EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFALG00000012906 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 2229 bases
Position: chrJH603331.1:1435397-1437625
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000013475	zf-CCCH	PF00642.24	4.1e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000013531	-	663	-	ENSFALP00000013475	153 (aa)	-	U3KEM1

Gene Model

Click here to download ENSFALG00000012906's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000012906's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFALG00000012906	-	100	57.558	ENSFALG00000013799	CPSF4	68	57.558

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000012906	-	100	56.977	ENSG00000160917	CPSF4	94	67.857	Homo_sapiens
ENSFALG00000012906	-	100	56.977	ENSAMEG00000006252	CPSF4	61	56.977	Ailuropoda_melanoleuca
ENSFALG00000012906	-	100	55.814	ENSACIG00000009248	cpsf4	68	55.814	Amphilophus_citrinellus
ENSFALG00000012906	-	100	55.814	ENSAOCG00000019616	cpsf4	62	55.814	Amphiprion_ocellaris
ENSFALG00000012906	-	100	55.814	ENSAPEG00000011679	cpsf4	62	55.814	Amphiprion_percula
ENSFALG00000012906	-	100	56.395	ENSATEG00000007010	cpsf4	67	56.395	Anabas_testudineus
ENSFALG00000012906	-	100	56.977	ENSACAG00000012941	CPSF4	55	56.977	Anolis_carolinensis
ENSFALG00000012906	-	100	56.977	ENSANAG00000021360	CPSF4	61	56.977	Aotus_nancymaae
ENSFALG00000012906	-	100	55.814	ENSACLG00000010374	cpsf4	73	55.814	Astatotilapia_calliptera
ENSFALG00000012906	-	100	56.977	ENSAMXG00000031647	cpsf4	65	56.977	Astyanax_mexicanus
ENSFALG00000012906	-	100	56.977	ENSBTAG00000002090	CPSF4	68	56.977	Bos_taurus
ENSFALG00000012906	-	100	56.977	ENSCJAG00000015826	CPSF4	62	56.977	Callithrix_jacchus
ENSFALG00000012906	-	100	60.000	ENSCAFG00000015036	CPSF4	99	60.000	Canis_familiaris
ENSFALG00000012906	-	100	60.606	ENSCAFG00020014462	CPSF4	60	60.606	Canis_lupus_dingo
ENSFALG00000012906	-	100	56.977	ENSCHIG00000014313	CPSF4	61	56.977	Capra_hircus
ENSFALG00000012906	-	73	62.162	ENSTSYG00000008195	-	64	51.316	Carlito_syrichta
ENSFALG00000012906	-	100	51.744	ENSTSYG00000014604	-	67	51.744	Carlito_syrichta
ENSFALG00000012906	-	100	57.558	ENSTSYG00000005712	-	68	57.558	Carlito_syrichta
ENSFALG00000012906	-	73	67.857	ENSCAPG00000013881	CPSF4	54	59.722	Cavia_aperea
ENSFALG00000012906	-	100	56.977	ENSCPOG00000001783	CPSF4	68	56.977	Cavia_porcellus
ENSFALG00000012906	-	100	56.977	ENSCCAG00000028291	CPSF4	61	56.977	Cebus_capucinus
ENSFALG00000012906	-	100	56.977	ENSCATG00000038440	CPSF4	71	56.977	Cercocebus_atys
ENSFALG00000012906	-	100	56.977	ENSCLAG00000007050	CPSF4	61	56.977	Chinchilla_lanigera
ENSFALG00000012906	-	100	56.977	ENSCSAG00000017795	CPSF4	61	56.977	Chlorocebus_sabaeus
ENSFALG00000012906	-	100	60.465	ENSCPBG00000010269	-	99	60.465	Chrysemys_picta_bellii
ENSFALG00000012906	-	100	50.289	ENSCING00000021080	-	63	50.289	Ciona_intestinalis
ENSFALG00000012906	-	100	50.867	ENSCSAVG00000011469	-	57	50.867	Ciona_savignyi
ENSFALG00000012906	-	100	56.977	ENSCANG00000019384	CPSF4	71	56.977	Colobus_angolensis_palliatus
ENSFALG00000012906	-	100	56.977	ENSCGRG00001024184	Cpsf4	68	56.977	Cricetulus_griseus_chok1gshd
ENSFALG00000012906	-	100	56.977	ENSCGRG00000013892	Cpsf4	61	56.977	Cricetulus_griseus_crigri
ENSFALG00000012906	-	100	56.395	ENSCSEG00000019055	cpsf4	62	56.395	Cynoglossus_semilaevis
ENSFALG00000012906	-	100	57.558	ENSCVAG00000016528	cpsf4	62	57.558	Cyprinodon_variegatus
ENSFALG00000012906	-	100	56.395	ENSDARG00000020217	cpsf4	61	56.395	Danio_rerio
ENSFALG00000012906	-	100	56.977	ENSDNOG00000006344	CPSF4	61	56.977	Dasypus_novemcinctus
ENSFALG00000012906	-	100	49.425	FBgn0015621	Clp	56	49.425	Drosophila_melanogaster
ENSFALG00000012906	-	100	56.395	ENSETEG00000002608	CPSF4	61	56.395	Echinops_telfairi
ENSFALG00000012906	-	100	55.814	ENSEBUG00000012552	cpsf4	68	55.814	Eptatretus_burgeri
ENSFALG00000012906	-	100	56.977	ENSEASG00005002487	CPSF4	68	56.977	Equus_asinus_asinus
ENSFALG00000012906	-	100	56.977	ENSECAG00000007525	CPSF4	61	56.977	Equus_caballus
ENSFALG00000012906	-	100	56.395	ENSELUG00000011481	cpsf4	61	56.395	Esox_lucius
ENSFALG00000012906	-	100	56.977	ENSFCAG00000015070	CPSF4	61	56.977	Felis_catus
ENSFALG00000012906	-	84	57.534	ENSFDAG00000014092	CPSF4	57	57.534	Fukomys_damarensis
ENSFALG00000012906	-	100	56.977	ENSFHEG00000010880	cpsf4	62	56.977	Fundulus_heteroclitus
ENSFALG00000012906	-	100	55.172	ENSGMOG00000002330	cpsf4	65	55.172	Gadus_morhua
ENSFALG00000012906	-	100	57.558	ENSGALG00000004714	CPSF4	68	57.558	Gallus_gallus
ENSFALG00000012906	-	100	56.977	ENSGAFG00000010580	cpsf4	63	56.977	Gambusia_affinis
ENSFALG00000012906	-	100	55.747	ENSGACG00000007792	cpsf4	66	55.747	Gasterosteus_aculeatus
ENSFALG00000012906	-	100	61.047	ENSGAGG00000020579	-	92	61.047	Gopherus_agassizii
ENSFALG00000012906	-	100	57.558	ENSGAGG00000021835	CPSF4	61	57.558	Gopherus_agassizii
ENSFALG00000012906	-	100	56.977	ENSGGOG00000015131	CPSF4	61	56.977	Gorilla_gorilla
ENSFALG00000012906	-	100	55.814	ENSHBUG00000013699	cpsf4	62	55.814	Haplochromis_burtoni
ENSFALG00000012906	-	100	56.977	ENSHGLG00000017150	CPSF4	61	56.977	Heterocephalus_glaber_female
ENSFALG00000012906	-	100	39.306	ENSHGLG00100017302	-	74	39.306	Heterocephalus_glaber_male
ENSFALG00000012906	-	100	55.233	ENSHCOG00000004397	cpsf4	62	55.233	Hippocampus_comes
ENSFALG00000012906	-	100	55.233	ENSIPUG00000017147	cpsf4	61	55.233	Ictalurus_punctatus
ENSFALG00000012906	-	100	56.977	ENSSTOG00000001688	CPSF4	68	56.977	Ictidomys_tridecemlineatus
ENSFALG00000012906	-	100	56.977	ENSJJAG00000019426	Cpsf4	61	56.977	Jaculus_jaculus
ENSFALG00000012906	-	100	56.395	ENSKMAG00000015642	cpsf4	62	56.395	Kryptolebias_marmoratus
ENSFALG00000012906	-	100	58.721	ENSLACG00000010938	CPSF4	61	58.721	Latimeria_chalumnae
ENSFALG00000012906	-	100	55.233	ENSLACG00000018470	-	68	55.233	Latimeria_chalumnae
ENSFALG00000012906	-	100	56.395	ENSLOCG00000004814	cpsf4	61	56.395	Lepisosteus_oculatus
ENSFALG00000012906	-	100	56.977	ENSLAFG00000000159	CPSF4	61	56.977	Loxodonta_africana
ENSFALG00000012906	-	100	56.977	ENSMFAG00000001462	CPSF4	71	56.977	Macaca_fascicularis
ENSFALG00000012906	-	100	56.977	ENSMMUG00000019191	CPSF4	61	56.977	Macaca_mulatta
ENSFALG00000012906	-	100	56.977	ENSMNEG00000032306	CPSF4	71	56.977	Macaca_nemestrina
ENSFALG00000012906	-	100	56.977	ENSMLEG00000034721	CPSF4	71	56.977	Mandrillus_leucophaeus
ENSFALG00000012906	-	100	55.814	ENSMAMG00000006244	cpsf4	62	55.814	Mastacembelus_armatus
ENSFALG00000012906	-	100	55.814	ENSMZEG00005007515	cpsf4	62	55.814	Maylandia_zebra
ENSFALG00000012906	-	73	67.857	ENSMGAG00000004235	CPSF4	50	67.857	Meleagris_gallopavo
ENSFALG00000012906	-	100	56.977	ENSMAUG00000021253	Cpsf4	61	56.977	Mesocricetus_auratus
ENSFALG00000012906	-	100	56.977	ENSMICG00000017429	CPSF4	61	56.977	Microcebus_murinus
ENSFALG00000012906	-	100	56.977	ENSMOCG00000014901	Cpsf4	61	56.977	Microtus_ochrogaster
ENSFALG00000012906	-	100	57.831	ENSMMOG00000001813	cpsf4	95	57.831	Mola_mola
ENSFALG00000012906	-	100	57.558	ENSMODG00000001367	CPSF4	61	57.558	Monodelphis_domestica
ENSFALG00000012906	-	100	62.420	ENSMALG00000012611	cpsf4	60	62.420	Monopterus_albus
ENSFALG00000012906	-	100	56.977	MGP_CAROLIEiJ_G0028012	Cpsf4	68	56.977	Mus_caroli
ENSFALG00000012906	-	100	56.977	ENSMUSG00000029625	Cpsf4	68	56.977	Mus_musculus
ENSFALG00000012906	-	100	56.977	MGP_PahariEiJ_G0024581	Cpsf4	68	56.977	Mus_pahari
ENSFALG00000012906	-	100	56.977	MGP_SPRETEiJ_G0029013	Cpsf4	68	56.977	Mus_spretus
ENSFALG00000012906	-	100	56.977	ENSMPUG00000016508	CPSF4	61	56.977	Mustela_putorius_furo
ENSFALG00000012906	-	73	68.468	ENSMLUG00000010980	CPSF4	50	67.857	Myotis_lucifugus
ENSFALG00000012906	-	100	56.977	ENSNGAG00000001567	Cpsf4	61	56.977	Nannospalax_galili
ENSFALG00000012906	-	88	55.263	ENSNBRG00000003943	cpsf4	59	55.263	Neolamprologus_brichardi
ENSFALG00000012906	-	100	56.977	ENSNLEG00000011074	CPSF4	68	56.977	Nomascus_leucogenys
ENSFALG00000012906	-	100	57.558	ENSMEUG00000006955	CPSF4	61	57.558	Notamacropus_eugenii
ENSFALG00000012906	-	100	56.977	ENSOPRG00000013663	CPSF4	61	56.977	Ochotona_princeps
ENSFALG00000012906	-	100	49.375	ENSODEG00000009779	-	64	48.428	Octodon_degus
ENSFALG00000012906	-	100	57.962	ENSODEG00000018283	-	60	57.962	Octodon_degus
ENSFALG00000012906	-	100	56.977	ENSODEG00000011181	-	61	56.977	Octodon_degus
ENSFALG00000012906	-	100	55.814	ENSONIG00000008495	cpsf4	62	55.814	Oreochromis_niloticus
ENSFALG00000012906	-	100	59.281	ENSOANG00000009568	-	59	59.281	Ornithorhynchus_anatinus
ENSFALG00000012906	-	100	56.977	ENSORLG00000022798	cpsf4	62	56.977	Oryzias_latipes
ENSFALG00000012906	-	100	56.977	ENSORLG00020008548	cpsf4	62	56.977	Oryzias_latipes_hni
ENSFALG00000012906	-	100	56.395	ENSORLG00015019575	cpsf4	62	56.395	Oryzias_latipes_hsok
ENSFALG00000012906	-	100	55.814	ENSOMEG00000005176	cpsf4	62	55.814	Oryzias_melastigma
ENSFALG00000012906	-	100	56.977	ENSOGAG00000010884	CPSF4	61	56.977	Otolemur_garnettii
ENSFALG00000012906	-	100	52.907	ENSOARG00000018668	CPSF4	60	52.907	Ovis_aries
ENSFALG00000012906	-	100	56.977	ENSPPAG00000043355	CPSF4	61	56.977	Pan_paniscus
ENSFALG00000012906	-	100	56.977	ENSPPRG00000003134	CPSF4	61	56.977	Panthera_pardus
ENSFALG00000012906	-	100	56.977	ENSPTRG00000019453	CPSF4	61	56.977	Pan_troglodytes
ENSFALG00000012906	-	100	56.977	ENSPANG00000023123	CPSF4	71	56.977	Papio_anubis
ENSFALG00000012906	-	100	55.814	ENSPKIG00000014278	cpsf4	60	55.814	Paramormyrops_kingsleyae
ENSFALG00000012906	-	73	69.369	ENSPSIG00000018198	-	54	69.369	Pelodiscus_sinensis
ENSFALG00000012906	-	100	58.537	ENSPMGG00000017735	cpsf4	68	58.537	Periophthalmus_magnuspinnatus
ENSFALG00000012906	-	100	56.977	ENSPEMG00000004508	Cpsf4	61	56.977	Peromyscus_maniculatus_bairdii
ENSFALG00000012906	-	100	57.558	ENSPCIG00000024776	CPSF4	61	57.558	Phascolarctos_cinereus
ENSFALG00000012906	-	100	56.977	ENSPFOG00000014912	cpsf4	63	56.977	Poecilia_formosa
ENSFALG00000012906	-	100	56.977	ENSPLAG00000009599	cpsf4	67	56.977	Poecilia_latipinna
ENSFALG00000012906	-	100	56.977	ENSPMEG00000009790	cpsf4	63	56.977	Poecilia_mexicana
ENSFALG00000012906	-	100	56.977	ENSPREG00000018166	cpsf4	63	56.977	Poecilia_reticulata
ENSFALG00000012906	-	100	56.977	ENSPCAG00000001892	CPSF4	61	56.977	Procavia_capensis
ENSFALG00000012906	-	100	61.111	ENSPCOG00000012771	CPSF4	60	61.728	Propithecus_coquereli
ENSFALG00000012906	-	100	56.977	ENSPVAG00000007531	CPSF4	61	56.977	Pteropus_vampyrus
ENSFALG00000012906	-	100	55.814	ENSPNYG00000018559	cpsf4	62	55.814	Pundamilia_nyererei
ENSFALG00000012906	-	100	56.395	ENSPNAG00000003736	cpsf4	61	56.395	Pygocentrus_nattereri
ENSFALG00000012906	-	100	56.977	ENSRNOG00000000985	Cpsf4	68	56.977	Rattus_norvegicus
ENSFALG00000012906	-	100	56.977	ENSRROG00000040431	CPSF4	68	56.977	Rhinopithecus_roxellana
ENSFALG00000012906	-	100	56.977	ENSSBOG00000020493	CPSF4	55	67.857	Saimiri_boliviensis_boliviensis
ENSFALG00000012906	-	100	57.558	ENSSHAG00000011533	CPSF4	61	57.558	Sarcophilus_harrisii
ENSFALG00000012906	-	100	56.395	ENSSFOG00015007883	cpsf4	60	56.395	Scleropages_formosus
ENSFALG00000012906	-	100	55.814	ENSSMAG00000006374	cpsf4	68	55.814	Scophthalmus_maximus
ENSFALG00000012906	-	100	55.814	ENSSDUG00000018887	cpsf4	62	55.814	Seriola_dumerili
ENSFALG00000012906	-	100	55.814	ENSSLDG00000019078	cpsf4	62	55.814	Seriola_lalandi_dorsalis
ENSFALG00000012906	-	100	57.558	ENSSPUG00000003549	CPSF4	61	57.558	Sphenodon_punctatus
ENSFALG00000012906	-	100	58.721	ENSSPUG00000014803	-	74	58.721	Sphenodon_punctatus
ENSFALG00000012906	-	100	55.814	ENSSPAG00000006174	cpsf4	69	55.814	Stegastes_partitus
ENSFALG00000012906	-	100	56.977	ENSSSCG00000026896	CPSF4	68	56.977	Sus_scrofa
ENSFALG00000012906	-	100	56.897	ENSTGUG00000007552	CPSF4	68	56.897	Taeniopygia_guttata
ENSFALG00000012906	-	100	54.651	ENSTRUG00000024220	cpsf4	63	54.651	Takifugu_rubripes
ENSFALG00000012906	-	100	54.651	ENSTNIG00000006265	cpsf4	63	54.651	Tetraodon_nigroviridis
ENSFALG00000012906	-	100	56.977	ENSTTRG00000003007	CPSF4	61	56.977	Tursiops_truncatus
ENSFALG00000012906	-	100	56.977	ENSUAMG00000008051	CPSF4	64	56.977	Ursus_americanus
ENSFALG00000012906	-	100	56.977	ENSUMAG00000009474	CPSF4	68	56.977	Ursus_maritimus
ENSFALG00000012906	-	100	56.977	ENSVVUG00000008824	CPSF4	68	56.977	Vulpes_vulpes
ENSFALG00000012906	-	100	56.571	ENSXETG00000009892	cpsf4	63	56.571	Xenopus_tropicalis
ENSFALG00000012906	-	100	59.884	ENSXETG00000004641	cpsf4l	61	59.884	Xenopus_tropicalis
ENSFALG00000012906	-	100	56.977	ENSXCOG00000016040	cpsf4	63	56.977	Xiphophorus_couchianus
ENSFALG00000012906	-	100	56.977	ENSXMAG00000024670	cpsf4	63	56.977	Xiphophorus_maculatus