EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFALG00000013565 (Gene tree)
Gene ID: -
Gene Symbol: TARBP1
Alias: TRM3|TRMT3|TRP-185
Full Name: TAR (HIV-1) RNA binding protein 1
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 31748 bases
Position: chrJH603172.1:25329514-25361261
Accession: 101815392
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000014158	SpoU_methylase	PF00588.19	7.6e-30	1	1
ENSFALP00000014160	SpoU_methylase	PF00588.19	7.8e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000014218	TARBP1-202	4193	XM_005043821	ENSFALP00000014160	1317 (aa)	XP_005043878	U3KGK6
ENSFALT00000014216	TARBP1-201	4473	-	ENSFALP00000014158	1311 (aa)	-	U3KGK4

Gene Model

Click here to download ENSFALG00000013565's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000013565's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000013565	TARBP1	99	68.807	ENSG00000059588	TARBP1	80	68.865	Homo_sapiens
ENSFALG00000013565	TARBP1	99	46.506	ENSAPOG00000016419	si:dkey-85a20.4	80	46.667	Acanthochromis_polyacanthus
ENSFALG00000013565	TARBP1	99	67.634	ENSAMEG00000003359	TARBP1	95	67.791	Ailuropoda_melanoleuca
ENSFALG00000013565	TARBP1	99	45.584	ENSATEG00000020266	si:dkey-85a20.4	80	45.434	Anabas_testudineus
ENSFALG00000013565	TARBP1	99	86.784	ENSAPLG00000007666	TARBP1	99	86.769	Anas_platyrhynchos
ENSFALG00000013565	TARBP1	98	65.197	ENSACAG00000001142	TARBP1	81	65.549	Anolis_carolinensis
ENSFALG00000013565	TARBP1	98	66.486	ENSANAG00000022031	TARBP1	82	66.563	Aotus_nancymaae
ENSFALG00000013565	TARBP1	93	75.049	ENSBTAG00000004517	TARBP1	78	75.149	Bos_taurus
ENSFALG00000013565	TARBP1	99	68.018	ENSCJAG00000018155	TARBP1	80	68.175	Callithrix_jacchus
ENSFALG00000013565	TARBP1	100	67.173	ENSCAFG00000011533	TARBP1	92	67.661	Canis_familiaris
ENSFALG00000013565	TARBP1	100	67.249	ENSCAFG00020027141	TARBP1	80	67.688	Canis_lupus_dingo
ENSFALG00000013565	TARBP1	99	66.972	ENSCHIG00000011437	TARBP1	80	66.973	Capra_hircus
ENSFALG00000013565	TARBP1	99	66.923	ENSTSYG00000010382	TARBP1	96	67.336	Carlito_syrichta
ENSFALG00000013565	TARBP1	97	57.110	ENSCAPG00000010831	TARBP1	99	57.232	Cavia_aperea
ENSFALG00000013565	TARBP1	99	64.509	ENSCPOG00000013995	TARBP1	81	64.625	Cavia_porcellus
ENSFALG00000013565	TARBP1	99	68.095	ENSCCAG00000037278	TARBP1	80	68.175	Cebus_capucinus
ENSFALG00000013565	TARBP1	99	68.095	ENSCATG00000011754	TARBP1	80	68.150	Cercocebus_atys
ENSFALG00000013565	TARBP1	99	64.809	ENSCLAG00000003655	TARBP1	97	64.791	Chinchilla_lanigera
ENSFALG00000013565	TARBP1	98	68.224	ENSCSAG00000010100	TARBP1	99	68.281	Chlorocebus_sabaeus
ENSFALG00000013565	TARBP1	94	75.814	ENSCPBG00000005587	TARBP1	78	82.890	Chrysemys_picta_bellii
ENSFALG00000013565	TARBP1	99	68.144	ENSCANG00000034343	TARBP1	95	68.227	Colobus_angolensis_palliatus
ENSFALG00000013565	TARBP1	99	63.560	ENSCGRG00001016690	Tarbp1	82	63.602	Cricetulus_griseus_chok1gshd
ENSFALG00000013565	TARBP1	99	63.560	ENSCGRG00000016893	Tarbp1	89	63.154	Cricetulus_griseus_crigri
ENSFALG00000013565	TARBP1	99	42.555	ENSCSEG00000005255	si:dkey-85a20.4	80	46.902	Cynoglossus_semilaevis
ENSFALG00000013565	TARBP1	99	45.558	ENSDARG00000079055	si:dkey-85a20.4	98	54.655	Danio_rerio
ENSFALG00000013565	TARBP1	100	68.254	ENSDNOG00000008637	TARBP1	79	68.698	Dasypus_novemcinctus
ENSFALG00000013565	TARBP1	99	62.673	ENSDORG00000007984	Tarbp1	99	62.923	Dipodomys_ordii
ENSFALG00000013565	TARBP1	99	68.879	ENSEASG00005000252	TARBP1	81	68.966	Equus_asinus_asinus
ENSFALG00000013565	TARBP1	95	73.802	ENSECAG00000023673	TARBP1	79	73.802	Equus_caballus
ENSFALG00000013565	TARBP1	99	45.441	ENSELUG00000012193	si:dkey-85a20.4	81	46.061	Esox_lucius
ENSFALG00000013565	TARBP1	99	64.859	ENSFCAG00000014183	TARBP1	80	64.927	Felis_catus
ENSFALG00000013565	TARBP1	98	62.805	ENSFDAG00000001308	TARBP1	99	63.377	Fukomys_damarensis
ENSFALG00000013565	TARBP1	99	38.583	ENSFHEG00000007565	si:dkey-85a20.4	70	54.108	Fundulus_heteroclitus
ENSFALG00000013565	TARBP1	99	42.675	ENSGMOG00000004549	si:dkey-85a20.4	94	43.030	Gadus_morhua
ENSFALG00000013565	TARBP1	100	79.573	ENSGALG00000011000	TARBP1	81	79.570	Gallus_gallus
ENSFALG00000013565	TARBP1	99	46.426	ENSGAFG00000007387	si:dkey-85a20.4	80	46.515	Gambusia_affinis
ENSFALG00000013565	TARBP1	99	46.386	ENSGACG00000005865	si:dkey-85a20.4	93	46.415	Gasterosteus_aculeatus
ENSFALG00000013565	TARBP1	99	77.269	ENSGAGG00000012102	TARBP1	84	77.206	Gopherus_agassizii
ENSFALG00000013565	TARBP1	99	66.183	ENSGGOG00000022879	TARBP1	94	66.182	Gorilla_gorilla
ENSFALG00000013565	TARBP1	99	47.758	ENSHBUG00000008877	si:dkey-85a20.4	80	47.849	Haplochromis_burtoni
ENSFALG00000013565	TARBP1	99	65.677	ENSHGLG00000011592	TARBP1	81	65.876	Heterocephalus_glaber_female
ENSFALG00000013565	TARBP1	99	65.649	ENSHGLG00100015169	TARBP1	89	65.798	Heterocephalus_glaber_male
ENSFALG00000013565	TARBP1	98	45.073	ENSIPUG00000005249	si:dkey-85a20.4	78	45.538	Ictalurus_punctatus
ENSFALG00000013565	TARBP1	99	63.336	ENSSTOG00000032291	TARBP1	93	63.552	Ictidomys_tridecemlineatus
ENSFALG00000013565	TARBP1	99	60.853	ENSJJAG00000017840	Tarbp1	89	61.073	Jaculus_jaculus
ENSFALG00000013565	TARBP1	95	48.193	ENSKMAG00000017546	si:dkey-85a20.4	79	48.193	Kryptolebias_marmoratus
ENSFALG00000013565	TARBP1	74	50.649	ENSLBEG00000012132	si:dkey-85a20.4	68	50.672	Labrus_bergylta
ENSFALG00000013565	TARBP1	99	57.208	ENSLACG00000004337	TARBP1	80	57.165	Latimeria_chalumnae
ENSFALG00000013565	TARBP1	99	50.038	ENSLOCG00000016214	si:dkey-85a20.4	80	50.458	Lepisosteus_oculatus
ENSFALG00000013565	TARBP1	99	68.012	ENSLAFG00000011394	TARBP1	83	68.015	Loxodonta_africana
ENSFALG00000013565	TARBP1	99	65.800	ENSMFAG00000041068	TARBP1	81	65.848	Macaca_fascicularis
ENSFALG00000013565	TARBP1	99	65.800	ENSMMUG00000021703	TARBP1	80	65.848	Macaca_mulatta
ENSFALG00000013565	TARBP1	99	68.095	ENSMNEG00000045002	TARBP1	80	68.150	Macaca_nemestrina
ENSFALG00000013565	TARBP1	99	67.942	ENSMLEG00000044182	TARBP1	96	67.997	Mandrillus_leucophaeus
ENSFALG00000013565	TARBP1	99	46.667	ENSMAMG00000021760	si:dkey-85a20.4	81	46.621	Mastacembelus_armatus
ENSFALG00000013565	TARBP1	99	47.590	ENSMZEG00005005751	si:dkey-85a20.4	80	47.626	Maylandia_zebra
ENSFALG00000013565	TARBP1	99	63.428	ENSMAUG00000020968	Tarbp1	82	63.469	Mesocricetus_auratus
ENSFALG00000013565	TARBP1	99	60.883	ENSMICG00000015280	TARBP1	79	61.103	Microcebus_murinus
ENSFALG00000013565	TARBP1	99	62.872	ENSMOCG00000004128	Tarbp1	82	62.912	Microtus_ochrogaster
ENSFALG00000013565	TARBP1	99	43.665	ENSMMOG00000007795	si:dkey-85a20.4	80	43.812	Mola_mola
ENSFALG00000013565	TARBP1	99	69.709	ENSMODG00000008504	TARBP1	79	69.699	Monodelphis_domestica
ENSFALG00000013565	TARBP1	99	45.641	ENSMALG00000002916	si:dkey-85a20.4	80	46.008	Monopterus_albus
ENSFALG00000013565	TARBP1	99	63.206	MGP_CAROLIEiJ_G0031729	Tarbp1	77	75.889	Mus_caroli
ENSFALG00000013565	TARBP1	99	62.969	ENSMUSG00000090290	Tarbp1	82	63.008	Mus_musculus
ENSFALG00000013565	TARBP1	99	63.110	MGP_PahariEiJ_G0023326	Tarbp1	82	63.198	Mus_pahari
ENSFALG00000013565	TARBP1	99	63.045	MGP_SPRETEiJ_G0032846	Tarbp1	82	63.085	Mus_spretus
ENSFALG00000013565	TARBP1	95	66.587	ENSMPUG00000002802	TARBP1	99	67.342	Mustela_putorius_furo
ENSFALG00000013565	TARBP1	100	62.538	ENSMLUG00000002414	TARBP1	95	62.938	Myotis_lucifugus
ENSFALG00000013565	TARBP1	99	68.477	ENSNLEG00000002518	TARBP1	80	68.558	Nomascus_leucogenys
ENSFALG00000013565	TARBP1	79	73.045	ENSOPRG00000013822	TARBP1	63	73.277	Ochotona_princeps
ENSFALG00000013565	TARBP1	99	65.241	ENSODEG00000005238	TARBP1	84	65.261	Octodon_degus
ENSFALG00000013565	TARBP1	99	47.010	ENSONIG00000009789	si:dkey-85a20.4	93	47.226	Oreochromis_niloticus
ENSFALG00000013565	TARBP1	99	66.005	ENSOCUG00000017418	TARBP1	80	66.232	Oryctolagus_cuniculus
ENSFALG00000013565	TARBP1	99	44.503	ENSORLG00000010529	si:dkey-85a20.4	80	44.985	Oryzias_latipes
ENSFALG00000013565	TARBP1	99	44.654	ENSORLG00020019264	si:dkey-85a20.4	80	45.137	Oryzias_latipes_hni
ENSFALG00000013565	TARBP1	99	44.278	ENSORLG00015003276	si:dkey-85a20.4	80	44.671	Oryzias_latipes_hsok
ENSFALG00000013565	TARBP1	99	64.733	ENSOGAG00000002379	TARBP1	80	64.801	Otolemur_garnettii
ENSFALG00000013565	TARBP1	99	66.794	ENSOARG00000003434	TARBP1	87	66.138	Ovis_aries
ENSFALG00000013565	TARBP1	99	68.630	ENSPPAG00000028097	TARBP1	95	68.712	Pan_paniscus
ENSFALG00000013565	TARBP1	99	64.297	ENSPPRG00000013561	TARBP1	84	64.132	Panthera_pardus
ENSFALG00000013565	TARBP1	99	67.125	ENSPTIG00000009281	TARBP1	97	67.204	Panthera_tigris_altaica
ENSFALG00000013565	TARBP1	99	68.783	ENSPTRG00000002124	TARBP1	80	68.788	Pan_troglodytes
ENSFALG00000013565	TARBP1	99	68.248	ENSPANG00000021933	TARBP1	80	68.304	Papio_anubis
ENSFALG00000013565	TARBP1	99	47.285	ENSPKIG00000016716	si:dkey-85a20.4	79	47.352	Paramormyrops_kingsleyae
ENSFALG00000013565	TARBP1	98	75.816	ENSPSIG00000010699	TARBP1	99	76.457	Pelodiscus_sinensis
ENSFALG00000013565	TARBP1	99	63.838	ENSPEMG00000006888	Tarbp1	86	63.929	Peromyscus_maniculatus_bairdii
ENSFALG00000013565	TARBP1	90	85.714	ENSPCIG00000029710	TARBP1	77	86.224	Phascolarctos_cinereus
ENSFALG00000013565	TARBP1	99	46.131	ENSPFOG00000013020	si:dkey-85a20.4	93	46.218	Poecilia_formosa
ENSFALG00000013565	TARBP1	99	46.241	ENSPLAG00000006044	si:dkey-85a20.4	80	46.329	Poecilia_latipinna
ENSFALG00000013565	TARBP1	99	46.125	ENSPMEG00000017857	si:dkey-85a20.4	80	46.212	Poecilia_mexicana
ENSFALG00000013565	TARBP1	99	46.386	ENSPREG00000022753	si:dkey-85a20.4	80	46.475	Poecilia_reticulata
ENSFALG00000013565	TARBP1	88	78.431	ENSPPYG00000000102	TARBP1	78	78.431	Pongo_abelii
ENSFALG00000013565	TARBP1	82	85.714	ENSPCAG00000004808	TARBP1	66	88.889	Procavia_capensis
ENSFALG00000013565	TARBP1	99	65.118	ENSPCOG00000005666	TARBP1	80	65.314	Propithecus_coquereli
ENSFALG00000013565	TARBP1	99	55.335	ENSPVAG00000014798	TARBP1	81	55.726	Pteropus_vampyrus
ENSFALG00000013565	TARBP1	99	46.722	ENSPNYG00000019135	si:dkey-85a20.4	79	46.894	Pundamilia_nyererei
ENSFALG00000013565	TARBP1	99	59.618	ENSRNOG00000053574	Tarbp1	82	59.648	Rattus_norvegicus
ENSFALG00000013565	TARBP1	99	63.588	ENSRBIG00000043362	TARBP1	88	63.650	Rhinopithecus_bieti
ENSFALG00000013565	TARBP1	99	68.220	ENSRROG00000029527	TARBP1	84	68.304	Rhinopithecus_roxellana
ENSFALG00000013565	TARBP1	99	68.015	ENSSBOG00000034503	TARBP1	93	68.175	Saimiri_boliviensis_boliviensis
ENSFALG00000013565	TARBP1	99	69.406	ENSSHAG00000000013	TARBP1	96	69.396	Sarcophilus_harrisii
ENSFALG00000013565	TARBP1	99	46.026	ENSSFOG00015002660	si:dkey-85a20.4	97	46.171	Scleropages_formosus
ENSFALG00000013565	TARBP1	99	47.006	ENSSMAG00000007081	si:dkey-85a20.4	79	47.130	Scophthalmus_maximus
ENSFALG00000013565	TARBP1	99	45.080	ENSSDUG00000023566	si:dkey-85a20.4	80	45.233	Seriola_dumerili
ENSFALG00000013565	TARBP1	99	46.692	ENSSLDG00000020200	si:dkey-85a20.4	80	46.929	Seriola_lalandi_dorsalis
ENSFALG00000013565	TARBP1	94	76.744	ENSSARG00000012207	TARBP1	76	76.941	Sorex_araneus
ENSFALG00000013565	TARBP1	99	70.588	ENSSPUG00000015364	TARBP1	80	70.584	Sphenodon_punctatus
ENSFALG00000013565	TARBP1	99	46.742	ENSSPAG00000007213	si:dkey-85a20.4	80	47.099	Stegastes_partitus
ENSFALG00000013565	TARBP1	94	79.508	ENSSSCG00000010160	TARBP1	79	79.508	Sus_scrofa
ENSFALG00000013565	TARBP1	99	93.946	ENSTGUG00000010214	TARBP1	99	93.928	Taeniopygia_guttata
ENSFALG00000013565	TARBP1	99	45.909	ENSTNIG00000016586	si:dkey-85a20.4	95	46.595	Tetraodon_nigroviridis
ENSFALG00000013565	TARBP1	94	63.430	ENSTTRG00000008707	TARBP1	80	63.592	Tursiops_truncatus
ENSFALG00000013565	TARBP1	99	67.176	ENSUMAG00000006730	TARBP1	97	67.331	Ursus_maritimus
ENSFALG00000013565	TARBP1	76	85.417	ENSVPAG00000007665	TARBP1	70	88.889	Vicugna_pacos
ENSFALG00000013565	TARBP1	100	67.376	ENSVVUG00000007460	TARBP1	96	68.826	Vulpes_vulpes
ENSFALG00000013565	TARBP1	99	56.699	ENSXETG00000016224	tarbp1	97	56.231	Xenopus_tropicalis
ENSFALG00000013565	TARBP1	98	50.543	ENSXCOG00000011779	si:dkey-85a20.4	91	50.543	Xiphophorus_couchianus
ENSFALG00000013565	TARBP1	80	43.941	ENSXMAG00000009600	si:dkey-85a20.4	100	44.268	Xiphophorus_maculatus