EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFALG00000011981 (Gene tree)
Gene ID: -
Gene Symbol: DDB1
Alias: -
Full Name: damage specific DNA binding protein 1
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 12983 bases
Position: chrJH603356.1:912338-925320
Accession: 2717
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000012510	CPSF_A	PF03178.15	7.7e-83	1	1
ENSFALP00000012512	CPSF_A	PF03178.15	2.6e-82	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000012562	DDB1-202	3420	-	ENSFALP00000012512	1140 (aa)	-	U3KBV8
ENSFALT00000012560	DDB1-201	3429	-	ENSFALP00000012510	1143 (aa)	-	U3KBV6

Gene Model

Click here to download ENSFALG00000011981's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000011981's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000011981	DDB1	100	96.850	ENSG00000167986	DDB1	100	96.970	Homo_sapiens
ENSFALG00000011981	DDB1	98	90.421	ENSAPOG00000005036	ddb1	99	90.918	Acanthochromis_polyacanthus
ENSFALG00000011981	DDB1	100	96.938	ENSAMEG00000016518	DDB1	100	96.938	Ailuropoda_melanoleuca
ENSFALG00000011981	DDB1	86	91.020	ENSACIG00000020624	ddb1	99	91.020	Amphilophus_citrinellus
ENSFALG00000011981	DDB1	100	90.289	ENSAOCG00000003066	ddb1	100	90.289	Amphiprion_ocellaris
ENSFALG00000011981	DDB1	100	90.376	ENSAPEG00000000092	ddb1	100	90.376	Amphiprion_percula
ENSFALG00000011981	DDB1	94	91.070	ENSATEG00000020571	ddb1	97	91.070	Anabas_testudineus
ENSFALG00000011981	DDB1	98	99.110	ENSAPLG00000007174	DDB1	99	99.110	Anas_platyrhynchos
ENSFALG00000011981	DDB1	100	96.588	ENSACAG00000017758	DDB1	100	96.588	Anolis_carolinensis
ENSFALG00000011981	DDB1	100	96.850	ENSANAG00000021878	DDB1	100	96.850	Aotus_nancymaae
ENSFALG00000011981	DDB1	100	90.639	ENSACLG00000012401	ddb1	100	90.639	Astatotilapia_calliptera
ENSFALG00000011981	DDB1	100	96.938	ENSBTAG00000021569	DDB1	93	96.938	Bos_taurus
ENSFALG00000011981	DDB1	100	37.031	WBGene00010890	ddb-1	100	37.031	Caenorhabditis_elegans
ENSFALG00000011981	DDB1	100	96.850	ENSCJAG00000019319	DDB1	100	96.850	Callithrix_jacchus
ENSFALG00000011981	DDB1	100	96.938	ENSCAFG00000016264	DDB1	100	96.938	Canis_familiaris
ENSFALG00000011981	DDB1	94	97.214	ENSCAFG00020012722	DDB1	99	97.214	Canis_lupus_dingo
ENSFALG00000011981	DDB1	100	96.938	ENSCHIG00000014969	DDB1	100	96.938	Capra_hircus
ENSFALG00000011981	DDB1	100	96.413	ENSTSYG00000008027	DDB1	100	96.413	Carlito_syrichta
ENSFALG00000011981	DDB1	98	96.613	ENSCAPG00000010786	DDB1	100	96.613	Cavia_aperea
ENSFALG00000011981	DDB1	100	96.325	ENSCPOG00000009956	DDB1	100	96.325	Cavia_porcellus
ENSFALG00000011981	DDB1	100	96.850	ENSCCAG00000035883	DDB1	100	96.850	Cebus_capucinus
ENSFALG00000011981	DDB1	100	94.459	ENSCATG00000044495	DDB1	100	94.459	Cercocebus_atys
ENSFALG00000011981	DDB1	100	96.413	ENSCLAG00000004126	DDB1	100	96.413	Chinchilla_lanigera
ENSFALG00000011981	DDB1	100	96.850	ENSCSAG00000006392	DDB1	100	96.850	Chlorocebus_sabaeus
ENSFALG00000011981	DDB1	88	90.395	ENSCHOG00000011377	DDB1	90	90.395	Choloepus_hoffmanni
ENSFALG00000011981	DDB1	100	97.638	ENSCPBG00000017728	DDB1	100	97.638	Chrysemys_picta_bellii
ENSFALG00000011981	DDB1	100	61.472	ENSCING00000007437	-	100	61.472	Ciona_intestinalis
ENSFALG00000011981	DDB1	94	60.331	ENSCSAVG00000004783	-	100	60.331	Ciona_savignyi
ENSFALG00000011981	DDB1	100	96.850	ENSCANG00000019948	DDB1	100	96.850	Colobus_angolensis_palliatus
ENSFALG00000011981	DDB1	100	96.938	ENSCGRG00001016599	Ddb1	100	96.938	Cricetulus_griseus_chok1gshd
ENSFALG00000011981	DDB1	100	96.938	ENSCGRG00000013427	Ddb1	100	96.938	Cricetulus_griseus_crigri
ENSFALG00000011981	DDB1	93	90.386	ENSCSEG00000012499	ddb1	99	88.866	Cynoglossus_semilaevis
ENSFALG00000011981	DDB1	94	90.968	ENSCVAG00000019531	ddb1	99	90.968	Cyprinodon_variegatus
ENSFALG00000011981	DDB1	100	87.850	ENSDARG00000074431	ddb1	100	87.969	Danio_rerio
ENSFALG00000011981	DDB1	95	96.584	ENSDNOG00000014884	DDB1	98	96.584	Dasypus_novemcinctus
ENSFALG00000011981	DDB1	84	96.201	ENSDORG00000000127	Ddb1	100	96.201	Dipodomys_ordii
ENSFALG00000011981	DDB1	100	60.643	FBgn0260962	pic	100	60.643	Drosophila_melanogaster
ENSFALG00000011981	DDB1	71	96.457	ENSETEG00000001053	-	71	96.457	Echinops_telfairi
ENSFALG00000011981	DDB1	78	84.252	ENSEBUG00000014593	ddb1	97	84.252	Eptatretus_burgeri
ENSFALG00000011981	DDB1	100	96.763	ENSEASG00005008184	DDB1	100	96.763	Equus_asinus_asinus
ENSFALG00000011981	DDB1	100	96.850	ENSECAG00000012136	DDB1	100	96.850	Equus_caballus
ENSFALG00000011981	DDB1	85	94.949	ENSEEUG00000003194	DDB1	85	94.949	Erinaceus_europaeus
ENSFALG00000011981	DDB1	100	90.201	ENSELUG00000023868	ddb1	100	90.201	Esox_lucius
ENSFALG00000011981	DDB1	100	96.938	ENSFCAG00000029716	DDB1	100	96.938	Felis_catus
ENSFALG00000011981	DDB1	100	96.500	ENSFDAG00000005128	DDB1	100	96.500	Fukomys_damarensis
ENSFALG00000011981	DDB1	90	90.698	ENSFHEG00000022133	ddb1	99	90.698	Fundulus_heteroclitus
ENSFALG00000011981	DDB1	79	94.649	ENSGMOG00000019386	ddb1	94	94.649	Gadus_morhua
ENSFALG00000011981	DDB1	100	98.600	ENSGALG00000042333	DDB1	100	98.600	Gallus_gallus
ENSFALG00000011981	DDB1	94	90.353	ENSGAFG00000013142	ddb1	99	90.353	Gambusia_affinis
ENSFALG00000011981	DDB1	96	89.305	ENSGACG00000017182	ddb1	100	89.305	Gasterosteus_aculeatus
ENSFALG00000011981	DDB1	95	98.068	ENSGAGG00000014124	DDB1	100	98.068	Gopherus_agassizii
ENSFALG00000011981	DDB1	100	96.850	ENSGGOG00000004052	DDB1	100	96.850	Gorilla_gorilla
ENSFALG00000011981	DDB1	100	90.639	ENSHBUG00000008873	ddb1	100	90.639	Haplochromis_burtoni
ENSFALG00000011981	DDB1	100	96.500	ENSHGLG00000018430	DDB1	100	96.500	Heterocephalus_glaber_female
ENSFALG00000011981	DDB1	100	95.451	ENSHGLG00100014475	DDB1	100	95.451	Heterocephalus_glaber_male
ENSFALG00000011981	DDB1	94	90.176	ENSHCOG00000018670	ddb1	99	90.176	Hippocampus_comes
ENSFALG00000011981	DDB1	100	89.851	ENSIPUG00000005612	DDB1	100	89.851	Ictalurus_punctatus
ENSFALG00000011981	DDB1	100	96.850	ENSSTOG00000007552	DDB1	100	96.850	Ictidomys_tridecemlineatus
ENSFALG00000011981	DDB1	100	96.850	ENSJJAG00000017769	Ddb1	100	96.850	Jaculus_jaculus
ENSFALG00000011981	DDB1	94	90.689	ENSKMAG00000002315	ddb1	99	90.689	Kryptolebias_marmoratus
ENSFALG00000011981	DDB1	85	90.975	ENSLBEG00000017065	ddb1	99	91.241	Labrus_bergylta
ENSFALG00000011981	DDB1	100	93.788	ENSLACG00000017611	DDB1	100	93.788	Latimeria_chalumnae
ENSFALG00000011981	DDB1	92	82.595	ENSLOCG00000000012	ddb1	100	82.595	Lepisosteus_oculatus
ENSFALG00000011981	DDB1	100	96.675	ENSLAFG00000011513	DDB1	100	96.675	Loxodonta_africana
ENSFALG00000011981	DDB1	100	96.850	ENSMFAG00000042035	DDB1	100	96.850	Macaca_fascicularis
ENSFALG00000011981	DDB1	99	96.914	ENSMMUG00000002691	DDB1	99	96.914	Macaca_mulatta
ENSFALG00000011981	DDB1	100	96.850	ENSMNEG00000031559	DDB1	100	96.850	Macaca_nemestrina
ENSFALG00000011981	DDB1	100	96.850	ENSMLEG00000044136	DDB1	100	96.850	Mandrillus_leucophaeus
ENSFALG00000011981	DDB1	100	90.726	ENSMAMG00000014372	ddb1	100	90.726	Mastacembelus_armatus
ENSFALG00000011981	DDB1	100	90.551	ENSMZEG00005013835	ddb1	100	90.551	Maylandia_zebra
ENSFALG00000011981	DDB1	94	98.976	ENSMGAG00000004990	DDB1	100	98.976	Meleagris_gallopavo
ENSFALG00000011981	DDB1	100	96.938	ENSMAUG00000012926	Ddb1	100	96.938	Mesocricetus_auratus
ENSFALG00000011981	DDB1	100	96.850	ENSMICG00000013703	DDB1	100	96.850	Microcebus_murinus
ENSFALG00000011981	DDB1	100	96.850	ENSMOCG00000020499	Ddb1	100	96.850	Microtus_ochrogaster
ENSFALG00000011981	DDB1	86	90.816	ENSMMOG00000001758	ddb1	99	90.816	Mola_mola
ENSFALG00000011981	DDB1	100	88.149	ENSMODG00000020353	DDB1	100	88.149	Monodelphis_domestica
ENSFALG00000011981	DDB1	100	90.639	ENSMALG00000014071	ddb1	100	90.639	Monopterus_albus
ENSFALG00000011981	DDB1	100	96.938	MGP_CAROLIEiJ_G0022695	Ddb1	100	96.938	Mus_caroli
ENSFALG00000011981	DDB1	100	96.850	ENSMUSG00000024740	Ddb1	100	96.850	Mus_musculus
ENSFALG00000011981	DDB1	100	96.938	MGP_PahariEiJ_G0014189	Ddb1	100	96.938	Mus_pahari
ENSFALG00000011981	DDB1	100	96.938	MGP_SPRETEiJ_G0023609	Ddb1	100	96.938	Mus_spretus
ENSFALG00000011981	DDB1	100	93.788	ENSMPUG00000014200	DDB1	100	93.788	Mustela_putorius_furo
ENSFALG00000011981	DDB1	100	96.850	ENSMLUG00000013232	DDB1	100	96.850	Myotis_lucifugus
ENSFALG00000011981	DDB1	100	96.850	ENSNGAG00000009384	Ddb1	100	96.850	Nannospalax_galili
ENSFALG00000011981	DDB1	100	90.726	ENSNBRG00000019581	ddb1	100	90.726	Neolamprologus_brichardi
ENSFALG00000011981	DDB1	100	93.853	ENSNLEG00000002022	DDB1	100	93.853	Nomascus_leucogenys
ENSFALG00000011981	DDB1	90	96.516	ENSMEUG00000001099	DDB1	93	96.516	Notamacropus_eugenii
ENSFALG00000011981	DDB1	90	89.168	ENSOPRG00000008254	DDB1	90	89.168	Ochotona_princeps
ENSFALG00000011981	DDB1	100	96.150	ENSODEG00000002419	DDB1	100	96.150	Octodon_degus
ENSFALG00000011981	DDB1	100	90.639	ENSONIG00000005804	ddb1	100	90.639	Oreochromis_niloticus
ENSFALG00000011981	DDB1	91	97.198	ENSOANG00000004897	DDB1	100	97.198	Ornithorhynchus_anatinus
ENSFALG00000011981	DDB1	100	97.025	ENSOCUG00000001667	DDB1	100	97.025	Oryctolagus_cuniculus
ENSFALG00000011981	DDB1	96	89.093	ENSORLG00000001399	ddb1	98	90.778	Oryzias_latipes
ENSFALG00000011981	DDB1	96	89.001	ENSORLG00020001277	ddb1	96	90.538	Oryzias_latipes_hni
ENSFALG00000011981	DDB1	95	90.064	ENSORLG00015002080	ddb1	99	90.140	Oryzias_latipes_hsok
ENSFALG00000011981	DDB1	94	91.341	ENSOMEG00000006181	ddb1	97	91.341	Oryzias_melastigma
ENSFALG00000011981	DDB1	100	96.850	ENSOGAG00000016103	DDB1	100	96.850	Otolemur_garnettii
ENSFALG00000011981	DDB1	99	97.069	ENSOARG00000011716	DDB1	98	97.069	Ovis_aries
ENSFALG00000011981	DDB1	100	96.850	ENSPPAG00000035343	DDB1	100	96.850	Pan_paniscus
ENSFALG00000011981	DDB1	100	96.938	ENSPPRG00000013300	DDB1	100	96.938	Panthera_pardus
ENSFALG00000011981	DDB1	98	97.237	ENSPTIG00000006909	DDB1	98	97.237	Panthera_tigris_altaica
ENSFALG00000011981	DDB1	100	96.850	ENSPTRG00000003737	DDB1	100	96.850	Pan_troglodytes
ENSFALG00000011981	DDB1	100	96.850	ENSPANG00000000242	DDB1	100	96.850	Papio_anubis
ENSFALG00000011981	DDB1	95	89.807	ENSPKIG00000019213	ddb1	95	89.807	Paramormyrops_kingsleyae
ENSFALG00000011981	DDB1	98	97.425	ENSPSIG00000013275	DDB1	99	97.425	Pelodiscus_sinensis
ENSFALG00000011981	DDB1	86	90.714	ENSPMGG00000021179	ddb1	99	90.714	Periophthalmus_magnuspinnatus
ENSFALG00000011981	DDB1	100	96.938	ENSPEMG00000012241	Ddb1	100	96.938	Peromyscus_maniculatus_bairdii
ENSFALG00000011981	DDB1	89	86.640	ENSPMAG00000008479	ddb1	99	86.627	Petromyzon_marinus
ENSFALG00000011981	DDB1	100	97.113	ENSPCIG00000002643	DDB1	100	97.113	Phascolarctos_cinereus
ENSFALG00000011981	DDB1	100	90.289	ENSPFOG00000002768	ddb1	100	90.289	Poecilia_formosa
ENSFALG00000011981	DDB1	100	90.026	ENSPLAG00000017227	ddb1	100	90.026	Poecilia_latipinna
ENSFALG00000011981	DDB1	100	90.026	ENSPMEG00000011398	ddb1	100	90.026	Poecilia_mexicana
ENSFALG00000011981	DDB1	94	90.698	ENSPREG00000004440	ddb1	98	90.698	Poecilia_reticulata
ENSFALG00000011981	DDB1	100	92.408	ENSPPYG00000003193	DDB1	100	92.408	Pongo_abelii
ENSFALG00000011981	DDB1	85	96.434	ENSPCAG00000011040	DDB1	85	96.434	Procavia_capensis
ENSFALG00000011981	DDB1	100	95.721	ENSPCOG00000015176	DDB1	100	95.721	Propithecus_coquereli
ENSFALG00000011981	DDB1	100	96.763	ENSPVAG00000003847	DDB1	100	96.763	Pteropus_vampyrus
ENSFALG00000011981	DDB1	94	90.968	ENSPNAG00000006635	ddb1	97	90.968	Pygocentrus_nattereri
ENSFALG00000011981	DDB1	100	96.850	ENSRNOG00000020715	Ddb1	100	96.850	Rattus_norvegicus
ENSFALG00000011981	DDB1	100	96.850	ENSRBIG00000033611	DDB1	100	96.850	Rhinopithecus_bieti
ENSFALG00000011981	DDB1	100	96.850	ENSRROG00000041407	DDB1	100	96.850	Rhinopithecus_roxellana
ENSFALG00000011981	DDB1	100	96.938	ENSSBOG00000019775	DDB1	100	96.938	Saimiri_boliviensis_boliviensis
ENSFALG00000011981	DDB1	94	95.620	ENSSHAG00000011600	DDB1	100	95.620	Sarcophilus_harrisii
ENSFALG00000011981	DDB1	95	90.037	ENSSFOG00015011151	ddb1	98	90.037	Scleropages_formosus
ENSFALG00000011981	DDB1	100	90.114	ENSSMAG00000009495	ddb1	100	90.114	Scophthalmus_maximus
ENSFALG00000011981	DDB1	100	90.551	ENSSDUG00000004642	ddb1	100	90.551	Seriola_dumerili
ENSFALG00000011981	DDB1	100	90.551	ENSSLDG00000015804	ddb1	100	90.551	Seriola_lalandi_dorsalis
ENSFALG00000011981	DDB1	70	100.000	ENSSARG00000003290	-	72	100.000	Sorex_araneus
ENSFALG00000011981	DDB1	100	97.550	ENSSPUG00000019338	DDB1	100	97.550	Sphenodon_punctatus
ENSFALG00000011981	DDB1	94	90.977	ENSSPAG00000009888	ddb1	99	90.977	Stegastes_partitus
ENSFALG00000011981	DDB1	100	96.150	ENSSSCG00000013094	DDB1	100	96.150	Sus_scrofa
ENSFALG00000011981	DDB1	100	99.474	ENSTGUG00000006414	DDB1	100	99.474	Taeniopygia_guttata
ENSFALG00000011981	DDB1	94	89.259	ENSTRUG00000016682	ddb1	99	89.259	Takifugu_rubripes
ENSFALG00000011981	DDB1	88	84.776	ENSTNIG00000009565	ddb1	99	84.776	Tetraodon_nigroviridis
ENSFALG00000011981	DDB1	92	92.068	ENSTTRG00000011055	DDB1	94	92.068	Tursiops_truncatus
ENSFALG00000011981	DDB1	94	97.214	ENSUAMG00000017793	DDB1	94	97.214	Ursus_americanus
ENSFALG00000011981	DDB1	94	97.214	ENSUMAG00000011788	DDB1	98	97.214	Ursus_maritimus
ENSFALG00000011981	DDB1	90	93.333	ENSVPAG00000007963	DDB1	92	93.333	Vicugna_pacos
ENSFALG00000011981	DDB1	100	96.938	ENSVVUG00000004987	DDB1	100	96.938	Vulpes_vulpes
ENSFALG00000011981	DDB1	100	92.241	ENSXETG00000008820	ddb1	100	92.241	Xenopus_tropicalis
ENSFALG00000011981	DDB1	86	90.510	ENSXCOG00000013956	ddb1	99	90.510	Xiphophorus_couchianus
ENSFALG00000011981	DDB1	94	90.353	ENSXMAG00000000022	ddb1	99	90.353	Xiphophorus_maculatus