EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFALG00000007021 (Gene tree)
Gene ID: -
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Minus strand
Length: 33415 bases
Position: chrJH603178.1:4265809-4299223
Accession: 101808622
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000007326	XRN_N	PF03159.18	5.4e-97	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000007358	XRN1-201	5373	XM_016300668	ENSFALP00000007326	1768 (aa)	XP_005051089	U3JX22

Gene Model

Click here to download ENSFALG00000007021's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000007021's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000007021	XRN1	100	74.733	ENSG00000114127	XRN1	100	92.727	Homo_sapiens
ENSFALG00000007021	XRN1	92	72.045	ENSAPOG00000000622	xrn1	99	71.965	Acanthochromis_polyacanthus
ENSFALG00000007021	XRN1	100	74.622	ENSAMEG00000012538	XRN1	100	75.406	Ailuropoda_melanoleuca
ENSFALG00000007021	XRN1	97	70.830	ENSACIG00000001057	xrn1	98	72.654	Amphilophus_citrinellus
ENSFALG00000007021	XRN1	95	71.051	ENSAOCG00000014097	xrn1	100	69.650	Amphiprion_ocellaris
ENSFALG00000007021	XRN1	100	60.331	ENSAPEG00000006620	xrn1	93	70.195	Amphiprion_percula
ENSFALG00000007021	XRN1	95	69.767	ENSATEG00000009752	xrn1	100	69.565	Anabas_testudineus
ENSFALG00000007021	XRN1	99	91.657	ENSAPLG00000004905	XRN1	100	91.657	Anas_platyrhynchos
ENSFALG00000007021	XRN1	100	78.339	ENSACAG00000004985	XRN1	100	78.227	Anolis_carolinensis
ENSFALG00000007021	XRN1	100	74.396	ENSANAG00000029013	XRN1	99	86.042	Aotus_nancymaae
ENSFALG00000007021	XRN1	100	60.886	ENSACLG00000004806	xrn1	99	60.908	Astatotilapia_calliptera
ENSFALG00000007021	XRN1	96	71.073	ENSAMXG00000019370	xrn1	95	93.204	Astyanax_mexicanus
ENSFALG00000007021	XRN1	100	73.508	ENSBTAG00000011524	XRN1	100	73.954	Bos_taurus
ENSFALG00000007021	XRN1	66	38.504	WBGene00012730	xrn-1	83	37.888	Caenorhabditis_elegans
ENSFALG00000007021	XRN1	100	73.952	ENSCJAG00000001872	XRN1	100	74.621	Callithrix_jacchus
ENSFALG00000007021	XRN1	100	74.902	ENSCAFG00000007783	XRN1	100	75.576	Canis_familiaris
ENSFALG00000007021	XRN1	100	74.902	ENSCAFG00020009120	XRN1	99	85.759	Canis_lupus_dingo
ENSFALG00000007021	XRN1	99	74.550	ENSCHIG00000019192	XRN1	99	74.944	Capra_hircus
ENSFALG00000007021	XRN1	100	74.467	ENSTSYG00000002705	XRN1	100	74.804	Carlito_syrichta
ENSFALG00000007021	XRN1	100	74.396	ENSCCAG00000034800	XRN1	99	88.712	Cebus_capucinus
ENSFALG00000007021	XRN1	100	74.958	ENSCATG00000041794	XRN1	100	74.902	Cercocebus_atys
ENSFALG00000007021	XRN1	100	73.681	ENSCLAG00000001451	XRN1	99	88.553	Chinchilla_lanigera
ENSFALG00000007021	XRN1	100	74.415	ENSCSAG00000011265	XRN1	100	74.359	Chlorocebus_sabaeus
ENSFALG00000007021	XRN1	58	96.104	ENSCHOG00000013961	-	62	96.104	Choloepus_hoffmanni
ENSFALG00000007021	XRN1	67	45.859	ENSCSAVG00000008584	-	98	45.625	Ciona_savignyi
ENSFALG00000007021	XRN1	100	75.070	ENSCANG00000037495	XRN1	99	88.712	Colobus_angolensis_palliatus
ENSFALG00000007021	XRN1	100	73.918	ENSCGRG00001019411	Xrn1	99	88.076	Cricetulus_griseus_chok1gshd
ENSFALG00000007021	XRN1	100	73.918	ENSCGRG00000012464	Xrn1	99	88.076	Cricetulus_griseus_crigri
ENSFALG00000007021	XRN1	96	65.972	ENSCSEG00000021285	xrn1	94	94.231	Cynoglossus_semilaevis
ENSFALG00000007021	XRN1	64	72.551	ENSCVAG00000013089	xrn1	99	72.374	Cyprinodon_variegatus
ENSFALG00000007021	XRN1	100	63.469	ENSDARG00000091652	xrn1	98	80.761	Danio_rerio
ENSFALG00000007021	XRN1	100	72.574	ENSDORG00000013833	Xrn1	100	73.528	Dipodomys_ordii
ENSFALG00000007021	XRN1	67	40.643	FBgn0020261	pcm	72	40.313	Drosophila_melanogaster
ENSFALG00000007021	XRN1	86	89.189	ENSETEG00000003978	XRN1	88	90.323	Echinops_telfairi
ENSFALG00000007021	XRN1	100	75.322	ENSEASG00005002687	XRN1	99	87.917	Equus_asinus_asinus
ENSFALG00000007021	XRN1	100	74.136	ENSECAG00000008301	XRN1	100	74.526	Equus_caballus
ENSFALG00000007021	XRN1	89	75.122	ENSEEUG00000011323	XRN1	92	75.122	Erinaceus_europaeus
ENSFALG00000007021	XRN1	100	62.082	ENSELUG00000000169	xrn1	100	62.257	Esox_lucius
ENSFALG00000007021	XRN1	100	69.865	ENSFCAG00000027589	XRN1	99	88.571	Felis_catus
ENSFALG00000007021	XRN1	100	73.808	ENSFDAG00000020494	XRN1	99	87.917	Fukomys_damarensis
ENSFALG00000007021	XRN1	81	67.632	ENSGMOG00000006396	xrn1	84	67.550	Gadus_morhua
ENSFALG00000007021	XRN1	100	92.616	ENSGALG00000002706	XRN1	100	92.616	Gallus_gallus
ENSFALG00000007021	XRN1	100	59.124	ENSGACG00000014328	xrn1	100	59.280	Gasterosteus_aculeatus
ENSFALG00000007021	XRN1	95	86.564	ENSGAGG00000017535	XRN1	99	86.564	Gopherus_agassizii
ENSFALG00000007021	XRN1	100	74.958	ENSGGOG00000008047	XRN1	100	74.958	Gorilla_gorilla
ENSFALG00000007021	XRN1	95	69.767	ENSHBUG00000005908	xrn1	98	73.608	Haplochromis_burtoni
ENSFALG00000007021	XRN1	100	74.706	ENSHGLG00000014476	XRN1	99	88.553	Heterocephalus_glaber_female
ENSFALG00000007021	XRN1	100	74.762	ENSHGLG00100015130	XRN1	99	88.553	Heterocephalus_glaber_male
ENSFALG00000007021	XRN1	91	71.278	ENSHCOG00000014062	xrn1	99	70.864	Hippocampus_comes
ENSFALG00000007021	XRN1	95	71.685	ENSIPUG00000015229	xrn1	99	71.919	Ictalurus_punctatus
ENSFALG00000007021	XRN1	100	74.986	ENSSTOG00000013552	XRN1	99	88.235	Ictidomys_tridecemlineatus
ENSFALG00000007021	XRN1	99	73.235	ENSJJAG00000010863	Xrn1	99	86.755	Jaculus_jaculus
ENSFALG00000007021	XRN1	98	67.835	ENSKMAG00000021356	xrn1	94	75.899	Kryptolebias_marmoratus
ENSFALG00000007021	XRN1	94	70.262	ENSLBEG00000018656	xrn1	97	95.146	Labrus_bergylta
ENSFALG00000007021	XRN1	100	70.470	ENSLACG00000009020	XRN1	100	70.526	Latimeria_chalumnae
ENSFALG00000007021	XRN1	100	65.965	ENSLOCG00000007944	xrn1	100	65.965	Lepisosteus_oculatus
ENSFALG00000007021	XRN1	60	85.487	ENSLAFG00000015426	XRN1	100	85.487	Loxodonta_africana
ENSFALG00000007021	XRN1	100	74.958	ENSMFAG00000032599	XRN1	100	74.902	Macaca_fascicularis
ENSFALG00000007021	XRN1	100	74.958	ENSMMUG00000014038	XRN1	100	74.902	Macaca_mulatta
ENSFALG00000007021	XRN1	100	74.789	ENSMNEG00000034217	XRN1	100	74.733	Macaca_nemestrina
ENSFALG00000007021	XRN1	92	70.388	ENSMAMG00000013219	xrn1	92	77.637	Mastacembelus_armatus
ENSFALG00000007021	XRN1	100	60.831	ENSMZEG00005015099	xrn1	99	60.853	Maylandia_zebra
ENSFALG00000007021	XRN1	99	88.806	ENSMGAG00000006333	XRN1	100	88.806	Meleagris_gallopavo
ENSFALG00000007021	XRN1	100	74.692	ENSMICG00000048948	XRN1	96	95.146	Microcebus_murinus
ENSFALG00000007021	XRN1	55	88.076	ENSMOCG00000008665	Xrn1	99	87.758	Microtus_ochrogaster
ENSFALG00000007021	XRN1	100	74.805	ENSMODG00000021236	XRN1	100	75.251	Monodelphis_domestica
ENSFALG00000007021	XRN1	94	67.910	ENSMALG00000004098	xrn1	98	67.988	Monopterus_albus
ENSFALG00000007021	XRN1	100	66.704	MGP_CAROLIEiJ_G0032535	Xrn1	100	95.000	Mus_caroli
ENSFALG00000007021	XRN1	100	72.809	ENSMUSG00000032410	Xrn1	100	95.000	Mus_musculus
ENSFALG00000007021	XRN1	100	73.172	MGP_PahariEiJ_G0015404	Xrn1	100	95.000	Mus_pahari
ENSFALG00000007021	XRN1	100	72.727	MGP_SPRETEiJ_G0033678	Xrn1	100	95.000	Mus_spretus
ENSFALG00000007021	XRN1	100	73.675	ENSMPUG00000012040	XRN1	100	74.400	Mustela_putorius_furo
ENSFALG00000007021	XRN1	100	74.579	ENSMLUG00000016885	XRN1	100	74.523	Myotis_lucifugus
ENSFALG00000007021	XRN1	55	82.166	ENSNGAG00000023964	Xrn1	99	83.121	Nannospalax_galili
ENSFALG00000007021	XRN1	100	74.733	ENSNLEG00000004726	XRN1	100	74.846	Nomascus_leucogenys
ENSFALG00000007021	XRN1	68	95.876	ENSMEUG00000014473	-	72	96.117	Notamacropus_eugenii
ENSFALG00000007021	XRN1	79	75.962	ENSOPRG00000007337	-	78	77.083	Ochotona_princeps
ENSFALG00000007021	XRN1	100	60.598	ENSONIG00000016673	xrn1	99	64.411	Oreochromis_niloticus
ENSFALG00000007021	XRN1	92	72.165	ENSOANG00000006735	XRN1	100	72.821	Ornithorhynchus_anatinus
ENSFALG00000007021	XRN1	100	74.485	ENSOCUG00000001861	XRN1	100	74.512	Oryctolagus_cuniculus
ENSFALG00000007021	XRN1	94	71.462	ENSORLG00000013005	xrn1	96	71.462	Oryzias_latipes
ENSFALG00000007021	XRN1	94	71.306	ENSORLG00020005559	xrn1	98	71.306	Oryzias_latipes_hni
ENSFALG00000007021	XRN1	94	71.073	ENSORLG00015022523	xrn1	98	71.073	Oryzias_latipes_hsok
ENSFALG00000007021	XRN1	94	71.262	ENSOMEG00000015397	xrn1	100	72.419	Oryzias_melastigma
ENSFALG00000007021	XRN1	100	71.619	ENSOGAG00000000170	XRN1	100	72.241	Otolemur_garnettii
ENSFALG00000007021	XRN1	99	74.358	ENSOARG00000006343	XRN1	99	74.693	Ovis_aries
ENSFALG00000007021	XRN1	100	74.496	ENSPPAG00000010180	XRN1	100	75.070	Pan_paniscus
ENSFALG00000007021	XRN1	100	74.130	ENSPPRG00000007125	XRN1	100	74.804	Panthera_pardus
ENSFALG00000007021	XRN1	100	74.130	ENSPTIG00000021081	XRN1	100	74.804	Panthera_tigris_altaica
ENSFALG00000007021	XRN1	100	74.552	ENSPTRG00000015482	XRN1	100	75.126	Pan_troglodytes
ENSFALG00000007021	XRN1	100	74.902	ENSPANG00000010638	XRN1	100	74.846	Papio_anubis
ENSFALG00000007021	XRN1	100	83.174	ENSPSIG00000018050	XRN1	100	82.950	Pelodiscus_sinensis
ENSFALG00000007021	XRN1	54	75.868	ENSPMGG00000002648	xrn1	98	77.866	Periophthalmus_magnuspinnatus
ENSFALG00000007021	XRN1	55	88.076	ENSPEMG00000020610	Xrn1	99	87.758	Peromyscus_maniculatus_bairdii
ENSFALG00000007021	XRN1	62	50.588	ENSPMAG00000002975	xrn1	92	76.724	Petromyzon_marinus
ENSFALG00000007021	XRN1	95	83.780	ENSPCIG00000028735	XRN1	99	89.172	Phascolarctos_cinereus
ENSFALG00000007021	XRN1	86	69.824	ENSPFOG00000013932	xrn1	95	69.748	Poecilia_formosa
ENSFALG00000007021	XRN1	92	63.475	ENSPLAG00000021653	xrn1	99	63.609	Poecilia_latipinna
ENSFALG00000007021	XRN1	89	63.659	ENSPMEG00000003076	xrn1	95	64.277	Poecilia_mexicana
ENSFALG00000007021	XRN1	94	69.464	ENSPREG00000021147	xrn1	97	69.339	Poecilia_reticulata
ENSFALG00000007021	XRN1	100	74.080	ENSPPYG00000014172	XRN1	100	74.136	Pongo_abelii
ENSFALG00000007021	XRN1	83	75.846	ENSPCAG00000005638	XRN1	93	75.591	Procavia_capensis
ENSFALG00000007021	XRN1	100	74.733	ENSPCOG00000013089	XRN1	99	88.871	Propithecus_coquereli
ENSFALG00000007021	XRN1	87	82.654	ENSPVAG00000016265	XRN1	91	82.654	Pteropus_vampyrus
ENSFALG00000007021	XRN1	94	71.085	ENSPNYG00000010570	xrn1	99	70.373	Pundamilia_nyererei
ENSFALG00000007021	XRN1	95	70.675	ENSPNAG00000023531	xrn1	99	70.675	Pygocentrus_nattereri
ENSFALG00000007021	XRN1	100	73.708	ENSRNOG00000042951	Xrn1	100	73.989	Rattus_norvegicus
ENSFALG00000007021	XRN1	100	74.428	ENSRBIG00000041227	XRN1	100	74.372	Rhinopithecus_bieti
ENSFALG00000007021	XRN1	63	54.768	YGL173C	XRN1	73	54.768	Saccharomyces_cerevisiae
ENSFALG00000007021	XRN1	100	74.116	ENSSBOG00000029561	XRN1	100	74.396	Saimiri_boliviensis_boliviensis
ENSFALG00000007021	XRN1	99	76.266	ENSSHAG00000016207	XRN1	100	76.722	Sarcophilus_harrisii
ENSFALG00000007021	XRN1	92	72.382	ENSSFOG00015024211	xrn1	99	72.382	Scleropages_formosus
ENSFALG00000007021	XRN1	93	69.044	ENSSMAG00000016534	xrn1	100	69.044	Scophthalmus_maximus
ENSFALG00000007021	XRN1	87	70.965	ENSSDUG00000010306	xrn1	99	71.361	Seriola_dumerili
ENSFALG00000007021	XRN1	94	69.585	ENSSLDG00000021543	xrn1	100	67.723	Seriola_lalandi_dorsalis
ENSFALG00000007021	XRN1	64	77.640	ENSSARG00000007741	-	81	77.640	Sorex_araneus
ENSFALG00000007021	XRN1	100	95.871	ENSTGUG00000008498	XRN1	100	95.871	Taeniopygia_guttata
ENSFALG00000007021	XRN1	94	69.153	ENSTRUG00000004895	xrn1	99	75.934	Takifugu_rubripes
ENSFALG00000007021	XRN1	100	57.277	ENSTNIG00000017615	xrn1	100	57.581	Tetraodon_nigroviridis
ENSFALG00000007021	XRN1	85	91.105	ENSTBEG00000003256	XRN1	84	91.105	Tupaia_belangeri
ENSFALG00000007021	XRN1	100	69.900	ENSTTRG00000012914	XRN1	100	70.290	Tursiops_truncatus
ENSFALG00000007021	XRN1	100	73.457	ENSUAMG00000001608	XRN1	99	84.102	Ursus_americanus
ENSFALG00000007021	XRN1	100	75.084	ENSUMAG00000013625	XRN1	100	75.814	Ursus_maritimus
ENSFALG00000007021	XRN1	100	70.592	ENSVPAG00000004690	XRN1	100	71.261	Vicugna_pacos
ENSFALG00000007021	XRN1	100	74.846	ENSVVUG00000024461	XRN1	99	88.553	Vulpes_vulpes
ENSFALG00000007021	XRN1	100	66.982	ENSXETG00000000619	xrn1	97	87.634	Xenopus_tropicalis
ENSFALG00000007021	XRN1	92	72.058	ENSXCOG00000007917	xrn1	97	72.058	Xiphophorus_couchianus
ENSFALG00000007021	XRN1	89	71.417	ENSXMAG00000018320	xrn1	99	71.898	Xiphophorus_maculatus