EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFALG00000012563 (Gene tree)
Gene ID: -
Gene Symbol: CHD6
Alias: CHD5|FLJ22369|KIAA1335|RIGB|dJ620E11.1
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 55490 bases
Position: chrJH603328.1:833036-888525
Accession: 101816785
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000013109	ResIII	PF04851.15	1.5e-07	1	1
ENSFALP00000013109	BRK	PF07533.16	1.7e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000013163	CHD6-201	11124	XM_005056953	ENSFALP00000013109	2760 (aa)	XP_005057010	U3KDK5

Gene Model

Click here to download ENSFALG00000012563's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000012563's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFALG00000012563	CHD6	72	68.477	ENSFALG00000005570	CHD7	72	66.531
ENSFALG00000012563	CHD6	80	62.406	ENSFALG00000013276	CHD9	85	66.186

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000012563	CHD6	98	71.366	ENSG00000124177	CHD6	99	93.411	Homo_sapiens
ENSFALG00000012563	CHD6	73	76.311	ENSAPOG00000013736	chd6	67	74.710	Acanthochromis_polyacanthus
ENSFALG00000012563	CHD6	98	71.248	ENSAMEG00000009496	CHD6	99	70.850	Ailuropoda_melanoleuca
ENSFALG00000012563	CHD6	69	73.379	ENSATEG00000005608	chd6	59	83.673	Anabas_testudineus
ENSFALG00000012563	CHD6	98	86.806	ENSAPLG00000015592	CHD6	99	86.901	Anas_platyrhynchos
ENSFALG00000012563	CHD6	98	70.782	ENSACAG00000006842	CHD6	99	70.609	Anolis_carolinensis
ENSFALG00000012563	CHD6	98	71.114	ENSANAG00000037548	CHD6	99	88.991	Aotus_nancymaae
ENSFALG00000012563	CHD6	77	73.531	ENSAMXG00000009576	chd6	76	73.810	Astyanax_mexicanus
ENSFALG00000012563	CHD6	98	71.006	ENSBTAG00000005733	CHD6	99	70.790	Bos_taurus
ENSFALG00000012563	CHD6	94	77.807	ENSCJAG00000017920	CHD6	99	89.174	Callithrix_jacchus
ENSFALG00000012563	CHD6	98	71.418	ENSCAFG00000009236	CHD6	99	71.636	Canis_familiaris
ENSFALG00000012563	CHD6	98	71.236	ENSCAFG00020012906	CHD6	95	91.506	Canis_lupus_dingo
ENSFALG00000012563	CHD6	98	70.718	ENSCHIG00000017606	CHD6	99	70.465	Capra_hircus
ENSFALG00000012563	CHD6	83	71.998	ENSTSYG00000014635	CHD6	99	71.998	Carlito_syrichta
ENSFALG00000012563	CHD6	98	71.341	ENSCPOG00000015641	CHD6	99	71.440	Cavia_porcellus
ENSFALG00000012563	CHD6	98	71.197	ENSCCAG00000036828	CHD6	99	88.991	Cebus_capucinus
ENSFALG00000012563	CHD6	98	71.130	ENSCATG00000039248	CHD6	99	88.991	Cercocebus_atys
ENSFALG00000012563	CHD6	98	71.310	ENSCLAG00000013743	CHD6	99	71.341	Chinchilla_lanigera
ENSFALG00000012563	CHD6	98	71.423	ENSCSAG00000013997	CHD6	99	71.171	Chlorocebus_sabaeus
ENSFALG00000012563	CHD6	89	77.064	ENSCHOG00000012647	CHD6	94	77.326	Choloepus_hoffmanni
ENSFALG00000012563	CHD6	99	82.043	ENSCPBG00000019382	CHD6	100	82.532	Chrysemys_picta_bellii
ENSFALG00000012563	CHD6	95	77.555	ENSCANG00000043435	CHD6	99	88.991	Colobus_angolensis_palliatus
ENSFALG00000012563	CHD6	98	71.026	ENSCGRG00001002694	Chd6	99	70.701	Cricetulus_griseus_chok1gshd
ENSFALG00000012563	CHD6	82	73.542	ENSDARG00000017244	chd6	75	77.543	Danio_rerio
ENSFALG00000012563	CHD6	93	78.032	ENSDNOG00000004176	CHD6	93	77.713	Dasypus_novemcinctus
ENSFALG00000012563	CHD6	97	71.811	ENSEASG00005023433	CHD6	95	93.436	Equus_asinus_asinus
ENSFALG00000012563	CHD6	98	71.859	ENSECAG00000011761	CHD6	99	71.786	Equus_caballus
ENSFALG00000012563	CHD6	71	79.416	ENSELUG00000012309	chd6	91	79.416	Esox_lucius
ENSFALG00000012563	CHD6	98	71.984	ENSFCAG00000003572	CHD6	99	72.757	Felis_catus
ENSFALG00000012563	CHD6	98	71.481	ENSFDAG00000013791	CHD6	99	71.262	Fukomys_damarensis
ENSFALG00000012563	CHD6	71	70.136	ENSGMOG00000011715	chd6	82	71.018	Gadus_morhua
ENSFALG00000012563	CHD6	76	71.995	ENSGACG00000000037	chd6	83	72.182	Gasterosteus_aculeatus
ENSFALG00000012563	CHD6	98	71.439	ENSGGOG00000013123	CHD6	99	88.991	Gorilla_gorilla
ENSFALG00000012563	CHD6	73	75.944	ENSHBUG00000014701	chd6	59	85.714	Haplochromis_burtoni
ENSFALG00000012563	CHD6	98	71.191	ENSHGLG00000004548	CHD6	99	71.993	Heterocephalus_glaber_female
ENSFALG00000012563	CHD6	98	71.191	ENSHGLG00100006401	CHD6	99	71.118	Heterocephalus_glaber_male
ENSFALG00000012563	CHD6	75	78.401	ENSIPUG00000003692	chd6	73	78.520	Ictalurus_punctatus
ENSFALG00000012563	CHD6	99	70.790	ENSSTOG00000013382	CHD6	100	71.732	Ictidomys_tridecemlineatus
ENSFALG00000012563	CHD6	88	72.732	ENSLACG00000010881	CHD6	89	73.243	Latimeria_chalumnae
ENSFALG00000012563	CHD6	69	81.976	ENSLOCG00000007386	chd6	88	75.407	Lepisosteus_oculatus
ENSFALG00000012563	CHD6	98	71.693	ENSLAFG00000012144	CHD6	99	71.548	Loxodonta_africana
ENSFALG00000012563	CHD6	98	71.408	ENSMFAG00000032830	CHD6	99	88.991	Macaca_fascicularis
ENSFALG00000012563	CHD6	98	71.408	ENSMMUG00000020458	CHD6	99	88.991	Macaca_mulatta
ENSFALG00000012563	CHD6	98	71.361	ENSMNEG00000040847	CHD6	99	88.991	Macaca_nemestrina
ENSFALG00000012563	CHD6	98	71.377	ENSMLEG00000031965	CHD6	99	88.991	Mandrillus_leucophaeus
ENSFALG00000012563	CHD6	76	72.581	ENSMAMG00000013111	chd6	60	85.714	Mastacembelus_armatus
ENSFALG00000012563	CHD6	98	86.647	ENSMGAG00000001121	CHD6	100	86.611	Meleagris_gallopavo
ENSFALG00000012563	CHD6	93	77.879	ENSMICG00000016641	CHD6	99	88.807	Microcebus_murinus
ENSFALG00000012563	CHD6	88	74.195	ENSMODG00000000720	-	99	74.154	Monodelphis_domestica
ENSFALG00000012563	CHD6	94	77.299	MGP_CAROLIEiJ_G0024604	Chd6	100	84.506	Mus_caroli
ENSFALG00000012563	CHD6	99	70.072	ENSMUSG00000057133	Chd6	100	84.338	Mus_musculus
ENSFALG00000012563	CHD6	99	70.014	MGP_PahariEiJ_G0026048	Chd6	100	84.673	Mus_pahari
ENSFALG00000012563	CHD6	99	70.155	MGP_SPRETEiJ_G0025526	Chd6	100	84.422	Mus_spretus
ENSFALG00000012563	CHD6	98	70.715	ENSMPUG00000017695	CHD6	99	70.815	Mustela_putorius_furo
ENSFALG00000012563	CHD6	77	73.916	ENSNBRG00000013839	chd6	75	77.590	Neolamprologus_brichardi
ENSFALG00000012563	CHD6	98	69.311	ENSNLEG00000006496	CHD6	99	69.264	Nomascus_leucogenys
ENSFALG00000012563	CHD6	93	75.369	ENSOPRG00000013376	-	99	69.045	Ochotona_princeps
ENSFALG00000012563	CHD6	79	75.709	ENSONIG00000000393	chd6	82	75.730	Oreochromis_niloticus
ENSFALG00000012563	CHD6	94	73.106	ENSOANG00000014347	CHD6	90	73.145	Ornithorhynchus_anatinus
ENSFALG00000012563	CHD6	98	70.365	ENSOCUG00000012394	CHD6	99	70.116	Oryctolagus_cuniculus
ENSFALG00000012563	CHD6	80	70.922	ENSORLG00020021891	chd6	95	86.600	Oryzias_latipes_hni
ENSFALG00000012563	CHD6	98	70.695	ENSOGAG00000002427	CHD6	99	70.629	Otolemur_garnettii
ENSFALG00000012563	CHD6	98	68.964	ENSOARG00000002597	CHD6	99	68.463	Ovis_aries
ENSFALG00000012563	CHD6	98	71.766	ENSPPRG00000014756	CHD6	99	71.589	Panthera_pardus
ENSFALG00000012563	CHD6	98	71.730	ENSPTIG00000011094	CHD6	99	71.553	Panthera_tigris_altaica
ENSFALG00000012563	CHD6	98	71.377	ENSPTRG00000013504	CHD6	99	88.991	Pan_troglodytes
ENSFALG00000012563	CHD6	98	71.615	ENSPANG00000025554	CHD6	99	89.174	Papio_anubis
ENSFALG00000012563	CHD6	76	78.050	ENSPKIG00000005578	chd6	77	76.662	Paramormyrops_kingsleyae
ENSFALG00000012563	CHD6	73	76.726	ENSPMGG00000014877	chd6	85	76.797	Periophthalmus_magnuspinnatus
ENSFALG00000012563	CHD6	99	71.913	ENSPCIG00000028037	CHD6	99	72.888	Phascolarctos_cinereus
ENSFALG00000012563	CHD6	67	74.603	ENSPLAG00000003128	chd6	68	74.121	Poecilia_latipinna
ENSFALG00000012563	CHD6	68	74.603	ENSPREG00000022653	chd6	99	86.996	Poecilia_reticulata
ENSFALG00000012563	CHD6	98	71.144	ENSPPYG00000011016	CHD6	99	70.850	Pongo_abelii
ENSFALG00000012563	CHD6	98	71.671	ENSPCOG00000001089	CHD6	99	88.991	Propithecus_coquereli
ENSFALG00000012563	CHD6	77	75.728	ENSPNYG00000022516	chd6	75	79.313	Pundamilia_nyererei
ENSFALG00000012563	CHD6	76	75.182	ENSPNAG00000012825	chd6	75	75.098	Pygocentrus_nattereri
ENSFALG00000012563	CHD6	99	70.022	ENSRNOG00000016744	Chd6	99	70.389	Rattus_norvegicus
ENSFALG00000012563	CHD6	98	71.055	ENSSBOG00000022089	CHD6	99	88.991	Saimiri_boliviensis_boliviensis
ENSFALG00000012563	CHD6	99	72.655	ENSSHAG00000017072	CHD6	99	72.842	Sarcophilus_harrisii
ENSFALG00000012563	CHD6	78	75.922	ENSSFOG00015012920	chd6	74	79.129	Scleropages_formosus
ENSFALG00000012563	CHD6	56	98.684	ENSSARG00000002615	-	58	98.684	Sorex_araneus
ENSFALG00000012563	CHD6	98	71.119	ENSSSCG00000007360	CHD6	99	72.287	Sus_scrofa
ENSFALG00000012563	CHD6	96	93.157	ENSTGUG00000003179	CHD6	100	93.157	Taeniopygia_guttata
ENSFALG00000012563	CHD6	72	77.147	ENSTNIG00000017487	chd6	82	76.782	Tetraodon_nigroviridis
ENSFALG00000012563	CHD6	94	75.453	ENSTTRG00000013438	CHD6	95	75.386	Tursiops_truncatus
ENSFALG00000012563	CHD6	99	69.410	ENSUAMG00000024036	CHD6	95	91.506	Ursus_americanus
ENSFALG00000012563	CHD6	99	70.622	ENSUMAG00000002017	CHD6	95	91.506	Ursus_maritimus
ENSFALG00000012563	CHD6	86	78.195	ENSVPAG00000007941	CHD6	87	77.580	Vicugna_pacos
ENSFALG00000012563	CHD6	98	71.527	ENSVVUG00000029164	CHD6	99	71.491	Vulpes_vulpes
ENSFALG00000012563	CHD6	87	71.010	ENSXETG00000021445	chd6	88	71.240	Xenopus_tropicalis