EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFALG00000013799 (Gene tree)
Gene ID: -
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Minus strand
Length: 9461 bases
Position: chrJH603209.1:1459408-1468868
Accession: 101810258
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000014399	zf-CCCH	PF00642.24	1.2e-20	1	2
ENSFALP00000014399	zf-CCCH	PF00642.24	1.2e-20	2	2
ENSFALP00000014399	zf-CCHC	PF00098.23	2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000014459	CPSF4-201	4761	-	ENSFALP00000014399	243 (aa)	XP_005054455	U3KH95

Gene Model

Click here to download ENSFALG00000013799's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000013799's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFALG00000013799	CPSF4	68	57.558	ENSFALG00000012906	-	100	57.558

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000013799	CPSF4	100	95.082	ENSG00000160917	CPSF4	100	99.107	Homo_sapiens
ENSFALG00000013799	CPSF4	64	68.362	ENSAPOG00000004921	cpsf4	100	68.362	Acanthochromis_polyacanthus
ENSFALG00000013799	CPSF4	100	84.387	ENSAMEG00000006252	CPSF4	100	85.874	Ailuropoda_melanoleuca
ENSFALG00000013799	CPSF4	100	86.008	ENSACIG00000009248	cpsf4	100	86.008	Amphilophus_citrinellus
ENSFALG00000013799	CPSF4	100	80.377	ENSAOCG00000019616	cpsf4	100	80.377	Amphiprion_ocellaris
ENSFALG00000013799	CPSF4	100	80.377	ENSAPEG00000011679	cpsf4	100	80.377	Amphiprion_percula
ENSFALG00000013799	CPSF4	100	84.211	ENSATEG00000007010	cpsf4	100	84.211	Anabas_testudineus
ENSFALG00000013799	CPSF4	100	83.271	ENSACAG00000012941	CPSF4	89	85.874	Anolis_carolinensis
ENSFALG00000013799	CPSF4	100	86.245	ENSANAG00000021360	CPSF4	100	86.245	Aotus_nancymaae
ENSFALG00000013799	CPSF4	100	79.835	ENSACLG00000010374	cpsf4	100	79.835	Astatotilapia_calliptera
ENSFALG00000013799	CPSF4	100	79.259	ENSAMXG00000031647	cpsf4	100	80.741	Astyanax_mexicanus
ENSFALG00000013799	CPSF4	100	95.062	ENSBTAG00000002090	CPSF4	100	95.062	Bos_taurus
ENSFALG00000013799	CPSF4	100	86.245	ENSCJAG00000015826	CPSF4	100	86.245	Callithrix_jacchus
ENSFALG00000013799	CPSF4	100	84.387	ENSCAFG00000015036	CPSF4	100	85.874	Canis_familiaris
ENSFALG00000013799	CPSF4	100	78.067	ENSCAFG00020014462	CPSF4	100	79.554	Canis_lupus_dingo
ENSFALG00000013799	CPSF4	100	84.387	ENSCHIG00000014313	CPSF4	100	85.874	Capra_hircus
ENSFALG00000013799	CPSF4	100	95.492	ENSTSYG00000005712	-	100	95.492	Carlito_syrichta
ENSFALG00000013799	CPSF4	100	86.939	ENSTSYG00000014604	-	100	86.939	Carlito_syrichta
ENSFALG00000013799	CPSF4	88	88.426	ENSTSYG00000008195	-	99	88.000	Carlito_syrichta
ENSFALG00000013799	CPSF4	79	82.110	ENSCAPG00000013881	CPSF4	87	83.945	Cavia_aperea
ENSFALG00000013799	CPSF4	100	94.672	ENSCPOG00000001783	CPSF4	100	94.672	Cavia_porcellus
ENSFALG00000013799	CPSF4	100	86.245	ENSCCAG00000028291	CPSF4	100	86.245	Cebus_capucinus
ENSFALG00000013799	CPSF4	100	89.344	ENSCATG00000038440	CPSF4	100	89.344	Cercocebus_atys
ENSFALG00000013799	CPSF4	100	84.387	ENSCLAG00000007050	CPSF4	100	85.874	Chinchilla_lanigera
ENSFALG00000013799	CPSF4	100	86.245	ENSCSAG00000017795	CPSF4	100	86.245	Chlorocebus_sabaeus
ENSFALG00000013799	CPSF4	78	86.574	ENSCPBG00000020869	CPSF4	100	86.574	Chrysemys_picta_bellii
ENSFALG00000013799	CPSF4	68	81.325	ENSCPBG00000010269	-	100	81.325	Chrysemys_picta_bellii
ENSFALG00000013799	CPSF4	96	55.512	ENSCING00000021080	-	97	55.118	Ciona_intestinalis
ENSFALG00000013799	CPSF4	96	52.650	ENSCSAVG00000011469	-	97	52.650	Ciona_savignyi
ENSFALG00000013799	CPSF4	100	87.654	ENSCANG00000019384	CPSF4	100	87.654	Colobus_angolensis_palliatus
ENSFALG00000013799	CPSF4	100	94.672	ENSCGRG00001024184	Cpsf4	100	94.672	Cricetulus_griseus_chok1gshd
ENSFALG00000013799	CPSF4	100	84.387	ENSCGRG00000013892	Cpsf4	100	85.874	Cricetulus_griseus_crigri
ENSFALG00000013799	CPSF4	100	79.245	ENSCSEG00000019055	cpsf4	100	79.245	Cynoglossus_semilaevis
ENSFALG00000013799	CPSF4	100	80.000	ENSCVAG00000016528	cpsf4	100	80.000	Cyprinodon_variegatus
ENSFALG00000013799	CPSF4	100	77.122	ENSDARG00000020217	cpsf4	100	79.336	Danio_rerio
ENSFALG00000013799	CPSF4	100	86.245	ENSDNOG00000006344	CPSF4	100	86.245	Dasypus_novemcinctus
ENSFALG00000013799	CPSF4	79	82.028	ENSDORG00000000742	Cpsf4	100	83.871	Dipodomys_ordii
ENSFALG00000013799	CPSF4	100	52.508	FBgn0015621	Clp	99	53.512	Drosophila_melanogaster
ENSFALG00000013799	CPSF4	77	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSFALG00000013799	CPSF4	99	72.131	ENSEBUG00000012552	cpsf4	98	72.131	Eptatretus_burgeri
ENSFALG00000013799	CPSF4	100	94.672	ENSEASG00005002487	CPSF4	100	94.672	Equus_asinus_asinus
ENSFALG00000013799	CPSF4	100	84.387	ENSECAG00000007525	CPSF4	100	85.874	Equus_caballus
ENSFALG00000013799	CPSF4	59	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSFALG00000013799	CPSF4	100	78.676	ENSELUG00000011481	cpsf4	100	78.676	Esox_lucius
ENSFALG00000013799	CPSF4	100	84.387	ENSFCAG00000015070	CPSF4	100	85.874	Felis_catus
ENSFALG00000013799	CPSF4	89	83.128	ENSFDAG00000014092	CPSF4	100	84.774	Fukomys_damarensis
ENSFALG00000013799	CPSF4	100	79.245	ENSFHEG00000010880	cpsf4	100	79.245	Fundulus_heteroclitus
ENSFALG00000013799	CPSF4	100	81.783	ENSGMOG00000002330	cpsf4	100	81.783	Gadus_morhua
ENSFALG00000013799	CPSF4	100	98.354	ENSGALG00000004714	CPSF4	100	98.354	Gallus_gallus
ENSFALG00000013799	CPSF4	65	39.326	ENSGALG00000004441	-	92	39.326	Gallus_gallus
ENSFALG00000013799	CPSF4	100	80.303	ENSGAFG00000010580	cpsf4	100	80.303	Gambusia_affinis
ENSFALG00000013799	CPSF4	100	81.496	ENSGACG00000007792	cpsf4	100	81.496	Gasterosteus_aculeatus
ENSFALG00000013799	CPSF4	75	77.473	ENSGAGG00000020579	-	100	77.473	Gopherus_agassizii
ENSFALG00000013799	CPSF4	100	88.104	ENSGAGG00000021835	CPSF4	100	88.104	Gopherus_agassizii
ENSFALG00000013799	CPSF4	100	86.245	ENSGGOG00000015131	CPSF4	100	86.245	Gorilla_gorilla
ENSFALG00000013799	CPSF4	100	79.245	ENSHBUG00000013699	cpsf4	100	79.245	Haplochromis_burtoni
ENSFALG00000013799	CPSF4	100	83.395	ENSHGLG00000017150	CPSF4	100	84.871	Heterocephalus_glaber_female
ENSFALG00000013799	CPSF4	100	59.259	ENSHGLG00100017302	-	100	59.259	Heterocephalus_glaber_male
ENSFALG00000013799	CPSF4	86	80.508	ENSHGLG00100009215	-	100	82.203	Heterocephalus_glaber_male
ENSFALG00000013799	CPSF4	100	79.245	ENSHCOG00000004397	cpsf4	100	79.245	Hippocampus_comes
ENSFALG00000013799	CPSF4	100	77.122	ENSIPUG00000017147	cpsf4	100	78.967	Ictalurus_punctatus
ENSFALG00000013799	CPSF4	100	95.062	ENSSTOG00000001688	CPSF4	100	95.062	Ictidomys_tridecemlineatus
ENSFALG00000013799	CPSF4	100	84.387	ENSJJAG00000019426	Cpsf4	100	85.874	Jaculus_jaculus
ENSFALG00000013799	CPSF4	100	78.113	ENSKMAG00000015642	cpsf4	100	78.113	Kryptolebias_marmoratus
ENSFALG00000013799	CPSF4	100	82.963	ENSLACG00000010938	CPSF4	100	82.963	Latimeria_chalumnae
ENSFALG00000013799	CPSF4	100	65.306	ENSLACG00000018470	-	100	65.306	Latimeria_chalumnae
ENSFALG00000013799	CPSF4	100	81.784	ENSLOCG00000004814	cpsf4	100	84.387	Lepisosteus_oculatus
ENSFALG00000013799	CPSF4	100	84.015	ENSLAFG00000000159	CPSF4	100	85.502	Loxodonta_africana
ENSFALG00000013799	CPSF4	100	87.654	ENSMFAG00000001462	CPSF4	100	95.288	Macaca_fascicularis
ENSFALG00000013799	CPSF4	100	86.245	ENSMMUG00000019191	CPSF4	100	86.245	Macaca_mulatta
ENSFALG00000013799	CPSF4	100	87.654	ENSMNEG00000032306	CPSF4	100	87.654	Macaca_nemestrina
ENSFALG00000013799	CPSF4	100	89.344	ENSMLEG00000034721	CPSF4	100	89.344	Mandrillus_leucophaeus
ENSFALG00000013799	CPSF4	100	80.524	ENSMAMG00000006244	cpsf4	100	80.524	Mastacembelus_armatus
ENSFALG00000013799	CPSF4	100	79.245	ENSMZEG00005007515	cpsf4	100	79.245	Maylandia_zebra
ENSFALG00000013799	CPSF4	86	98.086	ENSMGAG00000004235	CPSF4	100	98.086	Meleagris_gallopavo
ENSFALG00000013799	CPSF4	100	84.387	ENSMAUG00000021253	Cpsf4	100	85.874	Mesocricetus_auratus
ENSFALG00000013799	CPSF4	100	84.387	ENSMICG00000017429	CPSF4	100	85.874	Microcebus_murinus
ENSFALG00000013799	CPSF4	100	84.387	ENSMOCG00000014901	Cpsf4	100	85.874	Microtus_ochrogaster
ENSFALG00000013799	CPSF4	100	79.323	ENSMMOG00000001813	cpsf4	95	86.061	Mola_mola
ENSFALG00000013799	CPSF4	100	85.874	ENSMODG00000001367	CPSF4	100	87.732	Monodelphis_domestica
ENSFALG00000013799	CPSF4	100	80.150	ENSMALG00000012611	cpsf4	100	80.150	Monopterus_albus
ENSFALG00000013799	CPSF4	100	95.062	MGP_CAROLIEiJ_G0028012	Cpsf4	100	95.062	Mus_caroli
ENSFALG00000013799	CPSF4	100	95.062	ENSMUSG00000029625	Cpsf4	100	95.062	Mus_musculus
ENSFALG00000013799	CPSF4	100	95.062	MGP_PahariEiJ_G0024581	Cpsf4	100	95.062	Mus_pahari
ENSFALG00000013799	CPSF4	100	95.062	MGP_SPRETEiJ_G0029013	Cpsf4	100	95.062	Mus_spretus
ENSFALG00000013799	CPSF4	100	84.387	ENSMPUG00000016508	CPSF4	100	85.874	Mustela_putorius_furo
ENSFALG00000013799	CPSF4	86	95.215	ENSMLUG00000010980	CPSF4	100	95.215	Myotis_lucifugus
ENSFALG00000013799	CPSF4	100	84.387	ENSNGAG00000001567	Cpsf4	100	85.874	Nannospalax_galili
ENSFALG00000013799	CPSF4	90	78.838	ENSNBRG00000003943	cpsf4	98	78.838	Neolamprologus_brichardi
ENSFALG00000013799	CPSF4	100	95.082	ENSNLEG00000011074	CPSF4	100	95.082	Nomascus_leucogenys
ENSFALG00000013799	CPSF4	100	85.874	ENSMEUG00000006955	CPSF4	100	87.732	Notamacropus_eugenii
ENSFALG00000013799	CPSF4	100	84.015	ENSOPRG00000013663	CPSF4	100	85.502	Ochotona_princeps
ENSFALG00000013799	CPSF4	100	68.966	ENSODEG00000009779	-	100	68.966	Octodon_degus
ENSFALG00000013799	CPSF4	100	84.387	ENSODEG00000011181	-	100	85.874	Octodon_degus
ENSFALG00000013799	CPSF4	98	80.000	ENSODEG00000018283	-	91	80.000	Octodon_degus
ENSFALG00000013799	CPSF4	100	79.245	ENSONIG00000008495	cpsf4	100	79.245	Oreochromis_niloticus
ENSFALG00000013799	CPSF4	86	85.043	ENSOANG00000007729	CPSF4	100	85.043	Ornithorhynchus_anatinus
ENSFALG00000013799	CPSF4	100	52.878	ENSOANG00000009568	-	100	52.878	Ornithorhynchus_anatinus
ENSFALG00000013799	CPSF4	100	84.015	ENSOCUG00000002437	CPSF4	70	85.502	Oryctolagus_cuniculus
ENSFALG00000013799	CPSF4	100	79.623	ENSORLG00000022798	cpsf4	100	79.623	Oryzias_latipes
ENSFALG00000013799	CPSF4	100	79.623	ENSORLG00020008548	cpsf4	100	79.623	Oryzias_latipes_hni
ENSFALG00000013799	CPSF4	100	79.245	ENSORLG00015019575	cpsf4	100	79.245	Oryzias_latipes_hsok
ENSFALG00000013799	CPSF4	100	78.491	ENSOMEG00000005176	cpsf4	100	78.491	Oryzias_melastigma
ENSFALG00000013799	CPSF4	100	84.387	ENSOGAG00000010884	CPSF4	100	85.874	Otolemur_garnettii
ENSFALG00000013799	CPSF4	100	75.824	ENSOARG00000018668	CPSF4	100	75.824	Ovis_aries
ENSFALG00000013799	CPSF4	100	86.245	ENSPPAG00000043355	CPSF4	100	86.245	Pan_paniscus
ENSFALG00000013799	CPSF4	100	84.387	ENSPPRG00000003134	CPSF4	100	85.874	Panthera_pardus
ENSFALG00000013799	CPSF4	89	83.884	ENSPTIG00000005604	CPSF4	90	85.537	Panthera_tigris_altaica
ENSFALG00000013799	CPSF4	100	86.245	ENSPTRG00000019453	CPSF4	100	86.245	Pan_troglodytes
ENSFALG00000013799	CPSF4	100	87.654	ENSPANG00000023123	CPSF4	100	87.654	Papio_anubis
ENSFALG00000013799	CPSF4	100	81.022	ENSPKIG00000014278	cpsf4	100	81.022	Paramormyrops_kingsleyae
ENSFALG00000013799	CPSF4	78	86.111	ENSPSIG00000011229	CPSF4	100	86.111	Pelodiscus_sinensis
ENSFALG00000013799	CPSF4	79	65.285	ENSPSIG00000018198	-	100	65.285	Pelodiscus_sinensis
ENSFALG00000013799	CPSF4	100	79.424	ENSPMGG00000017735	cpsf4	100	79.424	Periophthalmus_magnuspinnatus
ENSFALG00000013799	CPSF4	100	84.387	ENSPEMG00000004508	Cpsf4	100	85.874	Peromyscus_maniculatus_bairdii
ENSFALG00000013799	CPSF4	100	85.874	ENSPCIG00000024776	CPSF4	100	87.732	Phascolarctos_cinereus
ENSFALG00000013799	CPSF4	100	80.303	ENSPFOG00000014912	cpsf4	100	80.303	Poecilia_formosa
ENSFALG00000013799	CPSF4	100	80.894	ENSPLAG00000009599	cpsf4	100	80.894	Poecilia_latipinna
ENSFALG00000013799	CPSF4	100	80.303	ENSPMEG00000009790	cpsf4	100	80.303	Poecilia_mexicana
ENSFALG00000013799	CPSF4	100	79.545	ENSPREG00000018166	cpsf4	100	79.545	Poecilia_reticulata
ENSFALG00000013799	CPSF4	86	85.043	ENSPPYG00000017378	CPSF4	100	85.043	Pongo_abelii
ENSFALG00000013799	CPSF4	100	83.271	ENSPCAG00000001892	CPSF4	100	84.758	Procavia_capensis
ENSFALG00000013799	CPSF4	100	84.387	ENSPCOG00000012771	CPSF4	100	85.874	Propithecus_coquereli
ENSFALG00000013799	CPSF4	100	77.695	ENSPVAG00000007531	CPSF4	100	79.182	Pteropus_vampyrus
ENSFALG00000013799	CPSF4	100	79.245	ENSPNYG00000018559	cpsf4	100	79.245	Pundamilia_nyererei
ENSFALG00000013799	CPSF4	100	79.630	ENSPNAG00000003736	cpsf4	100	81.852	Pygocentrus_nattereri
ENSFALG00000013799	CPSF4	100	95.062	ENSRNOG00000000985	Cpsf4	100	95.062	Rattus_norvegicus
ENSFALG00000013799	CPSF4	86	85.470	ENSRBIG00000033886	CPSF4	100	85.470	Rhinopithecus_bieti
ENSFALG00000013799	CPSF4	100	95.082	ENSRROG00000040431	CPSF4	100	95.082	Rhinopithecus_roxellana
ENSFALG00000013799	CPSF4	100	86.245	ENSSBOG00000020493	CPSF4	100	95.288	Saimiri_boliviensis_boliviensis
ENSFALG00000013799	CPSF4	100	85.874	ENSSHAG00000011533	CPSF4	100	87.732	Sarcophilus_harrisii
ENSFALG00000013799	CPSF4	100	82.609	ENSSFOG00015007883	cpsf4	100	82.609	Scleropages_formosus
ENSFALG00000013799	CPSF4	100	85.830	ENSSMAG00000006374	cpsf4	100	85.830	Scophthalmus_maximus
ENSFALG00000013799	CPSF4	100	80.075	ENSSDUG00000018887	cpsf4	100	80.075	Seriola_dumerili
ENSFALG00000013799	CPSF4	100	80.075	ENSSLDG00000019078	cpsf4	100	80.075	Seriola_lalandi_dorsalis
ENSFALG00000013799	CPSF4	86	83.333	ENSSARG00000012416	CPSF4	100	85.043	Sorex_araneus
ENSFALG00000013799	CPSF4	100	86.617	ENSSPUG00000003549	CPSF4	100	86.617	Sphenodon_punctatus
ENSFALG00000013799	CPSF4	95	64.831	ENSSPUG00000014803	-	97	64.831	Sphenodon_punctatus
ENSFALG00000013799	CPSF4	100	86.831	ENSSPAG00000006174	cpsf4	100	86.831	Stegastes_partitus
ENSFALG00000013799	CPSF4	100	94.672	ENSSSCG00000026896	CPSF4	100	94.672	Sus_scrofa
ENSFALG00000013799	CPSF4	100	98.776	ENSTGUG00000007552	CPSF4	100	98.776	Taeniopygia_guttata
ENSFALG00000013799	CPSF4	100	77.567	ENSTRUG00000024220	cpsf4	100	77.567	Takifugu_rubripes
ENSFALG00000013799	CPSF4	100	77.947	ENSTNIG00000006265	cpsf4	100	77.947	Tetraodon_nigroviridis
ENSFALG00000013799	CPSF4	86	74.786	ENSTBEG00000011406	CPSF4	100	75.641	Tupaia_belangeri
ENSFALG00000013799	CPSF4	82	100.000	ENSTTRG00000003007	CPSF4	100	75.836	Tursiops_truncatus
ENSFALG00000013799	CPSF4	91	94.570	ENSUAMG00000008051	CPSF4	85	94.570	Ursus_americanus
ENSFALG00000013799	CPSF4	100	95.062	ENSUMAG00000009474	CPSF4	100	95.062	Ursus_maritimus
ENSFALG00000013799	CPSF4	100	94.672	ENSVVUG00000008824	CPSF4	100	94.262	Vulpes_vulpes
ENSFALG00000013799	CPSF4	99	61.567	ENSXETG00000004641	cpsf4l	99	61.567	Xenopus_tropicalis
ENSFALG00000013799	CPSF4	100	80.287	ENSXETG00000009892	cpsf4	100	82.796	Xenopus_tropicalis
ENSFALG00000013799	CPSF4	100	79.924	ENSXCOG00000016040	cpsf4	100	79.924	Xiphophorus_couchianus
ENSFALG00000013799	CPSF4	100	80.303	ENSXMAG00000024670	cpsf4	100	80.303	Xiphophorus_maculatus