EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFALG00000006876 (Gene tree)
Gene ID: -
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Minus strand
Length: 3574 bases
Position: chrJH603200.1:5103293-5106866
Accession: 25792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000007176	HVSL	PF09749.9	2.7e-62	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000007208	USB1-201	970	-	ENSFALP00000007176	266 (aa)	-	U3JWM2

Gene Model

Click here to download ENSFALG00000006876's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000006876's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000006876	USB1	99	61.624	ENSG00000103005	USB1	99	68.396	Homo_sapiens
ENSFALG00000006876	USB1	98	47.331	ENSAPOG00000011942	usb1	82	53.219	Acanthochromis_polyacanthus
ENSFALG00000006876	USB1	99	61.338	ENSAMEG00000017205	USB1	100	61.338	Ailuropoda_melanoleuca
ENSFALG00000006876	USB1	83	54.260	ENSACIG00000012234	usb1	82	53.982	Amphilophus_citrinellus
ENSFALG00000006876	USB1	98	48.057	ENSAOCG00000014831	usb1	99	47.703	Amphiprion_ocellaris
ENSFALG00000006876	USB1	98	48.410	ENSAPEG00000000296	usb1	99	48.057	Amphiprion_percula
ENSFALG00000006876	USB1	92	52.381	ENSATEG00000009348	usb1	82	53.846	Anabas_testudineus
ENSFALG00000006876	USB1	77	82.439	ENSAPLG00000002756	USB1	100	77.434	Anas_platyrhynchos
ENSFALG00000006876	USB1	84	66.079	ENSACAG00000015481	USB1	99	66.079	Anolis_carolinensis
ENSFALG00000006876	USB1	99	61.624	ENSANAG00000035640	USB1	85	66.372	Aotus_nancymaae
ENSFALG00000006876	USB1	92	49.796	ENSACLG00000020586	usb1	81	51.739	Astatotilapia_calliptera
ENSFALG00000006876	USB1	83	55.605	ENSAMXG00000040146	usb1	74	55.605	Astyanax_mexicanus
ENSFALG00000006876	USB1	99	62.454	ENSBTAG00000015758	USB1	85	66.071	Bos_taurus
ENSFALG00000006876	USB1	99	62.921	ENSCJAG00000011733	USB1	85	67.257	Callithrix_jacchus
ENSFALG00000006876	USB1	99	60.145	ENSCAFG00000008556	USB1	73	60.440	Canis_familiaris
ENSFALG00000006876	USB1	99	60.595	ENSCAFG00020009263	USB1	84	65.919	Canis_lupus_dingo
ENSFALG00000006876	USB1	99	61.338	ENSCHIG00000024290	USB1	100	58.273	Capra_hircus
ENSFALG00000006876	USB1	99	60.219	ENSTSYG00000006997	USB1	100	59.854	Carlito_syrichta
ENSFALG00000006876	USB1	86	50.870	ENSCAPG00000009057	USB1	99	50.870	Cavia_aperea
ENSFALG00000006876	USB1	99	58.801	ENSCPOG00000014325	USB1	86	61.739	Cavia_porcellus
ENSFALG00000006876	USB1	99	61.624	ENSCCAG00000022132	USB1	85	66.372	Cebus_capucinus
ENSFALG00000006876	USB1	99	62.547	ENSCATG00000032174	USB1	85	67.257	Cercocebus_atys
ENSFALG00000006876	USB1	66	63.429	ENSCLAG00000007363	USB1	91	65.000	Chinchilla_lanigera
ENSFALG00000006876	USB1	99	62.731	ENSCSAG00000004783	USB1	85	67.257	Chlorocebus_sabaeus
ENSFALG00000006876	USB1	88	72.222	ENSCPBG00000026943	USB1	84	72.103	Chrysemys_picta_bellii
ENSFALG00000006876	USB1	86	30.738	ENSCING00000011490	-	89	30.738	Ciona_intestinalis
ENSFALG00000006876	USB1	99	63.333	ENSCANG00000037135	USB1	100	62.406	Colobus_angolensis_palliatus
ENSFALG00000006876	USB1	99	60.219	ENSCGRG00001011243	USB1	84	65.625	Cricetulus_griseus_chok1gshd
ENSFALG00000006876	USB1	99	60.219	ENSCGRG00000013252	USB1	84	65.625	Cricetulus_griseus_crigri
ENSFALG00000006876	USB1	98	49.451	ENSCSEG00000013881	usb1	83	52.609	Cynoglossus_semilaevis
ENSFALG00000006876	USB1	78	54.106	ENSCVAG00000009252	usb1	97	52.193	Cyprinodon_variegatus
ENSFALG00000006876	USB1	94	49.603	ENSDARG00000003841	usb1	84	52.814	Danio_rerio
ENSFALG00000006876	USB1	99	59.398	ENSDORG00000001888	Usb1	85	63.839	Dipodomys_ordii
ENSFALG00000006876	USB1	98	37.546	FBgn0037713	CG16790	88	38.793	Drosophila_melanogaster
ENSFALG00000006876	USB1	99	50.368	ENSETEG00000019682	USB1	100	50.187	Echinops_telfairi
ENSFALG00000006876	USB1	83	49.099	ENSEBUG00000005889	usb1	80	47.807	Eptatretus_burgeri
ENSFALG00000006876	USB1	99	61.798	ENSEASG00005005484	USB1	85	66.071	Equus_asinus_asinus
ENSFALG00000006876	USB1	99	62.782	ENSECAG00000019493	USB1	77	67.265	Equus_caballus
ENSFALG00000006876	USB1	66	58.857	ENSEEUG00000000154	USB1	60	58.750	Erinaceus_europaeus
ENSFALG00000006876	USB1	85	51.542	ENSELUG00000010974	usb1	83	51.542	Esox_lucius
ENSFALG00000006876	USB1	99	62.825	ENSFCAG00000002693	USB1	100	59.854	Felis_catus
ENSFALG00000006876	USB1	99	59.551	ENSFDAG00000010052	USB1	100	59.551	Fukomys_damarensis
ENSFALG00000006876	USB1	85	49.180	ENSFHEG00000012334	usb1	77	53.368	Fundulus_heteroclitus
ENSFALG00000006876	USB1	83	52.703	ENSGMOG00000004228	usb1	99	52.703	Gadus_morhua
ENSFALG00000006876	USB1	77	83.333	ENSGALG00000035604	USB1	100	72.659	Gallus_gallus
ENSFALG00000006876	USB1	98	49.819	ENSGAFG00000021890	usb1	82	54.585	Gambusia_affinis
ENSFALG00000006876	USB1	92	52.610	ENSGACG00000003257	usb1	83	54.113	Gasterosteus_aculeatus
ENSFALG00000006876	USB1	99	67.037	ENSGAGG00000022572	USB1	85	72.103	Gopherus_agassizii
ENSFALG00000006876	USB1	99	61.255	ENSGGOG00000017147	USB1	85	65.929	Gorilla_gorilla
ENSFALG00000006876	USB1	95	48.235	ENSHBUG00000009823	usb1	82	51.739	Haplochromis_burtoni
ENSFALG00000006876	USB1	99	60.300	ENSHGLG00000016078	USB1	98	60.300	Heterocephalus_glaber_female
ENSFALG00000006876	USB1	99	60.300	ENSHGLG00100005562	USB1	98	60.300	Heterocephalus_glaber_male
ENSFALG00000006876	USB1	79	54.976	ENSHCOG00000015633	usb1	86	54.260	Hippocampus_comes
ENSFALG00000006876	USB1	84	55.357	ENSIPUG00000008601	usb1	78	55.357	Ictalurus_punctatus
ENSFALG00000006876	USB1	99	61.905	ENSSTOG00000007548	USB1	82	66.964	Ictidomys_tridecemlineatus
ENSFALG00000006876	USB1	99	60.300	ENSJJAG00000021859	Usb1	99	60.300	Jaculus_jaculus
ENSFALG00000006876	USB1	96	48.828	ENSKMAG00000007200	usb1	81	53.043	Kryptolebias_marmoratus
ENSFALG00000006876	USB1	86	48.707	ENSLBEG00000008452	usb1	65	51.707	Labrus_bergylta
ENSFALG00000006876	USB1	96	51.880	ENSLACG00000000105	USB1	81	57.203	Latimeria_chalumnae
ENSFALG00000006876	USB1	97	53.817	ENSLOCG00000000465	usb1	82	58.261	Lepisosteus_oculatus
ENSFALG00000006876	USB1	98	50.735	ENSLAFG00000002267	USB1	83	55.310	Loxodonta_africana
ENSFALG00000006876	USB1	99	62.172	ENSMFAG00000003926	USB1	85	66.814	Macaca_fascicularis
ENSFALG00000006876	USB1	99	62.172	ENSMMUG00000022669	USB1	85	66.814	Macaca_mulatta
ENSFALG00000006876	USB1	99	61.798	ENSMNEG00000042487	USB1	85	66.372	Macaca_nemestrina
ENSFALG00000006876	USB1	99	62.172	ENSMLEG00000028756	USB1	85	66.814	Mandrillus_leucophaeus
ENSFALG00000006876	USB1	98	50.362	ENSMAMG00000015092	usb1	82	54.348	Mastacembelus_armatus
ENSFALG00000006876	USB1	92	49.796	ENSMZEG00005010008	usb1	82	51.739	Maylandia_zebra
ENSFALG00000006876	USB1	99	60.674	ENSMAUG00000007832	Usb1	100	60.674	Mesocricetus_auratus
ENSFALG00000006876	USB1	84	67.411	ENSMICG00000004900	USB1	85	67.411	Microcebus_murinus
ENSFALG00000006876	USB1	99	61.364	ENSMOCG00000022647	Usb1	78	69.378	Microtus_ochrogaster
ENSFALG00000006876	USB1	79	55.189	ENSMMOG00000000490	usb1	82	55.189	Mola_mola
ENSFALG00000006876	USB1	80	67.925	ENSMODG00000014067	USB1	84	66.667	Monodelphis_domestica
ENSFALG00000006876	USB1	92	52.988	ENSMALG00000005930	usb1	81	54.506	Monopterus_albus
ENSFALG00000006876	USB1	99	58.491	MGP_CAROLIEiJ_G0031421	Usb1	98	61.261	Mus_caroli
ENSFALG00000006876	USB1	99	58.868	ENSMUSG00000031792	Usb1	98	61.261	Mus_musculus
ENSFALG00000006876	USB1	99	59.245	MGP_PahariEiJ_G0023019	Usb1	98	62.609	Mus_pahari
ENSFALG00000006876	USB1	99	58.113	MGP_SPRETEiJ_G0032540	Usb1	99	58.113	Mus_spretus
ENSFALG00000006876	USB1	99	60.223	ENSMPUG00000004684	USB1	96	60.223	Mustela_putorius_furo
ENSFALG00000006876	USB1	84	66.964	ENSMLUG00000007400	USB1	97	66.964	Myotis_lucifugus
ENSFALG00000006876	USB1	99	61.710	ENSNGAG00000009703	Usb1	100	61.710	Nannospalax_galili
ENSFALG00000006876	USB1	95	44.706	ENSNBRG00000008747	usb1	98	52.607	Neolamprologus_brichardi
ENSFALG00000006876	USB1	94	61.328	ENSNLEG00000003340	USB1	100	59.846	Nomascus_leucogenys
ENSFALG00000006876	USB1	60	61.765	ENSOPRG00000011803	USB1	70	61.765	Ochotona_princeps
ENSFALG00000006876	USB1	99	58.271	ENSODEG00000016214	USB1	99	56.818	Octodon_degus
ENSFALG00000006876	USB1	98	48.014	ENSONIG00000011063	usb1	82	52.174	Oreochromis_niloticus
ENSFALG00000006876	USB1	86	69.264	ENSOANG00000012118	USB1	96	69.264	Ornithorhynchus_anatinus
ENSFALG00000006876	USB1	92	51.429	ENSORLG00000012479	usb1	84	53.913	Oryzias_latipes
ENSFALG00000006876	USB1	92	51.020	ENSORLG00020018671	usb1	85	53.478	Oryzias_latipes_hni
ENSFALG00000006876	USB1	92	51.429	ENSORLG00015009679	usb1	85	53.913	Oryzias_latipes_hsok
ENSFALG00000006876	USB1	85	53.097	ENSOMEG00000012930	usb1	82	53.097	Oryzias_melastigma
ENSFALG00000006876	USB1	99	58.427	ENSOGAG00000003273	USB1	83	62.054	Otolemur_garnettii
ENSFALG00000006876	USB1	91	62.348	ENSOARG00000001107	USB1	86	65.179	Ovis_aries
ENSFALG00000006876	USB1	99	61.624	ENSPPAG00000042137	USB1	85	66.372	Pan_paniscus
ENSFALG00000006876	USB1	99	60.727	ENSPPRG00000024797	USB1	100	59.489	Panthera_pardus
ENSFALG00000006876	USB1	99	62.082	ENSPTIG00000007506	USB1	100	59.124	Panthera_tigris_altaica
ENSFALG00000006876	USB1	99	57.196	ENSPTRG00000008172	USB1	99	68.868	Pan_troglodytes
ENSFALG00000006876	USB1	99	62.172	ENSPANG00000025138	USB1	85	66.814	Papio_anubis
ENSFALG00000006876	USB1	84	58.036	ENSPKIG00000015109	usb1	76	58.036	Paramormyrops_kingsleyae
ENSFALG00000006876	USB1	84	53.333	ENSPSIG00000004305	USB1	100	53.333	Pelodiscus_sinensis
ENSFALG00000006876	USB1	83	52.212	ENSPMGG00000017725	usb1	85	52.212	Periophthalmus_magnuspinnatus
ENSFALG00000006876	USB1	99	59.353	ENSPEMG00000016183	Usb1	82	66.071	Peromyscus_maniculatus_bairdii
ENSFALG00000006876	USB1	84	53.982	ENSPMAG00000000462	usb1	95	53.982	Petromyzon_marinus
ENSFALG00000006876	USB1	98	49.275	ENSPFOG00000011130	usb1	81	54.185	Poecilia_formosa
ENSFALG00000006876	USB1	98	49.281	ENSPLAG00000009820	usb1	81	54.148	Poecilia_latipinna
ENSFALG00000006876	USB1	98	50.000	ENSPMEG00000006402	usb1	81	54.185	Poecilia_mexicana
ENSFALG00000006876	USB1	85	50.000	ENSPREG00000001047	usb1	78	55.385	Poecilia_reticulata
ENSFALG00000006876	USB1	94	58.661	ENSPPYG00000007401	USB1	85	62.911	Pongo_abelii
ENSFALG00000006876	USB1	99	60.886	ENSPCOG00000022612	USB1	85	65.625	Propithecus_coquereli
ENSFALG00000006876	USB1	99	60.370	ENSPVAG00000004613	USB1	100	58.889	Pteropus_vampyrus
ENSFALG00000006876	USB1	96	48.249	ENSPNYG00000022262	usb1	82	52.174	Pundamilia_nyererei
ENSFALG00000006876	USB1	98	48.805	ENSPNAG00000011736	usb1	99	47.782	Pygocentrus_nattereri
ENSFALG00000006876	USB1	99	58.868	ENSRNOG00000013216	Usb1	99	58.868	Rattus_norvegicus
ENSFALG00000006876	USB1	99	58.303	ENSRBIG00000044466	USB1	99	69.340	Rhinopithecus_bieti
ENSFALG00000006876	USB1	99	63.100	ENSRROG00000029211	USB1	85	67.257	Rhinopithecus_roxellana
ENSFALG00000006876	USB1	99	56.981	ENSSBOG00000029362	USB1	85	67.257	Saimiri_boliviensis_boliviensis
ENSFALG00000006876	USB1	80	64.151	ENSSHAG00000006993	USB1	89	63.111	Sarcophilus_harrisii
ENSFALG00000006876	USB1	87	59.052	ENSSFOG00015023663	usb1	72	58.874	Scleropages_formosus
ENSFALG00000006876	USB1	93	50.566	ENSSMAG00000015834	usb1	82	52.049	Scophthalmus_maximus
ENSFALG00000006876	USB1	83	57.848	ENSSDUG00000002949	usb1	83	57.848	Seriola_dumerili
ENSFALG00000006876	USB1	98	52.471	ENSSLDG00000014174	usb1	82	56.522	Seriola_lalandi_dorsalis
ENSFALG00000006876	USB1	79	72.986	ENSSPUG00000006741	USB1	99	72.986	Sphenodon_punctatus
ENSFALG00000006876	USB1	98	46.316	ENSSPAG00000007484	usb1	99	46.316	Stegastes_partitus
ENSFALG00000006876	USB1	99	62.030	ENSSSCG00000002807	USB1	99	62.030	Sus_scrofa
ENSFALG00000006876	USB1	82	95.872	ENSTGUG00000004792	USB1	100	86.842	Taeniopygia_guttata
ENSFALG00000006876	USB1	98	51.282	ENSTRUG00000021069	usb1	84	54.148	Takifugu_rubripes
ENSFALG00000006876	USB1	99	45.588	ENSTNIG00000000626	usb1	99	45.421	Tetraodon_nigroviridis
ENSFALG00000006876	USB1	88	44.915	ENSTBEG00000001507	USB1	97	45.982	Tupaia_belangeri
ENSFALG00000006876	USB1	99	61.710	ENSUAMG00000016823	USB1	100	61.710	Ursus_americanus
ENSFALG00000006876	USB1	79	66.351	ENSUMAG00000021369	USB1	99	66.351	Ursus_maritimus
ENSFALG00000006876	USB1	99	62.313	ENSVVUG00000023700	USB1	95	61.382	Vulpes_vulpes
ENSFALG00000006876	USB1	98	51.341	ENSXETG00000013795	usb1	90	56.195	Xenopus_tropicalis
ENSFALG00000006876	USB1	85	54.585	ENSXMAG00000024687	usb1	67	54.585	Xiphophorus_maculatus