EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFALG00000008750 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 37278 bases
Position: chrJH603207.1:8175014-8212291
Accession: 101820191
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000009129	RRM_1	PF00076.22	7.2e-33	1	2
ENSFALP00000009129	RRM_1	PF00076.22	7.2e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000009168	PSPC1-201	2281	XM_005038123	ENSFALP00000009129	528 (aa)	XP_005038180	U3K275

Gene Model

Click here to download ENSFALG00000008750's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000008750's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFALG00000008750	PSPC1	88	53.488	ENSFALG00000011765	NONO	91	55.789
ENSFALG00000008750	PSPC1	73	57.772	ENSFALG00000000731	SFPQ	91	61.652

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000008750	PSPC1	99	87.954	ENSG00000121390	PSPC1	89	94.647	Homo_sapiens
ENSFALG00000008750	PSPC1	90	68.485	ENSAPOG00000015946	pspc1	99	63.148	Acanthochromis_polyacanthus
ENSFALG00000008750	PSPC1	99	87.954	ENSAMEG00000017420	PSPC1	89	94.647	Ailuropoda_melanoleuca
ENSFALG00000008750	PSPC1	99	56.169	ENSACIG00000018695	pspc1	99	53.918	Amphilophus_citrinellus
ENSFALG00000008750	PSPC1	90	67.611	ENSAOCG00000005279	pspc1	99	62.292	Amphiprion_ocellaris
ENSFALG00000008750	PSPC1	90	68.247	ENSAPEG00000015927	pspc1	99	62.894	Amphiprion_percula
ENSFALG00000008750	PSPC1	90	56.522	ENSATEG00000004878	pspc1	89	56.846	Anabas_testudineus
ENSFALG00000008750	PSPC1	77	99.010	ENSAPLG00000006246	PSPC1	100	99.010	Anas_platyrhynchos
ENSFALG00000008750	PSPC1	95	57.312	ENSAPLG00000003643	SFPQ	83	59.657	Anas_platyrhynchos
ENSFALG00000008750	PSPC1	88	55.579	ENSACAG00000013307	-	74	52.465	Anolis_carolinensis
ENSFALG00000008750	PSPC1	100	89.118	ENSACAG00000002093	PSPC1	100	87.782	Anolis_carolinensis
ENSFALG00000008750	PSPC1	99	87.572	ENSANAG00000000059	PSPC1	89	94.433	Aotus_nancymaae
ENSFALG00000008750	PSPC1	99	54.275	ENSACLG00000027220	pspc1	99	53.846	Astatotilapia_calliptera
ENSFALG00000008750	PSPC1	99	67.636	ENSAMXG00000036881	pspc1	99	66.605	Astyanax_mexicanus
ENSFALG00000008750	PSPC1	99	87.146	ENSBTAG00000003934	PSPC1	89	94.624	Bos_taurus
ENSFALG00000008750	PSPC1	99	87.763	ENSCJAG00000004554	PSPC1	89	94.647	Callithrix_jacchus
ENSFALG00000008750	PSPC1	99	86.792	ENSCAFG00020002009	PSPC1	89	94.647	Canis_lupus_dingo
ENSFALG00000008750	PSPC1	99	87.146	ENSCHIG00000016708	PSPC1	89	94.624	Capra_hircus
ENSFALG00000008750	PSPC1	76	87.345	ENSTSYG00000032882	PSPC1	93	81.991	Carlito_syrichta
ENSFALG00000008750	PSPC1	99	86.578	ENSCPOG00000000395	PSPC1	90	94.004	Cavia_porcellus
ENSFALG00000008750	PSPC1	99	87.572	ENSCCAG00000033498	PSPC1	89	94.433	Cebus_capucinus
ENSFALG00000008750	PSPC1	99	88.145	ENSCATG00000036434	PSPC1	91	96.364	Cercocebus_atys
ENSFALG00000008750	PSPC1	88	83.906	ENSCLAG00000005241	PSPC1	99	84.267	Chinchilla_lanigera
ENSFALG00000008750	PSPC1	99	81.870	ENSCHOG00000008913	PSPC1	89	89.507	Choloepus_hoffmanni
ENSFALG00000008750	PSPC1	100	93.951	ENSCPBG00000020859	PSPC1	100	93.951	Chrysemys_picta_bellii
ENSFALG00000008750	PSPC1	59	60.129	ENSCSAVG00000003533	-	59	58.599	Ciona_savignyi
ENSFALG00000008750	PSPC1	77	80.788	ENSCANG00000018948	PSPC1	87	96.958	Colobus_angolensis_palliatus
ENSFALG00000008750	PSPC1	99	86.704	ENSCGRG00001018368	Pspc1	99	87.572	Cricetulus_griseus_chok1gshd
ENSFALG00000008750	PSPC1	99	86.704	ENSCGRG00000011724	Pspc1	99	87.572	Cricetulus_griseus_crigri
ENSFALG00000008750	PSPC1	99	60.113	ENSCVAG00000007679	-	86	64.440	Cyprinodon_variegatus
ENSFALG00000008750	PSPC1	99	65.804	ENSDARG00000006621	pspc1	100	69.398	Danio_rerio
ENSFALG00000008750	PSPC1	99	87.572	ENSDNOG00000011078	PSPC1	89	94.433	Dasypus_novemcinctus
ENSFALG00000008750	PSPC1	99	84.673	ENSDORG00000016050	Pspc1	89	91.649	Dipodomys_ordii
ENSFALG00000008750	PSPC1	54	98.020	ENSETEG00000000502	-	72	98.020	Echinops_telfairi
ENSFALG00000008750	PSPC1	53	48.366	ENSEBUG00000010133	pspc1	72	51.273	Eptatretus_burgeri
ENSFALG00000008750	PSPC1	89	57.000	ENSEBUG00000003964	-	65	69.529	Eptatretus_burgeri
ENSFALG00000008750	PSPC1	99	87.713	ENSEASG00005000119	PSPC1	90	94.861	Equus_asinus_asinus
ENSFALG00000008750	PSPC1	99	87.713	ENSECAG00000017286	PSPC1	90	94.861	Equus_caballus
ENSFALG00000008750	PSPC1	87	76.087	ENSEEUG00000011288	-	65	83.942	Erinaceus_europaeus
ENSFALG00000008750	PSPC1	99	67.159	ENSELUG00000003746	pspc1	94	71.939	Esox_lucius
ENSFALG00000008750	PSPC1	99	87.571	ENSFCAG00000027841	PSPC1	89	94.861	Felis_catus
ENSFALG00000008750	PSPC1	99	87.380	ENSFDAG00000002617	PSPC1	91	94.004	Fukomys_damarensis
ENSFALG00000008750	PSPC1	88	66.595	ENSGMOG00000015074	pspc1	89	64.449	Gadus_morhua
ENSFALG00000008750	PSPC1	100	97.538	ENSGALG00000017142	PSPC1	100	97.538	Gallus_gallus
ENSFALG00000008750	PSPC1	74	67.857	ENSGAFG00000006327	pspc1	67	77.231	Gambusia_affinis
ENSFALG00000008750	PSPC1	87	64.946	ENSGACG00000014901	pspc1	95	71.681	Gasterosteus_aculeatus
ENSFALG00000008750	PSPC1	89	58.737	ENSGAGG00000017325	-	69	57.741	Gopherus_agassizii
ENSFALG00000008750	PSPC1	100	95.841	ENSGAGG00000019164	PSPC1	100	93.762	Gopherus_agassizii
ENSFALG00000008750	PSPC1	99	87.763	ENSGGOG00000003414	PSPC1	89	94.433	Gorilla_gorilla
ENSFALG00000008750	PSPC1	99	62.825	ENSHBUG00000001139	pspc1	89	67.782	Haplochromis_burtoni
ENSFALG00000008750	PSPC1	99	87.146	ENSHGLG00000018811	PSPC1	90	94.004	Heterocephalus_glaber_female
ENSFALG00000008750	PSPC1	62	90.549	ENSHGLG00100007962	PSPC1	89	97.945	Heterocephalus_glaber_male
ENSFALG00000008750	PSPC1	72	70.466	ENSHCOG00000013251	pspc1	85	68.653	Hippocampus_comes
ENSFALG00000008750	PSPC1	99	67.784	ENSIPUG00000013192	pspc1	99	66.421	Ictalurus_punctatus
ENSFALG00000008750	PSPC1	99	88.190	ENSSTOG00000026833	PSPC1	89	94.861	Ictidomys_tridecemlineatus
ENSFALG00000008750	PSPC1	99	87.189	ENSJJAG00000018334	Pspc1	89	94.218	Jaculus_jaculus
ENSFALG00000008750	PSPC1	88	53.319	ENSKMAG00000013525	-	84	54.936	Kryptolebias_marmoratus
ENSFALG00000008750	PSPC1	90	64.919	ENSLBEG00000004474	pspc1	77	70.163	Labrus_bergylta
ENSFALG00000008750	PSPC1	99	79.699	ENSLACG00000010762	PSPC1	99	80.038	Latimeria_chalumnae
ENSFALG00000008750	PSPC1	99	78.137	ENSLOCG00000010832	pspc1	99	76.792	Lepisosteus_oculatus
ENSFALG00000008750	PSPC1	99	87.763	ENSLAFG00000010968	PSPC1	89	94.861	Loxodonta_africana
ENSFALG00000008750	PSPC1	99	88.145	ENSMFAG00000032728	PSPC1	92	96.375	Macaca_fascicularis
ENSFALG00000008750	PSPC1	99	88.145	ENSMMUG00000020262	PSPC1	89	96.364	Macaca_mulatta
ENSFALG00000008750	PSPC1	99	88.145	ENSMNEG00000027401	PSPC1	89	94.647	Macaca_nemestrina
ENSFALG00000008750	PSPC1	76	94.750	ENSMLEG00000039043	PSPC1	94	94.750	Mandrillus_leucophaeus
ENSFALG00000008750	PSPC1	90	66.197	ENSMAMG00000004333	pspc1	81	69.752	Mastacembelus_armatus
ENSFALG00000008750	PSPC1	99	54.275	ENSMZEG00005005726	pspc1	99	53.846	Maylandia_zebra
ENSFALG00000008750	PSPC1	77	98.522	ENSMGAG00000015134	PSPC1	100	98.522	Meleagris_gallopavo
ENSFALG00000008750	PSPC1	88	81.607	ENSMAUG00000021067	Pspc1	98	82.468	Mesocricetus_auratus
ENSFALG00000008750	PSPC1	88	94.433	ENSMICG00000013970	PSPC1	89	94.433	Microcebus_murinus
ENSFALG00000008750	PSPC1	99	87.954	ENSMOCG00000006060	Pspc1	99	87.954	Microtus_ochrogaster
ENSFALG00000008750	PSPC1	93	43.462	ENSMMOG00000004352	pspc1	61	52.786	Mola_mola
ENSFALG00000008750	PSPC1	92	86.392	ENSMODG00000008029	PSPC1	78	86.392	Monodelphis_domestica
ENSFALG00000008750	PSPC1	88	67.880	ENSMALG00000008914	pspc1	89	66.597	Monopterus_albus
ENSFALG00000008750	PSPC1	99	87.763	MGP_CAROLIEiJ_G0019341	Pspc1	99	87.763	Mus_caroli
ENSFALG00000008750	PSPC1	99	87.954	ENSMUSG00000021938	Pspc1	99	87.954	Mus_musculus
ENSFALG00000008750	PSPC1	99	87.763	MGP_PahariEiJ_G0030359	Pspc1	99	87.763	Mus_pahari
ENSFALG00000008750	PSPC1	99	88.145	MGP_SPRETEiJ_G0020232	Pspc1	99	88.145	Mus_spretus
ENSFALG00000008750	PSPC1	99	87.382	ENSMPUG00000013347	PSPC1	89	94.647	Mustela_putorius_furo
ENSFALG00000008750	PSPC1	99	87.030	ENSMLUG00000017663	PSPC1	90	94.043	Myotis_lucifugus
ENSFALG00000008750	PSPC1	99	87.763	ENSNGAG00000011271	Pspc1	89	94.218	Nannospalax_galili
ENSFALG00000008750	PSPC1	74	60.759	ENSNBRG00000014059	pspc1	78	68.750	Neolamprologus_brichardi
ENSFALG00000008750	PSPC1	88	94.647	ENSNLEG00000001294	PSPC1	89	94.647	Nomascus_leucogenys
ENSFALG00000008750	PSPC1	84	81.961	ENSMEUG00000000476	PSPC1	83	81.961	Notamacropus_eugenii
ENSFALG00000008750	PSPC1	100	76.766	ENSODEG00000019012	-	89	84.277	Octodon_degus
ENSFALG00000008750	PSPC1	99	75.992	ENSODEG00000007817	-	89	82.013	Octodon_degus
ENSFALG00000008750	PSPC1	99	63.451	ENSONIG00000012010	pspc1	89	66.803	Oreochromis_niloticus
ENSFALG00000008750	PSPC1	76	94.000	ENSOANG00000009017	-	100	94.000	Ornithorhynchus_anatinus
ENSFALG00000008750	PSPC1	88	68.240	ENSOANG00000011381	-	92	67.167	Ornithorhynchus_anatinus
ENSFALG00000008750	PSPC1	88	94.647	ENSOCUG00000006153	PSPC1	89	94.647	Oryctolagus_cuniculus
ENSFALG00000008750	PSPC1	89	68.553	ENSORLG00000004232	-	89	65.298	Oryzias_latipes
ENSFALG00000008750	PSPC1	89	68.763	ENSORLG00020000578	PSPC1	89	65.503	Oryzias_latipes_hni
ENSFALG00000008750	PSPC1	89	68.763	ENSORLG00015017480	pspc1	89	65.298	Oryzias_latipes_hsok
ENSFALG00000008750	PSPC1	99	87.786	ENSOGAG00000012643	PSPC1	89	94.861	Otolemur_garnettii
ENSFALG00000008750	PSPC1	87	94.348	ENSOARG00000014163	PSPC1	95	91.957	Ovis_aries
ENSFALG00000008750	PSPC1	89	87.660	ENSPPAG00000009836	PSPC1	93	96.960	Pan_paniscus
ENSFALG00000008750	PSPC1	99	87.571	ENSPPRG00000008833	PSPC1	89	94.861	Panthera_pardus
ENSFALG00000008750	PSPC1	76	94.750	ENSPTIG00000016917	PSPC1	84	94.750	Panthera_tigris_altaica
ENSFALG00000008750	PSPC1	92	87.860	ENSPTRG00000005677	PSPC1	87	95.116	Pan_troglodytes
ENSFALG00000008750	PSPC1	99	88.145	ENSPANG00000001992	PSPC1	91	96.375	Papio_anubis
ENSFALG00000008750	PSPC1	93	71.227	ENSPKIG00000003578	pspc1	89	74.105	Paramormyrops_kingsleyae
ENSFALG00000008750	PSPC1	100	94.329	ENSPSIG00000005168	PSPC1	100	92.628	Pelodiscus_sinensis
ENSFALG00000008750	PSPC1	60	69.841	ENSPMGG00000015135	pspc1	83	71.429	Periophthalmus_magnuspinnatus
ENSFALG00000008750	PSPC1	99	87.763	ENSPEMG00000015214	Pspc1	99	87.763	Peromyscus_maniculatus_bairdii
ENSFALG00000008750	PSPC1	54	45.361	ENSPMAG00000004618	pspc1	85	45.907	Petromyzon_marinus
ENSFALG00000008750	PSPC1	99	86.807	ENSPCIG00000017680	PSPC1	99	86.807	Phascolarctos_cinereus
ENSFALG00000008750	PSPC1	92	65.795	ENSPFOG00000003362	pspc1	88	67.234	Poecilia_formosa
ENSFALG00000008750	PSPC1	66	68.091	ENSPLAG00000004407	-	50	68.091	Poecilia_latipinna
ENSFALG00000008750	PSPC1	92	65.795	ENSPLAG00000011540	pspc1	87	67.021	Poecilia_latipinna
ENSFALG00000008750	PSPC1	68	66.758	ENSPMEG00000001025	-	50	68.091	Poecilia_mexicana
ENSFALG00000008750	PSPC1	92	65.392	ENSPMEG00000008322	pspc1	87	66.596	Poecilia_mexicana
ENSFALG00000008750	PSPC1	99	61.781	ENSPREG00000007786	pspc1	87	66.596	Poecilia_reticulata
ENSFALG00000008750	PSPC1	88	94.421	ENSPPYG00000005186	PSPC1	89	94.218	Pongo_abelii
ENSFALG00000008750	PSPC1	66	96.341	ENSPCAG00000008314	-	56	96.341	Procavia_capensis
ENSFALG00000008750	PSPC1	99	83.206	ENSPCOG00000014364	PSPC1	89	89.722	Propithecus_coquereli
ENSFALG00000008750	PSPC1	99	86.424	ENSPVAG00000005036	PSPC1	90	92.719	Pteropus_vampyrus
ENSFALG00000008750	PSPC1	99	54.766	ENSPNYG00000008893	pspc1	89	58.368	Pundamilia_nyererei
ENSFALG00000008750	PSPC1	99	67.159	ENSPNAG00000016511	pspc1	99	67.412	Pygocentrus_nattereri
ENSFALG00000008750	PSPC1	99	87.380	ENSRNOG00000020782	Pspc1	99	87.380	Rattus_norvegicus
ENSFALG00000008750	PSPC1	88	94.647	ENSRBIG00000036057	PSPC1	96	94.647	Rhinopithecus_bieti
ENSFALG00000008750	PSPC1	99	87.954	ENSRROG00000036334	PSPC1	89	94.647	Rhinopithecus_roxellana
ENSFALG00000008750	PSPC1	78	84.058	ENSSBOG00000028172	PSPC1	90	92.419	Saimiri_boliviensis_boliviensis
ENSFALG00000008750	PSPC1	99	81.714	ENSSHAG00000004696	PSPC1	99	81.714	Sarcophilus_harrisii
ENSFALG00000008750	PSPC1	80	77.934	ENSSFOG00015001395	pspc1	99	73.795	Scleropages_formosus
ENSFALG00000008750	PSPC1	90	65.567	ENSSMAG00000001761	pspc1	82	75.758	Scophthalmus_maximus
ENSFALG00000008750	PSPC1	88	67.814	ENSSDUG00000010651	pspc1	87	66.803	Seriola_dumerili
ENSFALG00000008750	PSPC1	87	63.283	ENSSLDG00000004284	pspc1	99	54.128	Seriola_lalandi_dorsalis
ENSFALG00000008750	PSPC1	88	87.580	ENSSARG00000000888	PSPC1	90	87.580	Sorex_araneus
ENSFALG00000008750	PSPC1	88	54.352	ENSSPUG00000001136	-	60	56.490	Sphenodon_punctatus
ENSFALG00000008750	PSPC1	100	81.096	ENSSPUG00000008550	PSPC1	100	81.285	Sphenodon_punctatus
ENSFALG00000008750	PSPC1	89	66.934	ENSSPAG00000001921	pspc1	77	72.577	Stegastes_partitus
ENSFALG00000008750	PSPC1	99	86.867	ENSSSCG00000009569	PSPC1	89	94.635	Sus_scrofa
ENSFALG00000008750	PSPC1	88	100.000	ENSTGUG00000011295	PSPC1	100	100.000	Taeniopygia_guttata
ENSFALG00000008750	PSPC1	90	62.372	ENSTRUG00000011335	pspc1	91	61.983	Takifugu_rubripes
ENSFALG00000008750	PSPC1	88	64.882	ENSTNIG00000010358	pspc1	88	62.661	Tetraodon_nigroviridis
ENSFALG00000008750	PSPC1	88	74.304	ENSTBEG00000002361	PSPC1	89	72.304	Tupaia_belangeri
ENSFALG00000008750	PSPC1	99	87.500	ENSTTRG00000003343	PSPC1	90	94.635	Tursiops_truncatus
ENSFALG00000008750	PSPC1	66	87.143	ENSUAMG00000012309	PSPC1	84	97.603	Ursus_americanus
ENSFALG00000008750	PSPC1	88	94.433	ENSUMAG00000013993	PSPC1	96	94.433	Ursus_maritimus
ENSFALG00000008750	PSPC1	76	94.750	ENSVPAG00000010029	PSPC1	100	94.750	Vicugna_pacos
ENSFALG00000008750	PSPC1	99	86.792	ENSVVUG00000006414	PSPC1	89	94.647	Vulpes_vulpes
ENSFALG00000008750	PSPC1	74	67.259	ENSXCOG00000017438	pspc1	80	74.336	Xiphophorus_couchianus
ENSFALG00000008750	PSPC1	74	67.513	ENSXMAG00000007929	pspc1	80	74.631	Xiphophorus_maculatus