EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFALG00000013803 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 4631 bases
Position: chrJH603209.1:1469261-1473891
Accession: 101810068
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000014403	PPR	PF01535.20	6.1e-16	1	2
ENSFALP00000014403	PPR	PF01535.20	6.1e-16	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000014463	-	2507	XM_005054396	ENSFALP00000014403	719 (aa)	XP_005054453	U3KH99

Gene Model

Click here to download ENSFALG00000013803's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000013803's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000013803	-	92	59.077	ENSG00000106246	PTCD1	93	57.965	Homo_sapiens
ENSFALG00000013803	-	92	59.077	ENSG00000248919	ATP5MF-PTCD1	87	57.965	Homo_sapiens
ENSFALG00000013803	-	80	46.690	ENSAPOG00000010679	ptcd1	85	46.820	Acanthochromis_polyacanthus
ENSFALG00000013803	-	93	57.391	ENSAMEG00000006224	-	88	56.815	Ailuropoda_melanoleuca
ENSFALG00000013803	-	92	45.427	ENSACIG00000017861	ptcd1	85	47.317	Amphilophus_citrinellus
ENSFALG00000013803	-	84	46.393	ENSAOCG00000022617	ptcd1	81	47.887	Amphiprion_ocellaris
ENSFALG00000013803	-	90	46.319	ENSAOCG00000020741	-	80	48.567	Amphiprion_ocellaris
ENSFALG00000013803	-	87	46.929	ENSAPEG00000022632	ptcd1	80	48.398	Amphiprion_percula
ENSFALG00000013803	-	88	47.574	ENSATEG00000007016	ptcd1	85	47.574	Anabas_testudineus
ENSFALG00000013803	-	87	79.712	ENSAPLG00000006862	-	96	79.553	Anas_platyrhynchos
ENSFALG00000013803	-	90	60.976	ENSACAG00000012871	-	81	62.381	Anolis_carolinensis
ENSFALG00000013803	-	91	57.831	ENSANAG00000035790	-	94	57.101	Aotus_nancymaae
ENSFALG00000013803	-	87	46.445	ENSACLG00000002824	ptcd1	83	46.835	Astatotilapia_calliptera
ENSFALG00000013803	-	86	52.269	ENSAMXG00000037292	ptcd1	96	48.455	Astyanax_mexicanus
ENSFALG00000013803	-	94	58.041	ENSBTAG00000020440	-	76	60.568	Bos_taurus
ENSFALG00000013803	-	93	58.321	ENSCJAG00000015815	-	94	56.259	Callithrix_jacchus
ENSFALG00000013803	-	93	57.226	ENSCAFG00000015055	-	87	56.788	Canis_familiaris
ENSFALG00000013803	-	93	56.871	ENSCAFG00020014480	-	87	56.642	Canis_lupus_dingo
ENSFALG00000013803	-	94	57.416	ENSCHIG00000027000	-	87	59.812	Capra_hircus
ENSFALG00000013803	-	86	61.722	ENSTSYG00000029495	-	86	61.736	Carlito_syrichta
ENSFALG00000013803	-	92	57.508	ENSCAPG00000014660	-	98	56.593	Cavia_aperea
ENSFALG00000013803	-	92	57.949	ENSCPOG00000001780	-	93	57.771	Cavia_porcellus
ENSFALG00000013803	-	87	60.697	ENSCCAG00000034025	-	94	56.340	Cebus_capucinus
ENSFALG00000013803	-	92	58.657	ENSCATG00000040859	-	93	57.375	Cercocebus_atys
ENSFALG00000013803	-	92	58.683	ENSCLAG00000006354	-	94	58.260	Chinchilla_lanigera
ENSFALG00000013803	-	85	58.548	ENSCSAG00000017794	-	89	57.325	Chlorocebus_sabaeus
ENSFALG00000013803	-	93	67.695	ENSCPBG00000020866	-	92	67.401	Chrysemys_picta_bellii
ENSFALG00000013803	-	76	31.408	ENSCING00000007717	-	91	32.379	Ciona_intestinalis
ENSFALG00000013803	-	92	57.910	ENSCANG00000023441	-	93	56.785	Colobus_angolensis_palliatus
ENSFALG00000013803	-	89	59.480	ENSCGRG00001023686	Ptcd1	86	60.413	Cricetulus_griseus_chok1gshd
ENSFALG00000013803	-	92	58.174	ENSCGRG00000015031	Ptcd1	86	60.413	Cricetulus_griseus_crigri
ENSFALG00000013803	-	87	45.101	ENSCSEG00000002378	ptcd1	80	46.854	Cynoglossus_semilaevis
ENSFALG00000013803	-	85	49.188	ENSCVAG00000015826	ptcd1	82	48.864	Cyprinodon_variegatus
ENSFALG00000013803	-	85	48.864	ENSCVAG00000003621	ptcd1	87	48.539	Cyprinodon_variegatus
ENSFALG00000013803	-	87	50.709	ENSDARG00000076176	ptcd1	88	51.030	Danio_rerio
ENSFALG00000013803	-	88	59.657	ENSDNOG00000009957	-	87	59.502	Dasypus_novemcinctus
ENSFALG00000013803	-	85	60.577	ENSDORG00000000740	Ptcd1	93	57.312	Dipodomys_ordii
ENSFALG00000013803	-	88	40.774	ENSEBUG00000014515	ptcd1	99	41.117	Eptatretus_burgeri
ENSFALG00000013803	-	97	56.417	ENSEASG00005002480	-	98	55.814	Equus_asinus_asinus
ENSFALG00000013803	-	97	56.276	ENSECAG00000016617	-	97	55.556	Equus_caballus
ENSFALG00000013803	-	84	46.142	ENSELUG00000016517	ptcd1	82	46.314	Esox_lucius
ENSFALG00000013803	-	93	58.702	ENSFCAG00000015069	-	87	60.653	Felis_catus
ENSFALG00000013803	-	94	57.496	ENSFDAG00000006393	-	94	56.934	Fukomys_damarensis
ENSFALG00000013803	-	74	46.654	ENSFHEG00000012491	ptcd1	87	47.026	Fundulus_heteroclitus
ENSFALG00000013803	-	82	46.362	ENSGMOG00000007639	ptcd1	84	47.731	Gadus_morhua
ENSFALG00000013803	-	96	75.540	ENSGALG00000004711	-	97	75.358	Gallus_gallus
ENSFALG00000013803	-	83	47.107	ENSGAFG00000013175	ptcd1	85	46.226	Gambusia_affinis
ENSFALG00000013803	-	86	48.387	ENSGACG00000016607	ptcd1	92	47.910	Gasterosteus_aculeatus
ENSFALG00000013803	-	85	68.821	ENSGAGG00000021832	-	90	68.336	Gopherus_agassizii
ENSFALG00000013803	-	92	58.569	ENSGGOG00000015123	-	93	57.459	Gorilla_gorilla
ENSFALG00000013803	-	87	47.152	ENSHBUG00000018275	ptcd1	83	46.835	Haplochromis_burtoni
ENSFALG00000013803	-	93	57.692	ENSHGLG00000017621	-	94	57.122	Heterocephalus_glaber_female
ENSFALG00000013803	-	93	57.692	ENSHGLG00100007218	-	94	57.122	Heterocephalus_glaber_male
ENSFALG00000013803	-	87	44.268	ENSHCOG00000010784	ptcd1	81	44.799	Hippocampus_comes
ENSFALG00000013803	-	91	57.855	ENSSTOG00000001682	-	88	58.094	Ictidomys_tridecemlineatus
ENSFALG00000013803	-	92	58.309	ENSJJAG00000000319	Ptcd1	94	57.562	Jaculus_jaculus
ENSFALG00000013803	-	90	45.386	ENSKMAG00000008708	ptcd1	80	47.185	Kryptolebias_marmoratus
ENSFALG00000013803	-	92	46.142	ENSLBEG00000008061	ptcd1	85	47.235	Labrus_bergylta
ENSFALG00000013803	-	94	58.050	ENSLACG00000011172	ptcd1	85	61.426	Latimeria_chalumnae
ENSFALG00000013803	-	87	55.399	ENSLOCG00000004833	ptcd1	96	53.165	Lepisosteus_oculatus
ENSFALG00000013803	-	87	59.271	ENSLAFG00000002588	-	87	58.685	Loxodonta_africana
ENSFALG00000013803	-	92	58.507	ENSMFAG00000041324	-	93	57.227	Macaca_fascicularis
ENSFALG00000013803	-	92	58.929	ENSMMUG00000030408	-	93	57.205	Macaca_mulatta
ENSFALG00000013803	-	92	58.657	ENSMNEG00000043786	-	93	57.375	Macaca_nemestrina
ENSFALG00000013803	-	92	44.328	ENSMLEG00000031179	-	92	45.723	Mandrillus_leucophaeus
ENSFALG00000013803	-	89	47.050	ENSMAMG00000007623	ptcd1	83	46.687	Mastacembelus_armatus
ENSFALG00000013803	-	82	47.746	ENSMZEG00005012722	ptcd1	80	47.579	Maylandia_zebra
ENSFALG00000013803	-	86	79.618	ENSMGAG00000004211	-	81	79.618	Meleagris_gallopavo
ENSFALG00000013803	-	86	59.840	ENSMICG00000017428	-	86	59.936	Microcebus_murinus
ENSFALG00000013803	-	86	47.411	ENSMMOG00000020243	ptcd1	87	48.223	Mola_mola
ENSFALG00000013803	-	93	56.869	ENSMODG00000001350	-	85	59.365	Monodelphis_domestica
ENSFALG00000013803	-	83	48.435	ENSMALG00000018442	ptcd1	79	48.419	Monopterus_albus
ENSFALG00000013803	-	87	58.983	MGP_CAROLIEiJ_G0028011	Ptcd1	87	58.983	Mus_caroli
ENSFALG00000013803	-	87	59.141	ENSMUSG00000029624	Ptcd1	87	59.355	Mus_musculus
ENSFALG00000013803	-	92	57.293	MGP_PahariEiJ_G0024580	Ptcd1	87	59.048	Mus_pahari
ENSFALG00000013803	-	87	58.917	MGP_SPRETEiJ_G0029012	Ptcd1	87	59.516	Mus_spretus
ENSFALG00000013803	-	93	58.041	ENSMPUG00000016518	-	93	58.504	Mustela_putorius_furo
ENSFALG00000013803	-	97	57.123	ENSMLUG00000010994	-	90	56.643	Myotis_lucifugus
ENSFALG00000013803	-	87	45.972	ENSNBRG00000010079	ptcd1	84	47.145	Neolamprologus_brichardi
ENSFALG00000013803	-	77	61.290	ENSNLEG00000011060	-	91	61.290	Nomascus_leucogenys
ENSFALG00000013803	-	91	58.006	ENSMEUG00000006930	-	85	60.000	Notamacropus_eugenii
ENSFALG00000013803	-	81	56.532	ENSOPRG00000013647	-	84	55.955	Ochotona_princeps
ENSFALG00000013803	-	87	45.253	ENSONIG00000003168	ptcd1	99	45.095	Oreochromis_niloticus
ENSFALG00000013803	-	90	53.172	ENSOANG00000007728	-	88	51.489	Ornithorhynchus_anatinus
ENSFALG00000013803	-	93	56.909	ENSOCUG00000010584	-	91	56.677	Oryctolagus_cuniculus
ENSFALG00000013803	-	93	46.381	ENSORLG00000009275	ptcd1	94	46.211	Oryzias_latipes
ENSFALG00000013803	-	93	46.154	ENSORLG00020000988	ptcd1	94	46.280	Oryzias_latipes_hni
ENSFALG00000013803	-	93	46.006	ENSORLG00015010557	ptcd1	94	45.833	Oryzias_latipes_hsok
ENSFALG00000013803	-	82	48.311	ENSOMEG00000020627	ptcd1	84	47.885	Oryzias_melastigma
ENSFALG00000013803	-	86	59.019	ENSOGAG00000010877	-	87	58.665	Otolemur_garnettii
ENSFALG00000013803	-	94	54.265	ENSOARG00000018676	-	87	56.825	Ovis_aries
ENSFALG00000013803	-	92	59.226	ENSPPAG00000036024	-	93	58.112	Pan_paniscus
ENSFALG00000013803	-	91	59.172	ENSPPRG00000003478	-	88	61.129	Panthera_pardus
ENSFALG00000013803	-	92	59.375	ENSPTRG00000019452	-	93	58.260	Pan_troglodytes
ENSFALG00000013803	-	92	58.657	ENSPANG00000016730	-	93	57.375	Papio_anubis
ENSFALG00000013803	-	88	51.956	ENSPKIG00000014215	ptcd1	89	51.981	Paramormyrops_kingsleyae
ENSFALG00000013803	-	84	67.928	ENSPSIG00000011184	-	99	67.928	Pelodiscus_sinensis
ENSFALG00000013803	-	74	42.322	ENSPMAG00000009667	ptcd1	100	42.322	Petromyzon_marinus
ENSFALG00000013803	-	88	59.876	ENSPCIG00000024778	-	85	59.558	Phascolarctos_cinereus
ENSFALG00000013803	-	91	44.411	ENSPFOG00000004458	ptcd1	89	44.294	Poecilia_formosa
ENSFALG00000013803	-	91	44.042	ENSPLAG00000011051	ptcd1	89	43.628	Poecilia_latipinna
ENSFALG00000013803	-	91	44.713	ENSPMEG00000020547	ptcd1	89	44.294	Poecilia_mexicana
ENSFALG00000013803	-	89	45.426	ENSPREG00000000059	ptcd1	88	43.884	Poecilia_reticulata
ENSFALG00000013803	-	92	58.744	ENSPPYG00000017377	-	98	57.997	Pongo_abelii
ENSFALG00000013803	-	78	63.333	ENSPCAG00000001852	-	84	65.487	Procavia_capensis
ENSFALG00000013803	-	86	60.096	ENSPCOG00000018596	-	86	60.254	Propithecus_coquereli
ENSFALG00000013803	-	60	67.000	ENSPVAG00000007529	-	66	67.000	Pteropus_vampyrus
ENSFALG00000013803	-	87	46.445	ENSPNYG00000019993	ptcd1	83	46.677	Pundamilia_nyererei
ENSFALG00000013803	-	85	51.452	ENSPNAG00000014931	ptcd1	90	50.940	Pygocentrus_nattereri
ENSFALG00000013803	-	84	61.639	ENSRNOG00000000987	Ptcd1	86	61.475	Rattus_norvegicus
ENSFALG00000013803	-	92	58.209	ENSRBIG00000043393	-	93	57.549	Rhinopithecus_bieti
ENSFALG00000013803	-	92	58.358	ENSRROG00000036420	-	93	57.698	Rhinopithecus_roxellana
ENSFALG00000013803	-	93	57.817	ENSSBOG00000024114	-	94	56.196	Saimiri_boliviensis_boliviensis
ENSFALG00000013803	-	88	59.219	ENSSHAG00000011376	-	93	58.852	Sarcophilus_harrisii
ENSFALG00000013803	-	86	55.981	ENSSFOG00015007909	ptcd1	83	56.300	Scleropages_formosus
ENSFALG00000013803	-	85	46.338	ENSSMAG00000000218	ptcd1	93	46.338	Scophthalmus_maximus
ENSFALG00000013803	-	83	47.769	ENSSDUG00000015671	ptcd1	83	47.603	Seriola_dumerili
ENSFALG00000013803	-	87	46.594	ENSSLDG00000014261	ptcd1	83	46.952	Seriola_lalandi_dorsalis
ENSFALG00000013803	-	99	62.050	ENSSPUG00000003540	-	97	62.188	Sphenodon_punctatus
ENSFALG00000013803	-	94	45.194	ENSSPAG00000011049	ptcd1	82	47.152	Stegastes_partitus
ENSFALG00000013803	-	87	60.506	ENSSSCG00000007622	-	99	57.267	Sus_scrofa
ENSFALG00000013803	-	87	89.776	ENSTGUG00000007563	-	99	90.323	Taeniopygia_guttata
ENSFALG00000013803	-	86	45.981	ENSTRUG00000013471	ptcd1	78	47.059	Takifugu_rubripes
ENSFALG00000013803	-	87	46.262	ENSTNIG00000008271	ptcd1	82	47.500	Tetraodon_nigroviridis
ENSFALG00000013803	-	96	57.992	ENSTBEG00000011021	-	95	57.303	Tupaia_belangeri
ENSFALG00000013803	-	88	56.966	ENSTTRG00000003006	-	87	57.614	Tursiops_truncatus
ENSFALG00000013803	-	94	56.466	ENSUAMG00000008049	-	96	55.430	Ursus_americanus
ENSFALG00000013803	-	93	57.642	ENSVVUG00000008836	-	94	57.558	Vulpes_vulpes
ENSFALG00000013803	-	86	55.414	ENSXETG00000009891	ptcd1	87	55.466	Xenopus_tropicalis
ENSFALG00000013803	-	92	44.578	ENSXMAG00000015540	ptcd1	89	44.796	Xiphophorus_maculatus