EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFALG00000010023 (Gene tree)
Gene ID: -
Gene Symbol: LSM8
Alias: YJR022W
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Minus strand
Length: 5357 bases
Position: chrJH603192.1:7889260-7894616
Accession: 101821106
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000010452	LSM	PF01423.22	1.3e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000010494	LSM8-201	1542	-	ENSFALP00000010452	96 (aa)	XP_005039353	U3K5Z8

Gene Model

Click here to download ENSFALG00000010023's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000010023's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFALG00000010023	LSM8	73	36.842	ENSFALG00000011912	LSM7	73	36.842
ENSFALG00000010023	LSM8	78	36.000	ENSFALG00000006723	LSM1	63	36.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000010023	LSM8	100	98.958	ENSG00000128534	LSM8	100	100.000	Homo_sapiens
ENSFALG00000010023	LSM8	100	93.750	ENSAPOG00000008649	lsm8	100	93.750	Acanthochromis_polyacanthus
ENSFALG00000010023	LSM8	100	98.958	ENSAMEG00000001162	LSM8	100	98.958	Ailuropoda_melanoleuca
ENSFALG00000010023	LSM8	78	98.667	ENSACIG00000014694	lsm8	100	98.667	Amphilophus_citrinellus
ENSFALG00000010023	LSM8	100	93.750	ENSAOCG00000013926	lsm8	100	93.750	Amphiprion_ocellaris
ENSFALG00000010023	LSM8	100	93.750	ENSAPEG00000023502	lsm8	100	93.750	Amphiprion_percula
ENSFALG00000010023	LSM8	78	98.667	ENSATEG00000023432	lsm8	100	98.667	Anabas_testudineus
ENSFALG00000010023	LSM8	94	95.556	ENSAPLG00000005115	LSM8	91	95.556	Anas_platyrhynchos
ENSFALG00000010023	LSM8	100	98.958	ENSANAG00000027771	LSM8	100	98.958	Aotus_nancymaae
ENSFALG00000010023	LSM8	100	93.750	ENSACLG00000011253	lsm8	100	93.750	Astatotilapia_calliptera
ENSFALG00000010023	LSM8	100	95.833	ENSAMXG00000042902	lsm8	100	95.833	Astyanax_mexicanus
ENSFALG00000010023	LSM8	100	98.958	ENSBTAG00000012649	LSM8	100	98.958	Bos_taurus
ENSFALG00000010023	LSM8	98	58.511	WBGene00003082	lsm-8	96	58.511	Caenorhabditis_elegans
ENSFALG00000010023	LSM8	100	98.958	ENSCJAG00000046406	LSM8	100	98.958	Callithrix_jacchus
ENSFALG00000010023	LSM8	98	100.000	ENSCAFG00000016459	LSM8	95	100.000	Canis_familiaris
ENSFALG00000010023	LSM8	89	98.824	ENSCAFG00020012800	-	66	98.824	Canis_lupus_dingo
ENSFALG00000010023	LSM8	100	98.958	ENSCAFG00020007643	-	100	98.958	Canis_lupus_dingo
ENSFALG00000010023	LSM8	89	98.824	ENSCHIG00000014201	LSM8	90	98.824	Capra_hircus
ENSFALG00000010023	LSM8	100	98.958	ENSTSYG00000032434	LSM8	100	98.958	Carlito_syrichta
ENSFALG00000010023	LSM8	77	97.297	ENSCAPG00000008253	LSM8	100	97.297	Cavia_aperea
ENSFALG00000010023	LSM8	100	98.958	ENSCPOG00000035673	LSM8	100	98.958	Cavia_porcellus
ENSFALG00000010023	LSM8	100	98.958	ENSCCAG00000021329	LSM8	100	98.958	Cebus_capucinus
ENSFALG00000010023	LSM8	100	98.958	ENSCATG00000045302	LSM8	100	98.958	Cercocebus_atys
ENSFALG00000010023	LSM8	100	98.958	ENSCLAG00000003726	LSM8	100	98.958	Chinchilla_lanigera
ENSFALG00000010023	LSM8	100	94.792	ENSCSAG00000019007	-	100	94.792	Chlorocebus_sabaeus
ENSFALG00000010023	LSM8	100	98.958	ENSCSAG00000010802	-	100	98.958	Chlorocebus_sabaeus
ENSFALG00000010023	LSM8	89	98.824	ENSCPBG00000008154	LSM8	87	98.824	Chrysemys_picta_bellii
ENSFALG00000010023	LSM8	100	75.000	ENSCING00000024877	-	100	75.000	Ciona_intestinalis
ENSFALG00000010023	LSM8	100	98.958	ENSCANG00000040728	LSM8	100	98.958	Colobus_angolensis_palliatus
ENSFALG00000010023	LSM8	100	98.958	ENSCGRG00001000450	Lsm8	100	98.958	Cricetulus_griseus_chok1gshd
ENSFALG00000010023	LSM8	89	98.824	ENSCGRG00000005587	Lsm8	100	98.824	Cricetulus_griseus_crigri
ENSFALG00000010023	LSM8	100	82.292	ENSCSEG00000004164	lsm8	100	82.292	Cynoglossus_semilaevis
ENSFALG00000010023	LSM8	100	92.708	ENSCVAG00000020547	lsm8	100	92.708	Cyprinodon_variegatus
ENSFALG00000010023	LSM8	100	92.708	ENSDARG00000091656	lsm8	100	92.708	Danio_rerio
ENSFALG00000010023	LSM8	100	98.958	ENSDNOG00000034613	LSM8	100	98.958	Dasypus_novemcinctus
ENSFALG00000010023	LSM8	100	98.958	ENSDORG00000027868	Lsm8	100	98.958	Dipodomys_ordii
ENSFALG00000010023	LSM8	98	70.213	FBgn0035271	CG2021	99	70.213	Drosophila_melanogaster
ENSFALG00000010023	LSM8	100	100.000	ENSETEG00000011594	LSM8	100	100.000	Echinops_telfairi
ENSFALG00000010023	LSM8	77	93.243	ENSEBUG00000012017	lsm8	100	93.243	Eptatretus_burgeri
ENSFALG00000010023	LSM8	100	98.958	ENSEASG00005008932	LSM8	62	98.958	Equus_asinus_asinus
ENSFALG00000010023	LSM8	89	98.824	ENSECAG00000024025	LSM8	77	98.824	Equus_caballus
ENSFALG00000010023	LSM8	100	92.708	ENSELUG00000010138	lsm8	100	92.708	Esox_lucius
ENSFALG00000010023	LSM8	100	98.958	ENSFCAG00000036620	-	100	98.958	Felis_catus
ENSFALG00000010023	LSM8	85	74.390	ENSFCAG00000044794	-	83	74.390	Felis_catus
ENSFALG00000010023	LSM8	100	98.958	ENSFDAG00000019530	LSM8	100	98.958	Fukomys_damarensis
ENSFALG00000010023	LSM8	100	93.750	ENSFHEG00000013729	lsm8	100	93.750	Fundulus_heteroclitus
ENSFALG00000010023	LSM8	100	100.000	ENSGALG00000009110	LSM8	100	100.000	Gallus_gallus
ENSFALG00000010023	LSM8	100	92.708	ENSGAFG00000001135	lsm8	100	92.708	Gambusia_affinis
ENSFALG00000010023	LSM8	100	98.958	ENSGAGG00000017366	LSM8	100	98.958	Gopherus_agassizii
ENSFALG00000010023	LSM8	100	98.958	ENSGGOG00000041883	LSM8	100	98.958	Gorilla_gorilla
ENSFALG00000010023	LSM8	100	93.750	ENSHBUG00000003646	lsm8	100	93.750	Haplochromis_burtoni
ENSFALG00000010023	LSM8	71	100.000	ENSHGLG00000001988	-	99	100.000	Heterocephalus_glaber_female
ENSFALG00000010023	LSM8	100	92.708	ENSHGLG00000019782	-	100	92.708	Heterocephalus_glaber_female
ENSFALG00000010023	LSM8	98	97.872	ENSHGLG00100003934	-	94	97.872	Heterocephalus_glaber_male
ENSFALG00000010023	LSM8	100	94.792	ENSHGLG00100012166	-	100	94.792	Heterocephalus_glaber_male
ENSFALG00000010023	LSM8	100	92.708	ENSHCOG00000005037	lsm8	100	92.708	Hippocampus_comes
ENSFALG00000010023	LSM8	100	95.833	ENSIPUG00000019811	NAA38	100	95.833	Ictalurus_punctatus
ENSFALG00000010023	LSM8	92	86.364	ENSSTOG00000034801	-	81	86.364	Ictidomys_tridecemlineatus
ENSFALG00000010023	LSM8	100	98.958	ENSSTOG00000009039	LSM8	100	98.958	Ictidomys_tridecemlineatus
ENSFALG00000010023	LSM8	100	98.958	ENSJJAG00000009031	Lsm8	99	98.958	Jaculus_jaculus
ENSFALG00000010023	LSM8	100	93.750	ENSKMAG00000018983	lsm8	100	93.750	Kryptolebias_marmoratus
ENSFALG00000010023	LSM8	100	95.833	ENSLACG00000010231	LSM8	100	95.833	Latimeria_chalumnae
ENSFALG00000010023	LSM8	100	94.792	ENSLOCG00000015580	lsm8	100	94.792	Lepisosteus_oculatus
ENSFALG00000010023	LSM8	100	97.938	ENSLAFG00000011242	LSM8	100	97.938	Loxodonta_africana
ENSFALG00000010023	LSM8	100	98.958	ENSMFAG00000035798	LSM8	100	98.958	Macaca_fascicularis
ENSFALG00000010023	LSM8	100	94.792	ENSMFAG00000013044	-	100	94.792	Macaca_fascicularis
ENSFALG00000010023	LSM8	100	98.958	ENSMMUG00000046401	LSM8	100	95.946	Macaca_mulatta
ENSFALG00000010023	LSM8	100	98.958	ENSMNEG00000036764	-	100	98.958	Macaca_nemestrina
ENSFALG00000010023	LSM8	78	94.667	ENSMNEG00000011141	-	100	94.667	Macaca_nemestrina
ENSFALG00000010023	LSM8	100	98.958	ENSMLEG00000035828	-	100	98.958	Mandrillus_leucophaeus
ENSFALG00000010023	LSM8	100	83.333	ENSMLEG00000039324	-	100	83.333	Mandrillus_leucophaeus
ENSFALG00000010023	LSM8	78	98.667	ENSMAMG00000018839	lsm8	100	98.667	Mastacembelus_armatus
ENSFALG00000010023	LSM8	100	93.750	ENSMZEG00005019138	lsm8	100	93.750	Maylandia_zebra
ENSFALG00000010023	LSM8	100	100.000	ENSMGAG00000008808	LSM8	100	100.000	Meleagris_gallopavo
ENSFALG00000010023	LSM8	100	92.708	ENSMAUG00000015721	-	100	92.708	Mesocricetus_auratus
ENSFALG00000010023	LSM8	100	79.167	ENSMAUG00000015356	-	100	79.167	Mesocricetus_auratus
ENSFALG00000010023	LSM8	75	91.667	ENSMAUG00000020287	-	100	89.189	Mesocricetus_auratus
ENSFALG00000010023	LSM8	100	98.958	ENSMICG00000042730	LSM8	100	98.958	Microcebus_murinus
ENSFALG00000010023	LSM8	100	98.958	ENSMOCG00000001688	Lsm8	100	98.958	Microtus_ochrogaster
ENSFALG00000010023	LSM8	78	98.667	ENSMMOG00000006046	lsm8	100	98.667	Mola_mola
ENSFALG00000010023	LSM8	76	86.667	ENSMODG00000015729	LSM8	96	86.667	Monodelphis_domestica
ENSFALG00000010023	LSM8	100	94.792	ENSMALG00000000405	lsm8	100	94.792	Monopterus_albus
ENSFALG00000010023	LSM8	100	98.958	MGP_CAROLIEiJ_G0028125	-	100	98.958	Mus_caroli
ENSFALG00000010023	LSM8	100	98.958	ENSMUSG00000044155	Lsm8	100	98.958	Mus_musculus
ENSFALG00000010023	LSM8	100	98.958	MGP_PahariEiJ_G0021881	Lsm8	100	98.958	Mus_pahari
ENSFALG00000010023	LSM8	100	98.958	MGP_SPRETEiJ_G0029125	-	100	98.958	Mus_spretus
ENSFALG00000010023	LSM8	100	97.917	ENSMLUG00000027762	-	100	97.917	Myotis_lucifugus
ENSFALG00000010023	LSM8	100	98.958	ENSMLUG00000006837	-	100	98.958	Myotis_lucifugus
ENSFALG00000010023	LSM8	100	98.958	ENSNGAG00000016554	Lsm8	100	98.958	Nannospalax_galili
ENSFALG00000010023	LSM8	100	93.750	ENSNBRG00000014441	lsm8	100	93.750	Neolamprologus_brichardi
ENSFALG00000010023	LSM8	100	98.958	ENSNLEG00000011768	LSM8	100	98.958	Nomascus_leucogenys
ENSFALG00000010023	LSM8	100	87.500	ENSMEUG00000007801	LSM8	100	87.500	Notamacropus_eugenii
ENSFALG00000010023	LSM8	89	98.824	ENSOPRG00000014809	LSM8	100	98.824	Ochotona_princeps
ENSFALG00000010023	LSM8	90	82.558	ENSODEG00000020290	-	100	82.558	Octodon_degus
ENSFALG00000010023	LSM8	100	98.958	ENSODEG00000000418	-	100	98.958	Octodon_degus
ENSFALG00000010023	LSM8	100	97.917	ENSOANG00000014536	LSM8	100	97.917	Ornithorhynchus_anatinus
ENSFALG00000010023	LSM8	100	97.938	ENSOCUG00000017359	LSM8	100	97.938	Oryctolagus_cuniculus
ENSFALG00000010023	LSM8	100	83.333	ENSORLG00000017432	lsm8	100	83.333	Oryzias_latipes
ENSFALG00000010023	LSM8	100	83.333	ENSORLG00020004376	lsm8	100	83.333	Oryzias_latipes_hni
ENSFALG00000010023	LSM8	100	93.750	ENSORLG00015003757	lsm8	100	93.750	Oryzias_latipes_hsok
ENSFALG00000010023	LSM8	100	81.250	ENSOMEG00000022509	lsm8	100	82.292	Oryzias_melastigma
ENSFALG00000010023	LSM8	100	98.958	ENSOGAG00000013377	LSM8	100	98.958	Otolemur_garnettii
ENSFALG00000010023	LSM8	100	98.958	ENSOARG00000017974	LSM8	100	98.958	Ovis_aries
ENSFALG00000010023	LSM8	78	98.667	ENSPPAG00000043228	-	100	98.667	Pan_paniscus
ENSFALG00000010023	LSM8	100	98.958	ENSPPRG00000006444	LSM8	100	98.958	Panthera_pardus
ENSFALG00000010023	LSM8	100	98.958	ENSPTIG00000004722	LSM8	100	98.958	Panthera_tigris_altaica
ENSFALG00000010023	LSM8	78	98.667	ENSPTRG00000046596	-	100	98.667	Pan_troglodytes
ENSFALG00000010023	LSM8	100	92.708	ENSPANG00000019395	-	100	92.708	Papio_anubis
ENSFALG00000010023	LSM8	100	98.958	ENSPANG00000035470	-	100	98.958	Papio_anubis
ENSFALG00000010023	LSM8	89	98.824	ENSPKIG00000006092	lsm8	86	98.824	Paramormyrops_kingsleyae
ENSFALG00000010023	LSM8	78	98.667	ENSPSIG00000017054	LSM8	100	98.667	Pelodiscus_sinensis
ENSFALG00000010023	LSM8	78	98.667	ENSPMGG00000016442	lsm8	100	98.667	Periophthalmus_magnuspinnatus
ENSFALG00000010023	LSM8	77	95.946	ENSPEMG00000009153	Lsm8	100	95.946	Peromyscus_maniculatus_bairdii
ENSFALG00000010023	LSM8	97	100.000	ENSPCIG00000021467	LSM8	98	100.000	Phascolarctos_cinereus
ENSFALG00000010023	LSM8	100	92.708	ENSPFOG00000012340	lsm8	100	92.708	Poecilia_formosa
ENSFALG00000010023	LSM8	100	86.458	ENSPLAG00000000516	lsm8	100	86.458	Poecilia_latipinna
ENSFALG00000010023	LSM8	100	92.708	ENSPMEG00000022567	lsm8	100	92.708	Poecilia_mexicana
ENSFALG00000010023	LSM8	76	86.250	ENSPREG00000005527	lsm8	72	86.250	Poecilia_reticulata
ENSFALG00000010023	LSM8	100	98.958	ENSPPYG00000017942	LSM8	100	98.958	Pongo_abelii
ENSFALG00000010023	LSM8	100	98.958	ENSPCOG00000003309	-	100	98.958	Propithecus_coquereli
ENSFALG00000010023	LSM8	97	78.495	ENSPCOG00000017982	-	97	78.495	Propithecus_coquereli
ENSFALG00000010023	LSM8	89	97.647	ENSPVAG00000000990	LSM8	100	97.647	Pteropus_vampyrus
ENSFALG00000010023	LSM8	100	93.750	ENSPNYG00000011448	lsm8	100	93.750	Pundamilia_nyererei
ENSFALG00000010023	LSM8	100	95.833	ENSPNAG00000010252	lsm8	100	95.833	Pygocentrus_nattereri
ENSFALG00000010023	LSM8	100	98.958	ENSRNOG00000058677	Lsm8	100	98.958	Rattus_norvegicus
ENSFALG00000010023	LSM8	100	98.958	ENSRBIG00000032851	LSM8	100	98.958	Rhinopithecus_bieti
ENSFALG00000010023	LSM8	100	98.958	ENSRROG00000039618	LSM8	100	98.958	Rhinopithecus_roxellana
ENSFALG00000010023	LSM8	100	98.958	ENSSBOG00000023223	LSM8	100	98.958	Saimiri_boliviensis_boliviensis
ENSFALG00000010023	LSM8	100	98.958	ENSSHAG00000018435	-	100	98.958	Sarcophilus_harrisii
ENSFALG00000010023	LSM8	100	92.708	ENSSFOG00015004412	lsm8	100	92.708	Scleropages_formosus
ENSFALG00000010023	LSM8	78	96.000	ENSSMAG00000009458	lsm8	100	96.000	Scophthalmus_maximus
ENSFALG00000010023	LSM8	100	93.750	ENSSDUG00000014702	lsm8	100	93.750	Seriola_dumerili
ENSFALG00000010023	LSM8	78	98.667	ENSSLDG00000016870	lsm8	100	98.667	Seriola_lalandi_dorsalis
ENSFALG00000010023	LSM8	75	98.611	ENSSARG00000009628	-	100	98.611	Sorex_araneus
ENSFALG00000010023	LSM8	100	98.958	ENSSPUG00000017419	LSM8	100	98.958	Sphenodon_punctatus
ENSFALG00000010023	LSM8	100	93.750	ENSSPAG00000021422	lsm8	100	93.750	Stegastes_partitus
ENSFALG00000010023	LSM8	100	98.958	ENSSSCG00000021652	LSM8	100	98.958	Sus_scrofa
ENSFALG00000010023	LSM8	100	97.917	ENSTGUG00000016823	-	100	97.917	Taeniopygia_guttata
ENSFALG00000010023	LSM8	100	98.958	ENSTGUG00000004730	-	100	98.958	Taeniopygia_guttata
ENSFALG00000010023	LSM8	100	93.750	ENSTRUG00000025192	lsm8	100	93.750	Takifugu_rubripes
ENSFALG00000010023	LSM8	100	93.750	ENSTNIG00000002864	lsm8	100	93.750	Tetraodon_nigroviridis
ENSFALG00000010023	LSM8	100	98.958	ENSTTRG00000001023	LSM8	100	98.958	Tursiops_truncatus
ENSFALG00000010023	LSM8	92	95.455	ENSUAMG00000006943	-	92	95.455	Ursus_americanus
ENSFALG00000010023	LSM8	92	95.455	ENSUMAG00000003073	LSM8	94	95.455	Ursus_maritimus
ENSFALG00000010023	LSM8	100	98.958	ENSVPAG00000001530	LSM8	100	98.958	Vicugna_pacos
ENSFALG00000010023	LSM8	78	96.000	ENSVVUG00000013248	-	82	96.000	Vulpes_vulpes
ENSFALG00000010023	LSM8	93	97.753	ENSXETG00000021829	lsm8	92	97.753	Xenopus_tropicalis
ENSFALG00000010023	LSM8	100	90.625	ENSXCOG00000012938	lsm8	100	90.625	Xiphophorus_couchianus
ENSFALG00000010023	LSM8	100	92.708	ENSXMAG00000025919	lsm8	100	92.708	Xiphophorus_maculatus