EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFALG00000009478 (Gene tree)
Gene ID: -
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 9382 bases
Position: chrJH603426.1:516839-526220
Accession: 17259
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000009882	LSM	PF01423.22	4.4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000009922	LSM4-201	1584	-	ENSFALP00000009882	138 (aa)	-	U3K4C8

Gene Model

Click here to download ENSFALG00000009478's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000009478's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFALG00000009478	LSM4	52	34.722	ENSFALG00000007303	SNRPD3	56	34.722

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000009478	LSM4	99	89.855	ENSG00000130520	LSM4	99	81.159	Homo_sapiens
ENSFALG00000009478	LSM4	71	97.959	ENSAPOG00000005643	lsm4	58	100.000	Acanthochromis_polyacanthus
ENSFALG00000009478	LSM4	100	89.928	ENSAMEG00000011162	LSM4	95	81.295	Ailuropoda_melanoleuca
ENSFALG00000009478	LSM4	71	97.959	ENSAOCG00000006414	lsm4	59	100.000	Amphiprion_ocellaris
ENSFALG00000009478	LSM4	71	97.959	ENSAPEG00000006238	lsm4	58	100.000	Amphiprion_percula
ENSFALG00000009478	LSM4	71	97.959	ENSATEG00000016559	lsm4	57	100.000	Anabas_testudineus
ENSFALG00000009478	LSM4	99	89.855	ENSANAG00000034659	LSM4	99	81.159	Aotus_nancymaae
ENSFALG00000009478	LSM4	96	83.453	ENSACLG00000022738	lsm4	59	100.000	Astatotilapia_calliptera
ENSFALG00000009478	LSM4	96	90.977	ENSAMXG00000016932	lsm4	94	90.977	Astyanax_mexicanus
ENSFALG00000009478	LSM4	100	89.928	ENSBTAG00000008578	LSM4	100	81.295	Bos_taurus
ENSFALG00000009478	LSM4	59	76.829	WBGene00003078	lsm-4	67	76.829	Caenorhabditis_elegans
ENSFALG00000009478	LSM4	99	89.855	ENSCJAG00000014171	LSM4	99	81.159	Callithrix_jacchus
ENSFALG00000009478	LSM4	63	98.851	ENSCAFG00000014900	LSM4	90	81.022	Canis_familiaris
ENSFALG00000009478	LSM4	99	89.855	ENSCAFG00020012137	LSM4	99	81.159	Canis_lupus_dingo
ENSFALG00000009478	LSM4	100	89.928	ENSCHIG00000010928	LSM4	92	81.295	Capra_hircus
ENSFALG00000009478	LSM4	99	89.130	ENSTSYG00000030906	LSM4	99	80.435	Carlito_syrichta
ENSFALG00000009478	LSM4	99	88.406	ENSCAPG00000014140	LSM4	99	80.435	Cavia_aperea
ENSFALG00000009478	LSM4	99	88.406	ENSCPOG00000024117	LSM4	99	80.435	Cavia_porcellus
ENSFALG00000009478	LSM4	99	89.855	ENSCCAG00000036308	LSM4	99	81.159	Cebus_capucinus
ENSFALG00000009478	LSM4	99	89.855	ENSCATG00000029311	LSM4	99	81.159	Cercocebus_atys
ENSFALG00000009478	LSM4	99	88.406	ENSCLAG00000010828	LSM4	99	78.986	Chinchilla_lanigera
ENSFALG00000009478	LSM4	99	89.855	ENSCSAG00000005370	LSM4	99	81.159	Chlorocebus_sabaeus
ENSFALG00000009478	LSM4	99	99.270	ENSCPBG00000012925	LSM4	99	99.270	Chrysemys_picta_bellii
ENSFALG00000009478	LSM4	62	91.860	ENSCING00000007519	-	69	93.103	Ciona_intestinalis
ENSFALG00000009478	LSM4	62	91.860	ENSCSAVG00000008596	-	70	93.103	Ciona_savignyi
ENSFALG00000009478	LSM4	99	89.855	ENSCANG00000043686	LSM4	99	81.159	Colobus_angolensis_palliatus
ENSFALG00000009478	LSM4	99	75.182	ENSCGRG00001014436	Lsm4	99	75.182	Cricetulus_griseus_chok1gshd
ENSFALG00000009478	LSM4	99	75.182	ENSCGRG00000009398	Lsm4	100	75.182	Cricetulus_griseus_crigri
ENSFALG00000009478	LSM4	70	96.875	ENSCSEG00000016127	lsm4	94	85.821	Cynoglossus_semilaevis
ENSFALG00000009478	LSM4	86	80.992	ENSCVAG00000021828	lsm4	56	98.630	Cyprinodon_variegatus
ENSFALG00000009478	LSM4	96	88.148	ENSCVAG00000010601	lsm4	61	98.851	Cyprinodon_variegatus
ENSFALG00000009478	LSM4	98	85.211	ENSDARG00000023852	lsm4	98	85.000	Danio_rerio
ENSFALG00000009478	LSM4	99	88.406	ENSDORG00000024225	Lsm4	99	79.710	Dipodomys_ordii
ENSFALG00000009478	LSM4	70	81.250	FBgn0032240	CG17768	56	87.356	Drosophila_melanogaster
ENSFALG00000009478	LSM4	89	76.613	ENSETEG00000007762	-	100	79.032	Echinops_telfairi
ENSFALG00000009478	LSM4	54	92.000	ENSEBUG00000003639	-	52	88.608	Eptatretus_burgeri
ENSFALG00000009478	LSM4	99	78.986	ENSECAG00000010141	LSM4	56	81.159	Equus_caballus
ENSFALG00000009478	LSM4	95	94.030	ENSELUG00000012821	lsm4	100	94.030	Esox_lucius
ENSFALG00000009478	LSM4	99	89.855	ENSFCAG00000040580	LSM4	99	81.159	Felis_catus
ENSFALG00000009478	LSM4	99	88.406	ENSFDAG00000010124	LSM4	100	80.435	Fukomys_damarensis
ENSFALG00000009478	LSM4	70	98.969	ENSGMOG00000007729	lsm4	60	100.000	Gadus_morhua
ENSFALG00000009478	LSM4	99	100.000	ENSGALG00000003385	LSM4	99	100.000	Gallus_gallus
ENSFALG00000009478	LSM4	96	86.667	ENSGAFG00000004903	lsm4	55	95.890	Gambusia_affinis
ENSFALG00000009478	LSM4	68	98.936	ENSGACG00000008140	lsm4	58	100.000	Gasterosteus_aculeatus
ENSFALG00000009478	LSM4	99	99.270	ENSGAGG00000017812	LSM4	99	99.270	Gopherus_agassizii
ENSFALG00000009478	LSM4	99	89.855	ENSGGOG00000012914	-	99	81.159	Gorilla_gorilla
ENSFALG00000009478	LSM4	96	84.058	ENSHBUG00000008858	lsm4	61	95.370	Haplochromis_burtoni
ENSFALG00000009478	LSM4	99	84.783	ENSHGLG00000006568	LSM4	99	78.986	Heterocephalus_glaber_female
ENSFALG00000009478	LSM4	67	96.774	ENSHGLG00100007894	LSM4	100	96.774	Heterocephalus_glaber_male
ENSFALG00000009478	LSM4	96	88.060	ENSHCOG00000008819	lsm4	61	100.000	Hippocampus_comes
ENSFALG00000009478	LSM4	96	90.977	ENSIPUG00000005368	Lsm4	94	90.977	Ictalurus_punctatus
ENSFALG00000009478	LSM4	99	89.855	ENSSTOG00000016494	LSM4	99	81.159	Ictidomys_tridecemlineatus
ENSFALG00000009478	LSM4	99	87.681	ENSJJAG00000017420	Lsm4	99	79.710	Jaculus_jaculus
ENSFALG00000009478	LSM4	62	98.824	ENSKMAG00000005073	lsm4	60	98.851	Kryptolebias_marmoratus
ENSFALG00000009478	LSM4	71	97.959	ENSLBEG00000027930	lsm4	58	100.000	Labrus_bergylta
ENSFALG00000009478	LSM4	96	97.015	ENSLACG00000015861	LSM4	96	97.015	Latimeria_chalumnae
ENSFALG00000009478	LSM4	96	95.489	ENSLOCG00000002025	lsm4	94	95.489	Lepisosteus_oculatus
ENSFALG00000009478	LSM4	100	79.137	ENSLAFG00000017459	LSM4	100	81.295	Loxodonta_africana
ENSFALG00000009478	LSM4	99	89.855	ENSMFAG00000031194	LSM4	99	81.159	Macaca_fascicularis
ENSFALG00000009478	LSM4	99	89.855	ENSMMUG00000004405	LSM4	99	81.159	Macaca_mulatta
ENSFALG00000009478	LSM4	99	89.855	ENSMNEG00000042899	LSM4	99	81.159	Macaca_nemestrina
ENSFALG00000009478	LSM4	99	89.855	ENSMLEG00000027948	LSM4	99	81.159	Mandrillus_leucophaeus
ENSFALG00000009478	LSM4	96	88.806	ENSMAMG00000006190	lsm4	94	79.699	Mastacembelus_armatus
ENSFALG00000009478	LSM4	96	84.058	ENSMZEG00005016420	lsm4	60	100.000	Maylandia_zebra
ENSFALG00000009478	LSM4	100	99.281	ENSMGAG00000004976	LSM4	100	99.281	Meleagris_gallopavo
ENSFALG00000009478	LSM4	99	89.130	ENSMICG00000000222	LSM4	99	80.435	Microcebus_murinus
ENSFALG00000009478	LSM4	99	75.182	ENSMOCG00000020861	Lsm4	99	75.182	Microtus_ochrogaster
ENSFALG00000009478	LSM4	89	95.968	ENSMODG00000015044	-	100	95.968	Monodelphis_domestica
ENSFALG00000009478	LSM4	96	82.222	ENSMALG00000018159	lsm4	61	98.851	Monopterus_albus
ENSFALG00000009478	LSM4	99	75.182	MGP_CAROLIEiJ_G0031158	Lsm4	99	75.182	Mus_caroli
ENSFALG00000009478	LSM4	99	75.182	ENSMUSG00000031848	Lsm4	99	75.182	Mus_musculus
ENSFALG00000009478	LSM4	99	75.182	MGP_PahariEiJ_G0021623	Lsm4	99	75.182	Mus_pahari
ENSFALG00000009478	LSM4	99	75.182	MGP_SPRETEiJ_G0032276	Lsm4	99	75.182	Mus_spretus
ENSFALG00000009478	LSM4	99	89.855	ENSMPUG00000015589	LSM4	99	81.159	Mustela_putorius_furo
ENSFALG00000009478	LSM4	100	89.928	ENSMLUG00000004010	LSM4	100	81.295	Myotis_lucifugus
ENSFALG00000009478	LSM4	99	87.681	ENSNGAG00000008644	Lsm4	100	78.195	Nannospalax_galili
ENSFALG00000009478	LSM4	72	97.980	ENSNBRG00000022150	lsm4	54	100.000	Neolamprologus_brichardi
ENSFALG00000009478	LSM4	89	75.806	ENSMEUG00000013229	LSM4	100	77.419	Notamacropus_eugenii
ENSFALG00000009478	LSM4	89	82.258	ENSOPRG00000005575	LSM4	100	73.984	Ochotona_princeps
ENSFALG00000009478	LSM4	99	64.493	ENSODEG00000011712	-	99	55.797	Octodon_degus
ENSFALG00000009478	LSM4	99	88.406	ENSODEG00000020549	-	99	79.710	Octodon_degus
ENSFALG00000009478	LSM4	99	81.752	ENSODEG00000004519	-	99	71.014	Octodon_degus
ENSFALG00000009478	LSM4	96	83.453	ENSONIG00000012724	lsm4	59	100.000	Oreochromis_niloticus
ENSFALG00000009478	LSM4	81	94.828	ENSOANG00000007434	LSM4	100	94.828	Ornithorhynchus_anatinus
ENSFALG00000009478	LSM4	99	86.131	ENSORLG00000008391	lsm4	94	83.212	Oryzias_latipes
ENSFALG00000009478	LSM4	99	86.131	ENSORLG00020014829	lsm4	94	83.212	Oryzias_latipes_hni
ENSFALG00000009478	LSM4	99	86.131	ENSORLG00015010205	lsm4	94	83.212	Oryzias_latipes_hsok
ENSFALG00000009478	LSM4	99	85.401	ENSOMEG00000003606	lsm4	94	82.482	Oryzias_melastigma
ENSFALG00000009478	LSM4	72	97.000	ENSOGAG00000027992	LSM4	90	80.153	Otolemur_garnettii
ENSFALG00000009478	LSM4	63	98.851	ENSOARG00000012553	LSM4	94	79.832	Ovis_aries
ENSFALG00000009478	LSM4	99	89.855	ENSPPAG00000044045	-	99	81.159	Pan_paniscus
ENSFALG00000009478	LSM4	99	89.855	ENSPPRG00000018264	LSM4	99	81.159	Panthera_pardus
ENSFALG00000009478	LSM4	99	89.855	ENSPTIG00000006306	LSM4	100	81.159	Panthera_tigris_altaica
ENSFALG00000009478	LSM4	99	89.855	ENSPTRG00000031470	LSM4	99	81.159	Pan_troglodytes
ENSFALG00000009478	LSM4	99	89.855	ENSPANG00000014399	LSM4	99	81.159	Papio_anubis
ENSFALG00000009478	LSM4	96	92.424	ENSPKIG00000006154	lsm4	94	92.424	Paramormyrops_kingsleyae
ENSFALG00000009478	LSM4	99	98.540	ENSPSIG00000012358	LSM4	100	98.540	Pelodiscus_sinensis
ENSFALG00000009478	LSM4	100	74.638	ENSPEMG00000001358	Lsm4	99	75.182	Peromyscus_maniculatus_bairdii
ENSFALG00000009478	LSM4	96	88.148	ENSPLAG00000016267	lsm4	61	100.000	Poecilia_latipinna
ENSFALG00000009478	LSM4	96	87.407	ENSPMEG00000016378	lsm4	63	100.000	Poecilia_mexicana
ENSFALG00000009478	LSM4	99	89.855	ENSPPYG00000009736	LSM4	99	81.159	Pongo_abelii
ENSFALG00000009478	LSM4	89	76.613	ENSPCAG00000008513	LSM4	100	79.032	Procavia_capensis
ENSFALG00000009478	LSM4	99	89.130	ENSPCOG00000019837	LSM4	99	80.435	Propithecus_coquereli
ENSFALG00000009478	LSM4	99	89.855	ENSPVAG00000015383	LSM4	99	81.159	Pteropus_vampyrus
ENSFALG00000009478	LSM4	96	84.058	ENSPNYG00000016794	lsm4	60	100.000	Pundamilia_nyererei
ENSFALG00000009478	LSM4	96	88.722	ENSPNAG00000016598	lsm4	99	85.714	Pygocentrus_nattereri
ENSFALG00000009478	LSM4	99	75.182	ENSRNOG00000019572	Lsm4	99	75.182	Rattus_norvegicus
ENSFALG00000009478	LSM4	99	89.855	ENSRBIG00000024717	LSM4	99	81.159	Rhinopithecus_bieti
ENSFALG00000009478	LSM4	99	89.855	ENSRROG00000045706	LSM4	99	81.159	Rhinopithecus_roxellana
ENSFALG00000009478	LSM4	59	40.217	YER112W	LSM4	51	40.000	Saccharomyces_cerevisiae
ENSFALG00000009478	LSM4	90	88.800	ENSSBOG00000022455	LSM4	100	79.200	Saimiri_boliviensis_boliviensis
ENSFALG00000009478	LSM4	99	96.377	ENSSHAG00000011559	LSM4	99	96.377	Sarcophilus_harrisii
ENSFALG00000009478	LSM4	96	90.152	ENSSFOG00015021067	lsm4	94	90.152	Scleropages_formosus
ENSFALG00000009478	LSM4	71	96.939	ENSSMAG00000021020	lsm4	86	80.620	Scophthalmus_maximus
ENSFALG00000009478	LSM4	71	97.959	ENSSDUG00000009588	lsm4	52	100.000	Seriola_dumerili
ENSFALG00000009478	LSM4	71	97.959	ENSSLDG00000006827	lsm4	52	100.000	Seriola_lalandi_dorsalis
ENSFALG00000009478	LSM4	93	84.962	ENSSPUG00000010166	LSM4	57	100.000	Sphenodon_punctatus
ENSFALG00000009478	LSM4	71	97.959	ENSSPAG00000011615	lsm4	58	100.000	Stegastes_partitus
ENSFALG00000009478	LSM4	99	89.855	ENSSSCG00000034314	LSM4	99	81.159	Sus_scrofa
ENSFALG00000009478	LSM4	96	86.667	ENSTRUG00000021737	lsm4	61	97.701	Takifugu_rubripes
ENSFALG00000009478	LSM4	96	83.704	ENSTNIG00000010191	lsm4	94	83.704	Tetraodon_nigroviridis
ENSFALG00000009478	LSM4	100	89.928	ENSUAMG00000000665	LSM4	90	97.248	Ursus_americanus
ENSFALG00000009478	LSM4	99	89.855	ENSUMAG00000009013	LSM4	99	81.159	Ursus_maritimus
ENSFALG00000009478	LSM4	100	89.209	ENSVVUG00000008136	LSM4	71	80.576	Vulpes_vulpes
ENSFALG00000009478	LSM4	99	94.891	ENSXETG00000024933	lsm4	99	94.891	Xenopus_tropicalis