EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFALG00000009312 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Minus strand
Length: 37312 bases
Position: chrJH603426.1:143551-180862
Accession: 9962
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000009727	UPF1_Zn_bind	PF09416.10	3e-74	1	1
ENSFALP00000009727	ResIII	PF04851.15	1.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000009767	UPF1-201	5578	-	ENSFALP00000009727	1088 (aa)	-	U3K3X3

Gene Model

Click here to download ENSFALG00000009312's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000009312's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000009312	UPF1	99	96.756	ENSG00000005007	UPF1	96	96.756	Homo_sapiens
ENSFALG00000009312	UPF1	96	93.251	ENSAPOG00000023773	upf1	95	93.441	Acanthochromis_polyacanthus
ENSFALG00000009312	UPF1	96	94.566	ENSAPOG00000010916	-	95	94.662	Acanthochromis_polyacanthus
ENSFALG00000009312	UPF1	98	96.303	ENSAMEG00000011474	UPF1	96	96.303	Ailuropoda_melanoleuca
ENSFALG00000009312	UPF1	96	93.410	ENSACIG00000019949	upf1	95	93.441	Amphilophus_citrinellus
ENSFALG00000009312	UPF1	95	94.655	ENSACIG00000010985	-	100	94.752	Amphilophus_citrinellus
ENSFALG00000009312	UPF1	96	94.471	ENSAOCG00000006352	-	100	92.144	Amphiprion_ocellaris
ENSFALG00000009312	UPF1	96	92.741	ENSAOCG00000018519	upf1	95	93.415	Amphiprion_ocellaris
ENSFALG00000009312	UPF1	96	94.471	ENSAPEG00000006292	-	100	92.144	Amphiprion_percula
ENSFALG00000009312	UPF1	96	92.741	ENSAPEG00000016344	upf1	95	93.415	Amphiprion_percula
ENSFALG00000009312	UPF1	96	92.019	ENSATEG00000017867	upf1	95	93.052	Anabas_testudineus
ENSFALG00000009312	UPF1	96	94.662	ENSATEG00000016606	-	95	94.757	Anabas_testudineus
ENSFALG00000009312	UPF1	96	98.299	ENSAPLG00000009175	UPF1	100	98.299	Anas_platyrhynchos
ENSFALG00000009312	UPF1	98	94.450	ENSANAG00000024107	UPF1	97	94.450	Aotus_nancymaae
ENSFALG00000009312	UPF1	96	93.219	ENSACLG00000007181	upf1	95	93.251	Astatotilapia_calliptera
ENSFALG00000009312	UPF1	96	94.185	ENSACLG00000022630	-	95	94.185	Astatotilapia_calliptera
ENSFALG00000009312	UPF1	96	95.048	ENSAMXG00000042187	upf1	95	95.619	Astyanax_mexicanus
ENSFALG00000009312	UPF1	99	96.125	ENSBTAG00000020922	UPF1	96	96.125	Bos_taurus
ENSFALG00000009312	UPF1	84	53.506	WBGene00004880	smg-2	90	51.179	Caenorhabditis_elegans
ENSFALG00000009312	UPF1	99	95.780	ENSCJAG00000019627	UPF1	96	95.780	Callithrix_jacchus
ENSFALG00000009312	UPF1	99	95.872	ENSCAFG00000014578	UPF1	96	95.872	Canis_familiaris
ENSFALG00000009312	UPF1	99	96.849	ENSCAFG00020012347	UPF1	96	96.849	Canis_lupus_dingo
ENSFALG00000009312	UPF1	99	97.111	ENSCHIG00000011018	UPF1	96	97.111	Capra_hircus
ENSFALG00000009312	UPF1	99	95.660	ENSTSYG00000008877	UPF1	99	95.660	Carlito_syrichta
ENSFALG00000009312	UPF1	96	97.156	ENSCAPG00000005758	UPF1	95	97.156	Cavia_aperea
ENSFALG00000009312	UPF1	96	97.243	ENSCPOG00000025463	UPF1	94	97.243	Cavia_porcellus
ENSFALG00000009312	UPF1	99	96.756	ENSCCAG00000032175	UPF1	96	96.756	Cebus_capucinus
ENSFALG00000009312	UPF1	98	95.911	ENSCATG00000040306	UPF1	98	95.911	Cercocebus_atys
ENSFALG00000009312	UPF1	98	96.111	ENSCLAG00000004037	UPF1	99	97.346	Chinchilla_lanigera
ENSFALG00000009312	UPF1	99	96.664	ENSCSAG00000005276	UPF1	96	96.664	Chlorocebus_sabaeus
ENSFALG00000009312	UPF1	98	97.484	ENSCPBG00000012513	UPF1	96	97.484	Chrysemys_picta_bellii
ENSFALG00000009312	UPF1	70	83.377	ENSCING00000021399	-	91	83.377	Ciona_intestinalis
ENSFALG00000009312	UPF1	95	74.095	ENSCSAVG00000006533	-	95	73.754	Ciona_savignyi
ENSFALG00000009312	UPF1	98	96.007	ENSCANG00000029819	UPF1	99	96.007	Colobus_angolensis_palliatus
ENSFALG00000009312	UPF1	99	96.369	ENSCGRG00001021067	Upf1	96	96.369	Cricetulus_griseus_chok1gshd
ENSFALG00000009312	UPF1	98	95.362	ENSCGRG00000013480	Upf1	99	95.362	Cricetulus_griseus_crigri
ENSFALG00000009312	UPF1	96	94.752	ENSCSEG00000016159	-	95	94.752	Cynoglossus_semilaevis
ENSFALG00000009312	UPF1	96	87.893	ENSCSEG00000017239	upf1	95	87.798	Cynoglossus_semilaevis
ENSFALG00000009312	UPF1	96	93.994	ENSCVAG00000010561	upf1	95	93.994	Cyprinodon_variegatus
ENSFALG00000009312	UPF1	96	94.952	ENSDARG00000016302	upf1	95	95.524	Danio_rerio
ENSFALG00000009312	UPF1	96	94.245	ENSDORG00000009984	Upf1	95	94.245	Dipodomys_ordii
ENSFALG00000009312	UPF1	80	74.743	FBgn0030354	Upf1	78	71.383	Drosophila_melanogaster
ENSFALG00000009312	UPF1	50	89.725	ENSEBUG00000010069	upf1	90	88.949	Eptatretus_burgeri
ENSFALG00000009312	UPF1	99	96.840	ENSEASG00005006549	UPF1	96	96.840	Equus_asinus_asinus
ENSFALG00000009312	UPF1	99	96.840	ENSECAG00000010639	UPF1	96	96.840	Equus_caballus
ENSFALG00000009312	UPF1	96	92.133	ENSELUG00000020917	upf1	95	92.417	Esox_lucius
ENSFALG00000009312	UPF1	96	93.939	ENSELUG00000012916	-	95	93.945	Esox_lucius
ENSFALG00000009312	UPF1	99	95.963	ENSFCAG00000009757	UPF1	96	95.963	Felis_catus
ENSFALG00000009312	UPF1	98	95.733	ENSFDAG00000014816	UPF1	99	97.251	Fukomys_damarensis
ENSFALG00000009312	UPF1	96	90.341	ENSFHEG00000006428	upf1	95	90.274	Fundulus_heteroclitus
ENSFALG00000009312	UPF1	88	93.842	ENSFHEG00000016276	-	96	94.074	Fundulus_heteroclitus
ENSFALG00000009312	UPF1	96	93.019	ENSGMOG00000007541	upf1	95	93.585	Gadus_morhua
ENSFALG00000009312	UPF1	99	97.400	ENSGALG00000003220	UPF1	96	97.400	Gallus_gallus
ENSFALG00000009312	UPF1	64	95.396	ENSGAFG00000015443	-	85	95.396	Gambusia_affinis
ENSFALG00000009312	UPF1	96	93.989	ENSGAFG00000004831	upf1	95	94.090	Gambusia_affinis
ENSFALG00000009312	UPF1	98	97.753	ENSGAGG00000022217	UPF1	96	97.753	Gopherus_agassizii
ENSFALG00000009312	UPF1	96	98.282	ENSGGOG00000002608	UPF1	99	98.282	Gorilla_gorilla
ENSFALG00000009312	UPF1	83	100.000	ENSHBUG00000008939	upf1	90	100.000	Haplochromis_burtoni
ENSFALG00000009312	UPF1	82	87.356	ENSHBUG00000014694	upf1	90	87.356	Haplochromis_burtoni
ENSFALG00000009312	UPF1	96	97.062	ENSHGLG00000010900	UPF1	93	97.062	Heterocephalus_glaber_female
ENSFALG00000009312	UPF1	99	93.126	ENSHGLG00100005904	UPF1	99	93.126	Heterocephalus_glaber_male
ENSFALG00000009312	UPF1	96	93.416	ENSHCOG00000008918	upf1	100	93.642	Hippocampus_comes
ENSFALG00000009312	UPF1	96	95.238	ENSIPUG00000005108	UPF1	95	95.714	Ictalurus_punctatus
ENSFALG00000009312	UPF1	99	96.756	ENSSTOG00000009196	UPF1	96	96.756	Ictidomys_tridecemlineatus
ENSFALG00000009312	UPF1	99	95.014	ENSJJAG00000023151	Upf1	96	95.014	Jaculus_jaculus
ENSFALG00000009312	UPF1	96	94.471	ENSKMAG00000004962	upf1	95	94.471	Kryptolebias_marmoratus
ENSFALG00000009312	UPF1	97	93.573	ENSLBEG00000027848	-	96	93.667	Labrus_bergylta
ENSFALG00000009312	UPF1	96	91.439	ENSLBEG00000014862	upf1	95	92.850	Labrus_bergylta
ENSFALG00000009312	UPF1	64	97.564	ENSLACG00000008482	UPF1	100	97.564	Latimeria_chalumnae
ENSFALG00000009312	UPF1	96	97.328	ENSLOCG00000002072	upf1	95	97.328	Lepisosteus_oculatus
ENSFALG00000009312	UPF1	99	95.404	ENSLAFG00000014963	UPF1	96	95.404	Loxodonta_africana
ENSFALG00000009312	UPF1	99	95.780	ENSMFAG00000037748	UPF1	96	95.933	Macaca_fascicularis
ENSFALG00000009312	UPF1	99	95.853	ENSMMUG00000023286	UPF1	96	95.853	Macaca_mulatta
ENSFALG00000009312	UPF1	99	95.780	ENSMNEG00000000046	UPF1	96	95.933	Macaca_nemestrina
ENSFALG00000009312	UPF1	96	97.346	ENSMLEG00000028404	UPF1	99	97.346	Mandrillus_leucophaeus
ENSFALG00000009312	UPF1	96	93.524	ENSMAMG00000006231	-	95	94.095	Mastacembelus_armatus
ENSFALG00000009312	UPF1	96	91.643	ENSMAMG00000006229	upf1	95	92.864	Mastacembelus_armatus
ENSFALG00000009312	UPF1	96	94.185	ENSMZEG00005016386	-	95	94.185	Maylandia_zebra
ENSFALG00000009312	UPF1	96	91.651	ENSMZEG00005003489	upf1	95	93.019	Maylandia_zebra
ENSFALG00000009312	UPF1	96	97.822	ENSMGAG00000004745	UPF1	100	97.822	Meleagris_gallopavo
ENSFALG00000009312	UPF1	96	96.777	ENSMAUG00000011398	Upf1	95	96.777	Mesocricetus_auratus
ENSFALG00000009312	UPF1	99	96.571	ENSMICG00000001659	UPF1	96	96.571	Microcebus_murinus
ENSFALG00000009312	UPF1	96	96.777	ENSMOCG00000005699	Upf1	94	96.777	Microtus_ochrogaster
ENSFALG00000009312	UPF1	96	92.455	ENSMMOG00000007881	upf1	95	93.130	Mola_mola
ENSFALG00000009312	UPF1	96	92.190	ENSMMOG00000007537	-	99	92.286	Mola_mola
ENSFALG00000009312	UPF1	97	98.577	ENSMODG00000003689	UPF1	96	98.577	Monodelphis_domestica
ENSFALG00000009312	UPF1	96	93.219	ENSMALG00000000144	upf1	95	93.219	Monopterus_albus
ENSFALG00000009312	UPF1	96	93.067	ENSMALG00000018100	-	95	93.162	Monopterus_albus
ENSFALG00000009312	UPF1	99	96.276	MGP_CAROLIEiJ_G0031142	Upf1	96	96.276	Mus_caroli
ENSFALG00000009312	UPF1	99	96.276	ENSMUSG00000058301	Upf1	96	96.276	Mus_musculus
ENSFALG00000009312	UPF1	99	96.276	MGP_PahariEiJ_G0021607	Upf1	96	96.276	Mus_pahari
ENSFALG00000009312	UPF1	99	96.276	MGP_SPRETEiJ_G0032260	Upf1	96	96.276	Mus_spretus
ENSFALG00000009312	UPF1	99	96.849	ENSMPUG00000015516	UPF1	96	96.849	Mustela_putorius_furo
ENSFALG00000009312	UPF1	99	96.571	ENSMLUG00000012122	UPF1	96	96.571	Myotis_lucifugus
ENSFALG00000009312	UPF1	96	96.682	ENSNGAG00000024107	Upf1	93	96.682	Nannospalax_galili
ENSFALG00000009312	UPF1	95	93.611	ENSNBRG00000022069	-	100	93.611	Neolamprologus_brichardi
ENSFALG00000009312	UPF1	96	91.404	ENSNBRG00000000670	upf1	95	91.445	Neolamprologus_brichardi
ENSFALG00000009312	UPF1	96	91.564	ENSNLEG00000006062	UPF1	99	91.564	Nomascus_leucogenys
ENSFALG00000009312	UPF1	79	94.912	ENSMEUG00000014146	-	77	94.912	Notamacropus_eugenii
ENSFALG00000009312	UPF1	96	90.613	ENSOPRG00000014018	UPF1	99	90.613	Ochotona_princeps
ENSFALG00000009312	UPF1	98	95.829	ENSODEG00000012426	UPF1	96	95.829	Octodon_degus
ENSFALG00000009312	UPF1	96	94.280	ENSONIG00000012729	-	95	94.280	Oreochromis_niloticus
ENSFALG00000009312	UPF1	96	91.932	ENSONIG00000010452	upf1	95	93.302	Oreochromis_niloticus
ENSFALG00000009312	UPF1	99	95.588	ENSOANG00000004568	UPF1	96	95.588	Ornithorhynchus_anatinus
ENSFALG00000009312	UPF1	96	94.185	ENSORLG00000008453	upf1	95	94.185	Oryzias_latipes
ENSFALG00000009312	UPF1	96	94.185	ENSORLG00020014758	upf1	95	94.185	Oryzias_latipes_hni
ENSFALG00000009312	UPF1	96	94.185	ENSORLG00015010165	upf1	100	90.398	Oryzias_latipes_hsok
ENSFALG00000009312	UPF1	96	94.185	ENSOMEG00000003665	upf1	95	94.185	Oryzias_melastigma
ENSFALG00000009312	UPF1	99	96.849	ENSOGAG00000012866	UPF1	96	96.849	Otolemur_garnettii
ENSFALG00000009312	UPF1	94	95.407	ENSOARG00000010739	UPF1	96	95.407	Ovis_aries
ENSFALG00000009312	UPF1	99	94.886	ENSPPAG00000043884	UPF1	99	94.886	Pan_paniscus
ENSFALG00000009312	UPF1	99	95.963	ENSPPRG00000023470	UPF1	96	95.963	Panthera_pardus
ENSFALG00000009312	UPF1	96	96.463	ENSPTIG00000010159	UPF1	99	96.463	Panthera_tigris_altaica
ENSFALG00000009312	UPF1	99	95.780	ENSPTRG00000010721	UPF1	96	95.933	Pan_troglodytes
ENSFALG00000009312	UPF1	99	95.780	ENSPANG00000008847	UPF1	96	95.933	Papio_anubis
ENSFALG00000009312	UPF1	86	97.257	ENSPKIG00000006069	upf1	91	97.257	Paramormyrops_kingsleyae
ENSFALG00000009312	UPF1	70	98.825	ENSPSIG00000009491	UPF1	100	98.825	Pelodiscus_sinensis
ENSFALG00000009312	UPF1	96	90.892	ENSPMGG00000017327	upf1	95	91.098	Periophthalmus_magnuspinnatus
ENSFALG00000009312	UPF1	96	96.777	ENSPEMG00000001085	Upf1	94	96.777	Peromyscus_maniculatus_bairdii
ENSFALG00000009312	UPF1	97	88.660	ENSPMAG00000001206	upf1	95	88.868	Petromyzon_marinus
ENSFALG00000009312	UPF1	99	97.588	ENSPCIG00000006156	UPF1	96	97.588	Phascolarctos_cinereus
ENSFALG00000009312	UPF1	96	94.084	ENSPLAG00000016232	-	95	94.185	Poecilia_latipinna
ENSFALG00000009312	UPF1	96	91.682	ENSPLAG00000018155	-	95	91.682	Poecilia_latipinna
ENSFALG00000009312	UPF1	96	92.095	ENSPMEG00000011443	-	95	92.095	Poecilia_mexicana
ENSFALG00000009312	UPF1	96	93.994	ENSPMEG00000016319	-	95	94.095	Poecilia_mexicana
ENSFALG00000009312	UPF1	96	91.966	ENSPREG00000009940	upf1	95	91.966	Poecilia_reticulata
ENSFALG00000009312	UPF1	96	93.893	ENSPREG00000011247	-	95	93.994	Poecilia_reticulata
ENSFALG00000009312	UPF1	99	90.642	ENSPPYG00000009752	UPF1	96	90.642	Pongo_abelii
ENSFALG00000009312	UPF1	67	99.664	ENSPCAG00000012962	UPF1	65	99.664	Procavia_capensis
ENSFALG00000009312	UPF1	99	95.849	ENSPCOG00000023813	UPF1	96	95.849	Propithecus_coquereli
ENSFALG00000009312	UPF1	67	100.000	ENSPVAG00000003183	UPF1	64	100.000	Pteropus_vampyrus
ENSFALG00000009312	UPF1	96	91.651	ENSPNYG00000003694	upf1	95	93.019	Pundamilia_nyererei
ENSFALG00000009312	UPF1	96	94.185	ENSPNYG00000016731	-	95	94.185	Pundamilia_nyererei
ENSFALG00000009312	UPF1	96	95.048	ENSPNAG00000025614	upf1	95	95.619	Pygocentrus_nattereri
ENSFALG00000009312	UPF1	99	96.276	ENSRNOG00000020134	Upf1	96	96.276	Rattus_norvegicus
ENSFALG00000009312	UPF1	96	94.976	ENSRBIG00000013894	UPF1	98	98.687	Rhinopithecus_bieti
ENSFALG00000009312	UPF1	98	96.007	ENSRROG00000040935	UPF1	98	98.687	Rhinopithecus_roxellana
ENSFALG00000009312	UPF1	77	55.713	YMR080C	NAM7	87	55.713	Saccharomyces_cerevisiae
ENSFALG00000009312	UPF1	98	95.560	ENSSBOG00000023632	UPF1	98	95.560	Saimiri_boliviensis_boliviensis
ENSFALG00000009312	UPF1	96	97.729	ENSSHAG00000010499	UPF1	100	97.729	Sarcophilus_harrisii
ENSFALG00000009312	UPF1	96	97.331	ENSSFOG00015021095	upf1	100	97.235	Scleropages_formosus
ENSFALG00000009312	UPF1	96	90.969	ENSSMAG00000005055	upf1	95	92.105	Scophthalmus_maximus
ENSFALG00000009312	UPF1	96	94.286	ENSSMAG00000021018	-	95	94.381	Scophthalmus_maximus
ENSFALG00000009312	UPF1	96	91.925	ENSSDUG00000013320	upf1	95	93.146	Seriola_dumerili
ENSFALG00000009312	UPF1	96	94.571	ENSSDUG00000009629	-	95	94.667	Seriola_dumerili
ENSFALG00000009312	UPF1	96	92.796	ENSSLDG00000020868	upf1	95	93.377	Seriola_lalandi_dorsalis
ENSFALG00000009312	UPF1	96	94.571	ENSSLDG00000006878	-	95	94.667	Seriola_lalandi_dorsalis
ENSFALG00000009312	UPF1	98	97.570	ENSSPUG00000010538	UPF1	96	97.570	Sphenodon_punctatus
ENSFALG00000009312	UPF1	96	94.466	ENSSPAG00000011521	-	95	94.466	Stegastes_partitus
ENSFALG00000009312	UPF1	96	91.031	ENSSPAG00000000003	upf1	95	91.056	Stegastes_partitus
ENSFALG00000009312	UPF1	99	97.018	ENSSSCG00000039301	UPF1	99	98.375	Sus_scrofa
ENSFALG00000009312	UPF1	78	91.254	ENSTGUG00000001057	UPF1	93	93.887	Taeniopygia_guttata
ENSFALG00000009312	UPF1	96	93.416	ENSTRUG00000005131	-	95	93.511	Takifugu_rubripes
ENSFALG00000009312	UPF1	96	93.034	ENSTRUG00000000150	upf1	95	93.034	Takifugu_rubripes
ENSFALG00000009312	UPF1	96	94.185	ENSTTRG00000011544	UPF1	94	94.185	Tursiops_truncatus
ENSFALG00000009312	UPF1	99	96.849	ENSUAMG00000007093	UPF1	96	96.849	Ursus_americanus
ENSFALG00000009312	UPF1	98	97.366	ENSUMAG00000006652	UPF1	99	99.067	Ursus_maritimus
ENSFALG00000009312	UPF1	99	96.849	ENSVVUG00000007797	UPF1	96	96.849	Vulpes_vulpes
ENSFALG00000009312	UPF1	96	83.600	ENSXETG00000013602	upf1	93	83.600	Xenopus_tropicalis
ENSFALG00000009312	UPF1	93	91.691	ENSXCOG00000015275	-	91	91.691	Xiphophorus_couchianus
ENSFALG00000009312	UPF1	95	94.300	ENSXCOG00000005764	-	100	94.402	Xiphophorus_couchianus
ENSFALG00000009312	UPF1	96	91.889	ENSXMAG00000001703	-	95	91.889	Xiphophorus_maculatus
ENSFALG00000009312	UPF1	96	93.804	ENSXMAG00000002540	-	95	93.905	Xiphophorus_maculatus