EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFALG00000006723 (Gene tree)
Gene ID: -
Gene Symbol: LSM1
Alias: CASM|YJL124C
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 2903 bases
Position: chrJH603327.1:639512-642414
Accession: 20472
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000007012	LSM	PF01423.22	1.9e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000007043	LSM1-201	1643	-	ENSFALP00000007012	118 (aa)	-	U3JW58

Gene Model

Click here to download ENSFALG00000006723's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000006723's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFALG00000006723	LSM1	63	36.000	ENSFALG00000010023	LSM8	78	36.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000006723	LSM1	100	94.915	ENSG00000175324	LSM1	89	94.915	Homo_sapiens
ENSFALG00000006723	LSM1	100	83.898	ENSAPOG00000010833	lsm1	89	83.051	Acanthochromis_polyacanthus
ENSFALG00000006723	LSM1	100	94.915	ENSAMEG00000011141	LSM1	89	94.915	Ailuropoda_melanoleuca
ENSFALG00000006723	LSM1	53	91.935	ENSACIG00000019593	lsm1	52	91.935	Amphilophus_citrinellus
ENSFALG00000006723	LSM1	100	83.051	ENSAOCG00000017997	-	89	83.051	Amphiprion_ocellaris
ENSFALG00000006723	LSM1	100	83.051	ENSAOCG00000017096	lsm1	89	83.051	Amphiprion_ocellaris
ENSFALG00000006723	LSM1	100	83.051	ENSAPEG00000011669	lsm1	89	83.051	Amphiprion_percula
ENSFALG00000006723	LSM1	100	83.051	ENSATEG00000022266	lsm1	89	83.051	Anabas_testudineus
ENSFALG00000006723	LSM1	100	94.915	ENSANAG00000027785	LSM1	89	94.915	Aotus_nancymaae
ENSFALG00000006723	LSM1	100	83.051	ENSACLG00000011400	lsm1	89	83.051	Astatotilapia_calliptera
ENSFALG00000006723	LSM1	100	86.441	ENSAMXG00000005441	lsm1	89	86.441	Astyanax_mexicanus
ENSFALG00000006723	LSM1	100	94.068	ENSBTAG00000001612	LSM1	89	94.068	Bos_taurus
ENSFALG00000006723	LSM1	86	52.885	WBGene00003076	lsm-1	79	52.885	Caenorhabditis_elegans
ENSFALG00000006723	LSM1	100	94.068	ENSCJAG00000048015	LSM1	89	94.068	Callithrix_jacchus
ENSFALG00000006723	LSM1	100	94.915	ENSCAFG00000006113	LSM1	89	94.915	Canis_familiaris
ENSFALG00000006723	LSM1	100	94.915	ENSCAFG00020001822	LSM1	89	94.915	Canis_lupus_dingo
ENSFALG00000006723	LSM1	100	94.915	ENSCHIG00000013194	LSM1	89	94.915	Capra_hircus
ENSFALG00000006723	LSM1	100	94.915	ENSTSYG00000010394	LSM1	89	94.915	Carlito_syrichta
ENSFALG00000006723	LSM1	100	94.915	ENSCPOG00000032671	LSM1	89	94.915	Cavia_porcellus
ENSFALG00000006723	LSM1	100	94.915	ENSCCAG00000037171	LSM1	89	94.915	Cebus_capucinus
ENSFALG00000006723	LSM1	100	94.915	ENSCATG00000020377	LSM1	89	94.915	Cercocebus_atys
ENSFALG00000006723	LSM1	100	93.220	ENSCLAG00000001137	LSM1	89	93.220	Chinchilla_lanigera
ENSFALG00000006723	LSM1	100	94.915	ENSCSAG00000015485	LSM1	89	94.915	Chlorocebus_sabaeus
ENSFALG00000006723	LSM1	100	95.763	ENSCHOG00000006030	LSM1	89	95.763	Choloepus_hoffmanni
ENSFALG00000006723	LSM1	100	98.305	ENSCPBG00000006569	LSM1	80	98.305	Chrysemys_picta_bellii
ENSFALG00000006723	LSM1	99	64.957	ENSCING00000013536	-	89	64.957	Ciona_intestinalis
ENSFALG00000006723	LSM1	100	94.915	ENSCANG00000019173	LSM1	89	94.915	Colobus_angolensis_palliatus
ENSFALG00000006723	LSM1	83	78.641	ENSCGRG00001002259	-	90	78.641	Cricetulus_griseus_chok1gshd
ENSFALG00000006723	LSM1	100	94.068	ENSCGRG00001024560	-	89	94.068	Cricetulus_griseus_chok1gshd
ENSFALG00000006723	LSM1	83	78.641	ENSCGRG00000013603	-	90	78.641	Cricetulus_griseus_crigri
ENSFALG00000006723	LSM1	100	94.068	ENSCGRG00000006554	-	89	94.068	Cricetulus_griseus_crigri
ENSFALG00000006723	LSM1	100	83.898	ENSCSEG00000010570	lsm1	81	83.898	Cynoglossus_semilaevis
ENSFALG00000006723	LSM1	100	83.898	ENSCSEG00000008319	lsm1	81	83.898	Cynoglossus_semilaevis
ENSFALG00000006723	LSM1	100	82.203	ENSCVAG00000003871	lsm1	89	82.203	Cyprinodon_variegatus
ENSFALG00000006723	LSM1	100	85.593	ENSDARG00000043177	lsm1	89	85.593	Danio_rerio
ENSFALG00000006723	LSM1	100	94.915	ENSDNOG00000046387	-	89	94.915	Dasypus_novemcinctus
ENSFALG00000006723	LSM1	86	77.451	ENSDNOG00000046620	-	86	77.451	Dasypus_novemcinctus
ENSFALG00000006723	LSM1	100	88.136	ENSDNOG00000030989	-	88	88.136	Dasypus_novemcinctus
ENSFALG00000006723	LSM1	100	94.915	ENSDNOG00000032911	-	89	94.915	Dasypus_novemcinctus
ENSFALG00000006723	LSM1	100	94.915	ENSDORG00000028172	Lsm1	89	94.915	Dipodomys_ordii
ENSFALG00000006723	LSM1	92	67.890	FBgn0261067	LSm1	80	67.890	Drosophila_melanogaster
ENSFALG00000006723	LSM1	100	94.068	ENSEASG00005016677	LSM1	89	94.068	Equus_asinus_asinus
ENSFALG00000006723	LSM1	100	94.068	ENSECAG00000010461	LSM1	89	94.068	Equus_caballus
ENSFALG00000006723	LSM1	100	64.407	ENSEEUG00000015181	LSM1	85	64.407	Erinaceus_europaeus
ENSFALG00000006723	LSM1	100	79.661	ENSELUG00000023374	lsm1	89	79.661	Esox_lucius
ENSFALG00000006723	LSM1	100	84.746	ENSELUG00000002322	lsm1	89	84.746	Esox_lucius
ENSFALG00000006723	LSM1	100	94.915	ENSFCAG00000039335	LSM1	89	94.915	Felis_catus
ENSFALG00000006723	LSM1	100	94.915	ENSFDAG00000007658	LSM1	89	94.915	Fukomys_damarensis
ENSFALG00000006723	LSM1	100	82.203	ENSFHEG00000009556	lsm1	89	82.203	Fundulus_heteroclitus
ENSFALG00000006723	LSM1	100	82.203	ENSGMOG00000016651	lsm1	87	82.203	Gadus_morhua
ENSFALG00000006723	LSM1	100	96.610	ENSGALG00000003245	LSM1	89	96.610	Gallus_gallus
ENSFALG00000006723	LSM1	100	82.203	ENSGAFG00000011355	lsm1	89	82.203	Gambusia_affinis
ENSFALG00000006723	LSM1	100	83.051	ENSGACG00000011763	lsm1	87	83.051	Gasterosteus_aculeatus
ENSFALG00000006723	LSM1	100	97.458	ENSGAGG00000024065	LSM1	89	97.458	Gopherus_agassizii
ENSFALG00000006723	LSM1	100	94.915	ENSGGOG00000022658	LSM1	89	94.915	Gorilla_gorilla
ENSFALG00000006723	LSM1	100	83.898	ENSHBUG00000010897	lsm1	89	83.051	Haplochromis_burtoni
ENSFALG00000006723	LSM1	100	94.915	ENSHGLG00000005711	LSM1	89	94.915	Heterocephalus_glaber_female
ENSFALG00000006723	LSM1	93	85.455	ENSHGLG00000017574	-	93	85.455	Heterocephalus_glaber_female
ENSFALG00000006723	LSM1	93	85.455	ENSHGLG00100012152	-	93	85.455	Heterocephalus_glaber_male
ENSFALG00000006723	LSM1	100	94.915	ENSHGLG00100017660	LSM1	89	94.915	Heterocephalus_glaber_male
ENSFALG00000006723	LSM1	100	82.203	ENSHCOG00000017233	lsm1	89	82.203	Hippocampus_comes
ENSFALG00000006723	LSM1	100	85.593	ENSIPUG00000002312	LSM1	89	85.593	Ictalurus_punctatus
ENSFALG00000006723	LSM1	53	98.387	ENSSTOG00000026870	LSM1	76	98.387	Ictidomys_tridecemlineatus
ENSFALG00000006723	LSM1	100	93.220	ENSJJAG00000014605	-	89	93.220	Jaculus_jaculus
ENSFALG00000006723	LSM1	100	83.051	ENSKMAG00000003016	lsm1	89	83.051	Kryptolebias_marmoratus
ENSFALG00000006723	LSM1	100	83.051	ENSLBEG00000022352	lsm1	89	83.051	Labrus_bergylta
ENSFALG00000006723	LSM1	100	92.373	ENSLACG00000010947	LSM1	98	92.373	Latimeria_chalumnae
ENSFALG00000006723	LSM1	100	92.373	ENSLOCG00000015149	lsm1	89	92.373	Lepisosteus_oculatus
ENSFALG00000006723	LSM1	100	94.915	ENSLAFG00000003534	LSM1	89	94.915	Loxodonta_africana
ENSFALG00000006723	LSM1	100	94.915	ENSMFAG00000032661	LSM1	89	94.915	Macaca_fascicularis
ENSFALG00000006723	LSM1	100	94.915	ENSMLEG00000034535	LSM1	89	94.915	Mandrillus_leucophaeus
ENSFALG00000006723	LSM1	100	83.051	ENSMAMG00000007464	lsm1	89	83.051	Mastacembelus_armatus
ENSFALG00000006723	LSM1	100	83.051	ENSMZEG00005010321	lsm1	89	83.051	Maylandia_zebra
ENSFALG00000006723	LSM1	100	96.610	ENSMGAG00000002125	LSM1	89	96.610	Meleagris_gallopavo
ENSFALG00000006723	LSM1	100	94.068	ENSMICG00000030726	LSM1	89	94.068	Microcebus_murinus
ENSFALG00000006723	LSM1	100	94.068	ENSMOCG00000022817	Lsm1	89	94.068	Microtus_ochrogaster
ENSFALG00000006723	LSM1	100	83.898	ENSMMOG00000015466	lsm1	89	83.898	Mola_mola
ENSFALG00000006723	LSM1	100	95.763	ENSMODG00000010732	-	89	95.763	Monodelphis_domestica
ENSFALG00000006723	LSM1	53	91.935	ENSMALG00000001478	lsm1	66	91.935	Monopterus_albus
ENSFALG00000006723	LSM1	100	92.373	MGP_CAROLIEiJ_G0030930	Lsm1	89	92.373	Mus_caroli
ENSFALG00000006723	LSM1	100	92.373	ENSMUSG00000037296	Lsm1	89	92.373	Mus_musculus
ENSFALG00000006723	LSM1	100	92.373	MGP_PahariEiJ_G0021400	Lsm1	89	92.373	Mus_pahari
ENSFALG00000006723	LSM1	100	92.373	MGP_SPRETEiJ_G0032049	Lsm1	89	92.373	Mus_spretus
ENSFALG00000006723	LSM1	100	95.763	ENSMPUG00000009883	LSM1	89	95.763	Mustela_putorius_furo
ENSFALG00000006723	LSM1	100	94.915	ENSMLUG00000003734	LSM1	89	94.915	Myotis_lucifugus
ENSFALG00000006723	LSM1	100	94.068	ENSNGAG00000003753	Lsm1	89	94.068	Nannospalax_galili
ENSFALG00000006723	LSM1	53	91.935	ENSNBRG00000017370	lsm1	53	91.935	Neolamprologus_brichardi
ENSFALG00000006723	LSM1	100	94.915	ENSNLEG00000029390	LSM1	89	94.915	Nomascus_leucogenys
ENSFALG00000006723	LSM1	100	95.763	ENSMEUG00000014077	LSM1	89	95.763	Notamacropus_eugenii
ENSFALG00000006723	LSM1	99	94.017	ENSOPRG00000000333	LSM1	100	94.017	Ochotona_princeps
ENSFALG00000006723	LSM1	100	94.915	ENSODEG00000004834	LSM1	89	94.915	Octodon_degus
ENSFALG00000006723	LSM1	100	83.051	ENSONIG00000010782	lsm1	89	83.051	Oreochromis_niloticus
ENSFALG00000006723	LSM1	100	94.915	ENSOANG00000003256	LSM1	89	94.915	Ornithorhynchus_anatinus
ENSFALG00000006723	LSM1	100	94.915	ENSOCUG00000015399	LSM1	89	94.915	Oryctolagus_cuniculus
ENSFALG00000006723	LSM1	100	84.746	ENSORLG00000030288	lsm1	89	84.746	Oryzias_latipes
ENSFALG00000006723	LSM1	100	83.051	ENSORLG00020006213	-	77	83.051	Oryzias_latipes_hni
ENSFALG00000006723	LSM1	100	84.746	ENSORLG00020003941	lsm1	89	84.746	Oryzias_latipes_hni
ENSFALG00000006723	LSM1	100	84.746	ENSORLG00015018350	lsm1	89	84.746	Oryzias_latipes_hsok
ENSFALG00000006723	LSM1	100	84.746	ENSOMEG00000012454	lsm1	89	84.746	Oryzias_melastigma
ENSFALG00000006723	LSM1	100	94.915	ENSOGAG00000015161	LSM1	89	94.915	Otolemur_garnettii
ENSFALG00000006723	LSM1	100	94.915	ENSOARG00000001317	LSM1	89	94.915	Ovis_aries
ENSFALG00000006723	LSM1	100	94.915	ENSPPAG00000032279	LSM1	89	94.915	Pan_paniscus
ENSFALG00000006723	LSM1	100	94.915	ENSPPRG00000014172	-	89	94.915	Panthera_pardus
ENSFALG00000006723	LSM1	100	94.915	ENSPTIG00000010289	LSM1	89	94.915	Panthera_tigris_altaica
ENSFALG00000006723	LSM1	100	94.915	ENSPTRG00000020169	LSM1	89	94.915	Pan_troglodytes
ENSFALG00000006723	LSM1	100	94.915	ENSPANG00000008814	LSM1	89	94.915	Papio_anubis
ENSFALG00000006723	LSM1	100	89.831	ENSPKIG00000001839	lsm1	89	88.983	Paramormyrops_kingsleyae
ENSFALG00000006723	LSM1	100	84.746	ENSPKIG00000019409	LSM1	88	84.746	Paramormyrops_kingsleyae
ENSFALG00000006723	LSM1	100	98.305	ENSPSIG00000012563	LSM1	91	98.305	Pelodiscus_sinensis
ENSFALG00000006723	LSM1	53	91.935	ENSPMGG00000022999	lsm1	59	91.935	Periophthalmus_magnuspinnatus
ENSFALG00000006723	LSM1	96	80.531	ENSPMAG00000002671	lsm1	100	80.531	Petromyzon_marinus
ENSFALG00000006723	LSM1	100	95.763	ENSPCIG00000008880	LSM1	89	95.763	Phascolarctos_cinereus
ENSFALG00000006723	LSM1	100	82.203	ENSPFOG00000016029	lsm1	89	82.203	Poecilia_formosa
ENSFALG00000006723	LSM1	100	82.203	ENSPLAG00000007879	lsm1	89	82.203	Poecilia_latipinna
ENSFALG00000006723	LSM1	100	82.203	ENSPMEG00000023550	lsm1	89	82.203	Poecilia_mexicana
ENSFALG00000006723	LSM1	100	82.203	ENSPREG00000009574	lsm1	89	82.203	Poecilia_reticulata
ENSFALG00000006723	LSM1	100	94.915	ENSPPYG00000018521	LSM1	89	94.915	Pongo_abelii
ENSFALG00000006723	LSM1	100	94.915	ENSPCOG00000020901	-	89	94.915	Propithecus_coquereli
ENSFALG00000006723	LSM1	100	94.915	ENSPVAG00000006016	LSM1	89	94.915	Pteropus_vampyrus
ENSFALG00000006723	LSM1	100	83.051	ENSPNYG00000018067	lsm1	89	83.051	Pundamilia_nyererei
ENSFALG00000006723	LSM1	100	85.593	ENSPNAG00000013707	lsm1	89	85.593	Pygocentrus_nattereri
ENSFALG00000006723	LSM1	100	93.220	ENSRNOG00000015375	Lsm1	89	93.220	Rattus_norvegicus
ENSFALG00000006723	LSM1	100	94.915	ENSRBIG00000027449	LSM1	89	94.915	Rhinopithecus_bieti
ENSFALG00000006723	LSM1	100	94.915	ENSRROG00000036074	LSM1	89	94.915	Rhinopithecus_roxellana
ENSFALG00000006723	LSM1	85	46.729	YJL124C	LSM1	62	46.729	Saccharomyces_cerevisiae
ENSFALG00000006723	LSM1	100	95.763	ENSSHAG00000017260	LSM1	89	95.763	Sarcophilus_harrisii
ENSFALG00000006723	LSM1	100	88.983	ENSSFOG00015019528	lsm1	89	88.983	Scleropages_formosus
ENSFALG00000006723	LSM1	100	83.051	ENSSMAG00000004930	lsm1	89	83.051	Scophthalmus_maximus
ENSFALG00000006723	LSM1	100	84.746	ENSSDUG00000021823	lsm1	89	84.746	Seriola_dumerili
ENSFALG00000006723	LSM1	100	84.746	ENSSLDG00000012154	lsm1	89	84.746	Seriola_lalandi_dorsalis
ENSFALG00000006723	LSM1	100	97.458	ENSSPUG00000014878	LSM1	89	97.458	Sphenodon_punctatus
ENSFALG00000006723	LSM1	100	82.203	ENSSPAG00000020548	lsm1	89	82.203	Stegastes_partitus
ENSFALG00000006723	LSM1	100	94.915	ENSSSCG00000039058	LSM1	89	94.915	Sus_scrofa
ENSFALG00000006723	LSM1	100	98.305	ENSTGUG00000004793	LSM1	89	98.305	Taeniopygia_guttata
ENSFALG00000006723	LSM1	100	85.593	ENSTRUG00000025239	lsm1	89	85.593	Takifugu_rubripes
ENSFALG00000006723	LSM1	100	86.441	ENSTNIG00000004055	lsm1	89	86.441	Tetraodon_nigroviridis
ENSFALG00000006723	LSM1	99	93.162	ENSTBEG00000015884	LSM1	100	93.162	Tupaia_belangeri
ENSFALG00000006723	LSM1	100	94.915	ENSTTRG00000004482	LSM1	89	94.915	Tursiops_truncatus
ENSFALG00000006723	LSM1	100	94.915	ENSUAMG00000004103	LSM1	89	94.915	Ursus_americanus
ENSFALG00000006723	LSM1	100	94.915	ENSUMAG00000009132	LSM1	89	94.915	Ursus_maritimus
ENSFALG00000006723	LSM1	53	98.387	ENSVPAG00000011593	LSM1	82	98.387	Vicugna_pacos
ENSFALG00000006723	LSM1	60	69.014	ENSVVUG00000014880	-	76	69.014	Vulpes_vulpes
ENSFALG00000006723	LSM1	100	94.915	ENSVVUG00000020191	LSM1	89	94.915	Vulpes_vulpes
ENSFALG00000006723	LSM1	100	90.164	ENSXETG00000009004	lsm1	89	90.164	Xenopus_tropicalis
ENSFALG00000006723	LSM1	100	83.051	ENSXCOG00000015631	lsm1	89	83.051	Xiphophorus_couchianus
ENSFALG00000006723	LSM1	100	83.051	ENSXMAG00000026637	lsm1	89	83.051	Xiphophorus_maculatus