG6	100	71.673	ENSRROG00000030423	SMG6	100	82.975	Rhinopithecus_roxellana
ENSFALG00000006538	SMG6	100	72.210	ENSSBOG00000022518	SMG6	98	70.747	Saimiri_boliviensis_boliviensis
ENSFALG00000006538	SMG6	100	72.954	ENSSHAG00000010045	SMG6	98	72.740	Sarcophilus_harrisii
ENSFALG00000006538	SMG6	88	54.741	ENSSFOG00015005436	smg6	75	55.729	Scleropages_formosus
ENSFALG00000006538	SMG6	89	52.880	ENSSMAG00000019777	smg6	76	52.880	Scophthalmus_maximus
ENSFALG00000006538	SMG6	73	60.146	ENSSDUG00000016412	smg6	74	55.678	Seriola_dumerili
ENSFALG00000006538	SMG6	81	54.702	ENSSLDG00000020747	smg6	77	54.776	Seriola_lalandi_dorsalis
ENSFALG00000006538	SMG6	99	76.862	ENSSPUG00000007152	SMG6	98	76.648	Sphenodon_punctatus
ENSFALG00000006538	SMG6	86	54.667	ENSSPAG00000015633	smg6	78	54.346	Stegastes_partitus
ENSFALG00000006538	SMG6	99	72.598	ENSSSCG00000017826	SMG6	98	72.527	Sus_scrofa
ENSFALG00000006538	SMG6	100	93.885	ENSTGUG00000005836	SMG6	98	93.885	Taeniopygia_guttata
ENSFALG00000006538	SMG6	99	50.883	ENSTRUG00000000358	smg6	94	50.577	Takifugu_rubripes
ENSFALG00000006538	SMG6	92	52.196	ENSTNIG00000016164	smg6	90	52.524	Tetraodon_nigroviridis
ENSFALG00000006538	SMG6	100	68.643	ENSTBEG00000011424	SMG6	98	68.571	Tupaia_belangeri
ENSFALG00000006538	SMG6	90	78.788	ENSTTRG00000001175	SMG6	89	78.788	Tursiops_truncatus
ENSFALG00000006538	SMG6	99	72.669	ENSUAMG00000025152	SMG6	100	72.598	Ursus_americanus
ENSFALG00000006538	SMG6	99	72.896	ENSUMAG00000009306	SMG6	100	72.825	Ursus_maritimus
ENSFALG00000006538	SMG6	84	92.593	ENSVPAG00000000225	SMG6	85	92.593	Vicugna_pacos
ENSFALG00000006538	SMG6	99	72.611	ENSVVUG00000021727	SMG6	99	72.086	Vulpes_vulpes
ENSFALG00000006538	SMG6	100	58.840	ENSXETG00000023799	SMG6	99	58.526	Xenopus_tropicalis
ENSFALG00000006538	SMG6	88	53.756	ENSXCOG00000009867	smg6	77	53.834	Xiphophorus_couchianus
ENSFALG00000006538	SMG6	88	53.645	ENSXMAG00000010321	smg6	81	51.242	Xiphophorus_maculatus