EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFALG00000013882 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: scaffold attachment factor B1
Gene Type: protein_coding
Species: Ficedula_albicollis
Status: putative
Strand: Plus strand
Length: 23594 bases
Position: chrJH603288.1:1600472-1624065
Accession: 101815887
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFALP00000014486	RRM_5	PF13893.6	7.8e-07	1	1
ENSFALP00000014486	RRM_1	PF00076.22	2.9e-13	1	1
ENSFALP00000014486	SAP	PF02037.27	7.1e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFALT00000014547	-	4795	-	ENSFALP00000014486	998 (aa)	XP_005060103	U3KHI2

Gene Model

Click here to download ENSFALG00000013882's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFALG00000013882's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFALG00000013882	-	83	73.750	ENSFALG00000013881	-	99	74.205

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFALG00000013882	-	89	64.856	ENSG00000160633	SAFB	100	65.591	Homo_sapiens
ENSFALG00000013882	-	83	46.806	ENSAPOG00000022508	safb	64	44.279	Acanthochromis_polyacanthus
ENSFALG00000013882	-	63	62.794	ENSAMEG00000012254	SAFB	100	64.795	Ailuropoda_melanoleuca
ENSFALG00000013882	-	87	43.996	ENSACIG00000006247	safb	98	43.522	Amphilophus_citrinellus
ENSFALG00000013882	-	87	45.219	ENSAOCG00000006308	safb	98	43.883	Amphiprion_ocellaris
ENSFALG00000013882	-	83	46.636	ENSAPEG00000023342	safb	64	43.709	Amphiprion_percula
ENSFALG00000013882	-	87	44.978	ENSATEG00000004998	safb	64	43.648	Anabas_testudineus
ENSFALG00000013882	-	86	91.512	ENSAPLG00000005780	-	100	91.512	Anas_platyrhynchos
ENSFALG00000013882	-	82	74.880	ENSAPLG00000006355	-	100	75.000	Anas_platyrhynchos
ENSFALG00000013882	-	89	64.856	ENSANAG00000028821	SAFB	100	65.591	Aotus_nancymaae
ENSFALG00000013882	-	87	45.778	ENSACLG00000001926	safb	63	43.771	Astatotilapia_calliptera
ENSFALG00000013882	-	89	45.645	ENSAMXG00000018154	safb	63	44.370	Astyanax_mexicanus
ENSFALG00000013882	-	89	64.397	ENSBTAG00000007875	SAFB	100	63.784	Bos_taurus
ENSFALG00000013882	-	75	66.372	ENSCJAG00000017081	SAFB	99	70.275	Callithrix_jacchus
ENSFALG00000013882	-	89	64.778	ENSCAFG00000018803	SAFB	87	66.129	Canis_familiaris
ENSFALG00000013882	-	89	64.667	ENSCAFG00020018943	SAFB	100	66.129	Canis_lupus_dingo
ENSFALG00000013882	-	89	63.951	ENSCHIG00000007262	SAFB	100	63.351	Capra_hircus
ENSFALG00000013882	-	92	61.094	ENSCPOG00000026322	SAFB	100	61.740	Cavia_porcellus
ENSFALG00000013882	-	89	64.784	ENSCCAG00000020193	SAFB	100	64.876	Cebus_capucinus
ENSFALG00000013882	-	89	64.745	ENSCATG00000029994	SAFB	100	65.484	Cercocebus_atys
ENSFALG00000013882	-	92	64.127	ENSCLAG00000007734	SAFB	100	63.713	Chinchilla_lanigera
ENSFALG00000013882	-	89	64.745	ENSCSAG00000009949	SAFB	100	65.484	Chlorocebus_sabaeus
ENSFALG00000013882	-	75	56.785	ENSCHOG00000003208	SAFB	93	58.607	Choloepus_hoffmanni
ENSFALG00000013882	-	84	68.876	ENSCPBG00000010936	-	100	71.429	Chrysemys_picta_bellii
ENSFALG00000013882	-	84	84.816	ENSCPBG00000010928	-	100	84.816	Chrysemys_picta_bellii
ENSFALG00000013882	-	79	65.049	ENSCANG00000004774	-	99	66.341	Colobus_angolensis_palliatus
ENSFALG00000013882	-	89	61.376	ENSCANG00000019754	-	99	61.613	Colobus_angolensis_palliatus
ENSFALG00000013882	-	89	61.189	ENSCGRG00001002254	Safb	100	61.870	Cricetulus_griseus_chok1gshd
ENSFALG00000013882	-	83	58.730	ENSCGRG00000011529	Safb	96	59.343	Cricetulus_griseus_crigri
ENSFALG00000013882	-	87	42.548	ENSCSEG00000019870	safb	66	39.967	Cynoglossus_semilaevis
ENSFALG00000013882	-	87	41.808	ENSCVAG00000002226	safb	64	39.358	Cyprinodon_variegatus
ENSFALG00000013882	-	85	45.829	ENSDARG00000020467	safb	73	54.000	Danio_rerio
ENSFALG00000013882	-	89	63.929	ENSDNOG00000015746	SAFB	95	64.955	Dasypus_novemcinctus
ENSFALG00000013882	-	59	60.522	ENSDORG00000016200	Safb	100	57.339	Dipodomys_ordii
ENSFALG00000013882	-	73	56.643	ENSETEG00000018679	SAFB	80	59.722	Echinops_telfairi
ENSFALG00000013882	-	89	63.385	ENSEASG00005023019	SAFB	100	64.385	Equus_asinus_asinus
ENSFALG00000013882	-	89	63.778	ENSECAG00000018659	SAFB	89	64.731	Equus_caballus
ENSFALG00000013882	-	87	45.264	ENSELUG00000022327	safb	66	44.702	Esox_lucius
ENSFALG00000013882	-	89	65.000	ENSFCAG00000011835	SAFB	100	65.806	Felis_catus
ENSFALG00000013882	-	82	62.814	ENSFDAG00000020306	SAFB	99	62.814	Fukomys_damarensis
ENSFALG00000013882	-	87	42.088	ENSGMOG00000014280	safb	63	42.070	Gadus_morhua
ENSFALG00000013882	-	92	91.485	ENSGALG00000013365	-	100	91.485	Gallus_gallus
ENSFALG00000013882	-	92	72.642	ENSGALG00000001948	-	100	73.368	Gallus_gallus
ENSFALG00000013882	-	87	41.522	ENSGAFG00000016162	safb	65	39.286	Gambusia_affinis
ENSFALG00000013882	-	88	44.802	ENSGACG00000011385	safb	65	43.137	Gasterosteus_aculeatus
ENSFALG00000013882	-	66	78.765	ENSGAGG00000017702	-	98	78.867	Gopherus_agassizii
ENSFALG00000013882	-	88	72.186	ENSGAGG00000008424	-	100	73.564	Gopherus_agassizii
ENSFALG00000013882	-	89	64.967	ENSGGOG00000015109	SAFB	100	65.699	Gorilla_gorilla
ENSFALG00000013882	-	87	43.001	ENSHBUG00000009218	safb	67	42.282	Haplochromis_burtoni
ENSFALG00000013882	-	92	63.521	ENSHGLG00000015883	SAFB	100	64.165	Heterocephalus_glaber_female
ENSFALG00000013882	-	84	40.185	ENSHCOG00000001705	safb	99	37.259	Hippocampus_comes
ENSFALG00000013882	-	91	47.204	ENSIPUG00000024869	safb2	65	46.538	Ictalurus_punctatus
ENSFALG00000013882	-	85	62.870	ENSSTOG00000002783	SAFB	100	63.823	Ictidomys_tridecemlineatus
ENSFALG00000013882	-	92	62.185	ENSJJAG00000009021	Safb	100	62.854	Jaculus_jaculus
ENSFALG00000013882	-	83	46.458	ENSKMAG00000022308	safb	64	43.615	Kryptolebias_marmoratus
ENSFALG00000013882	-	87	46.278	ENSLBEG00000006015	safb	63	45.559	Labrus_bergylta
ENSFALG00000013882	-	58	52.152	ENSLACG00000018090	SAFB	99	54.412	Latimeria_chalumnae
ENSFALG00000013882	-	89	49.200	ENSLOCG00000003613	safb	99	46.568	Lepisosteus_oculatus
ENSFALG00000013882	-	91	63.832	ENSLAFG00000003840	SAFB	100	65.484	Loxodonta_africana
ENSFALG00000013882	-	89	64.673	ENSMFAG00000003885	SAFB	100	64.769	Macaca_fascicularis
ENSFALG00000013882	-	89	64.745	ENSMMUG00000017970	SAFB	100	65.484	Macaca_mulatta
ENSFALG00000013882	-	89	62.652	ENSMNEG00000035637	SAFB	100	62.299	Macaca_nemestrina
ENSFALG00000013882	-	89	61.742	ENSMLEG00000038637	SAFB	88	62.500	Mandrillus_leucophaeus
ENSFALG00000013882	-	89	44.468	ENSMAMG00000003357	safb	60	41.546	Mastacembelus_armatus
ENSFALG00000013882	-	87	45.778	ENSMZEG00005009120	safb	65	43.781	Maylandia_zebra
ENSFALG00000013882	-	82	67.784	ENSMGAG00000001051	-	99	69.185	Meleagris_gallopavo
ENSFALG00000013882	-	89	88.952	ENSMGAG00000001101	-	100	88.952	Meleagris_gallopavo
ENSFALG00000013882	-	92	62.863	ENSMICG00000008739	-	100	64.086	Microcebus_murinus
ENSFALG00000013882	-	78	57.868	ENSMICG00000046795	-	98	63.918	Microcebus_murinus
ENSFALG00000013882	-	89	60.954	ENSMOCG00000014040	Safb	100	61.660	Microtus_ochrogaster
ENSFALG00000013882	-	92	65.675	ENSMODG00000001236	SAFB	100	66.631	Monodelphis_domestica
ENSFALG00000013882	-	87	45.186	ENSMALG00000020330	safb	68	43.069	Monopterus_albus
ENSFALG00000013882	-	92	60.883	MGP_CAROLIEiJ_G0021780	Safb	100	61.595	Mus_caroli
ENSFALG00000013882	-	92	60.358	ENSMUSG00000071054	Safb	100	62.120	Mus_musculus
ENSFALG00000013882	-	89	61.946	MGP_PahariEiJ_G0020769	Safb	100	61.635	Mus_pahari
ENSFALG00000013882	-	92	64.155	ENSMPUG00000006123	SAFB	94	65.699	Mustela_putorius_furo
ENSFALG00000013882	-	89	66.519	ENSMLUG00000001081	SAFB	100	65.843	Myotis_lucifugus
ENSFALG00000013882	-	92	59.197	ENSNGAG00000019882	Safb	100	60.860	Nannospalax_galili
ENSFALG00000013882	-	85	65.429	ENSNLEG00000013551	SAFB	100	65.247	Nomascus_leucogenys
ENSFALG00000013882	-	81	59.854	ENSOPRG00000011561	-	100	60.949	Ochotona_princeps
ENSFALG00000013882	-	92	58.571	ENSODEG00000014838	SAFB	100	63.358	Octodon_degus
ENSFALG00000013882	-	87	45.796	ENSONIG00000002318	safb	65	44.054	Oreochromis_niloticus
ENSFALG00000013882	-	83	57.449	ENSOCUG00000014628	SAFB	63	59.013	Oryctolagus_cuniculus
ENSFALG00000013882	-	83	45.444	ENSORLG00000016989	safb	65	43.284	Oryzias_latipes
ENSFALG00000013882	-	87	42.824	ENSORLG00020000404	safb	66	41.472	Oryzias_latipes_hni
ENSFALG00000013882	-	87	45.190	ENSORLG00015010733	safb	65	43.449	Oryzias_latipes_hsok
ENSFALG00000013882	-	87	44.505	ENSOMEG00000009066	safb	65	43.709	Oryzias_melastigma
ENSFALG00000013882	-	62	61.798	ENSOGAG00000027769	SAFB	100	60.043	Otolemur_garnettii
ENSFALG00000013882	-	72	59.639	ENSOARG00000007856	-	100	58.149	Ovis_aries
ENSFALG00000013882	-	89	61.384	ENSOARG00000007662	-	100	59.067	Ovis_aries
ENSFALG00000013882	-	89	64.895	ENSPPAG00000035129	SAFB	100	64.984	Pan_paniscus
ENSFALG00000013882	-	89	65.000	ENSPPRG00000017197	SAFB	100	65.806	Panthera_pardus
ENSFALG00000013882	-	89	64.895	ENSPTRG00000010335	SAFB	100	64.984	Pan_troglodytes
ENSFALG00000013882	-	89	64.563	ENSPANG00000007770	SAFB	100	64.769	Papio_anubis
ENSFALG00000013882	-	88	47.564	ENSPKIG00000009902	safb	68	47.531	Paramormyrops_kingsleyae
ENSFALG00000013882	-	92	82.166	ENSPSIG00000009367	-	100	81.847	Pelodiscus_sinensis
ENSFALG00000013882	-	92	71.882	ENSPSIG00000011679	-	100	74.548	Pelodiscus_sinensis
ENSFALG00000013882	-	89	61.413	ENSPEMG00000020428	Safb	100	62.000	Peromyscus_maniculatus_bairdii
ENSFALG00000013882	-	54	68.508	ENSPCIG00000009504	-	99	71.257	Phascolarctos_cinereus
ENSFALG00000013882	-	82	44.458	ENSPFOG00000007745	safb	72	41.569	Poecilia_formosa
ENSFALG00000013882	-	87	42.586	ENSPLAG00000001614	safb	66	40.635	Poecilia_latipinna
ENSFALG00000013882	-	87	43.449	ENSPREG00000012496	safb	65	40.970	Poecilia_reticulata
ENSFALG00000013882	-	89	64.745	ENSPPYG00000009428	SAFB	100	65.484	Pongo_abelii
ENSFALG00000013882	-	92	60.814	ENSPCAG00000006475	SAFB	100	61.390	Procavia_capensis
ENSFALG00000013882	-	92	60.000	ENSPCOG00000014090	SAFB	100	59.828	Propithecus_coquereli
ENSFALG00000013882	-	89	60.266	ENSPVAG00000004913	SAFB	99	59.591	Pteropus_vampyrus
ENSFALG00000013882	-	89	46.318	ENSPNAG00000021838	safb	99	44.587	Pygocentrus_nattereri
ENSFALG00000013882	-	61	57.632	ENSRNOG00000050543	Safb	100	61.426	Rattus_norvegicus
ENSFALG00000013882	-	89	59.598	ENSRBIG00000042509	SAFB	100	59.722	Rhinopithecus_bieti
ENSFALG00000013882	-	89	64.784	ENSRROG00000029278	SAFB	100	64.876	Rhinopithecus_roxellana
ENSFALG00000013882	-	89	64.856	ENSSBOG00000026291	SAFB	100	65.591	Saimiri_boliviensis_boliviensis
ENSFALG00000013882	-	87	48.927	ENSSFOG00015008156	safb	65	47.967	Scleropages_formosus
ENSFALG00000013882	-	87	45.151	ENSSMAG00000009316	safb	64	44.444	Scophthalmus_maximus
ENSFALG00000013882	-	87	43.688	ENSSDUG00000009652	safb	68	42.339	Seriola_dumerili
ENSFALG00000013882	-	87	44.816	ENSSLDG00000001670	safb	64	43.115	Seriola_lalandi_dorsalis
ENSFALG00000013882	-	55	60.862	ENSSARG00000010475	SAFB	100	61.921	Sorex_araneus
ENSFALG00000013882	-	75	67.254	ENSSPUG00000009820	-	98	68.892	Sphenodon_punctatus
ENSFALG00000013882	-	88	43.219	ENSSPAG00000015682	safb	98	41.639	Stegastes_partitus
ENSFALG00000013882	-	92	63.326	ENSSSCG00000013522	SAFB	99	66.158	Sus_scrofa
ENSFALG00000013882	-	88	94.915	ENSTGUG00000000502	-	100	94.915	Taeniopygia_guttata
ENSFALG00000013882	-	86	77.740	ENSTGUG00000000489	-	100	78.196	Taeniopygia_guttata
ENSFALG00000013882	-	83	44.111	ENSTRUG00000003567	safb	98	40.729	Takifugu_rubripes
ENSFALG00000013882	-	81	44.855	ENSTNIG00000015470	safb	100	43.643	Tetraodon_nigroviridis
ENSFALG00000013882	-	82	86.111	ENSTTRG00000013588	SAFB	92	67.692	Tursiops_truncatus
ENSFALG00000013882	-	70	63.904	ENSUAMG00000024543	SAFB	90	66.480	Ursus_americanus
ENSFALG00000013882	-	73	61.628	ENSUMAG00000009734	SAFB	96	62.945	Ursus_maritimus
ENSFALG00000013882	-	65	69.912	ENSVPAG00000012043	SAFB	77	70.501	Vicugna_pacos
ENSFALG00000013882	-	89	64.778	ENSVVUG00000013720	SAFB	87	66.129	Vulpes_vulpes
ENSFALG00000013882	-	61	49.918	ENSXETG00000008755	safb	99	52.602	Xenopus_tropicalis
ENSFALG00000013882	-	60	48.804	ENSXMAG00000003458	safb	64	42.667	Xiphophorus_maculatus