EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSFCAG00000000678 (Gene tree)
Gene ID: 101098241
Gene Symbol: -
Alias: MGC39488|POP101|SRM160
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Felis_catus
Status: putative
Strand: Plus strand
Length: 30486 bases
Position: chrC1:18453703-18484188
Accession: 101098241
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFCAP00000000629	PWI	PF01480.17	7.4e-30	1	1
ENSFCAP00000037048	PWI	PF01480.17	7.4e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFCAT00000042289	-	2742	XM_019836411	ENSFCAP00000037048	913 (aa)	XP_019691970	A0A2I2UWZ2
ENSFCAT00000000678	-	2715	-	ENSFCAP00000000629	904 (aa)	-	M3VV78

Gene Model

Click here to download ENSFCAG00000000678's gene model file

Pathways

Pathway ID	Pathway Name	Source
fca03013	RNA transport	KEGG
fca03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSFCAG00000000678's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFCAG00000000678	-	100	98.451	ENSG00000133226	SRRM1	100	100.000	Homo_sapiens
ENSFCAG00000000678	-	100	99.343	ENSAMEG00000010075	SRRM1	100	99.343	Ailuropoda_melanoleuca
ENSFCAG00000000678	-	60	64.983	ENSAPLG00000002066	SRRM1	59	76.250	Anas_platyrhynchos
ENSFCAG00000000678	-	100	98.009	ENSANAG00000035606	SRRM1	100	98.009	Aotus_nancymaae
ENSFCAG00000000678	-	100	98.119	ENSBTAG00000013772	SRRM1	100	98.119	Bos_taurus
ENSFCAG00000000678	-	100	97.700	ENSCJAG00000020822	SRRM1	100	97.700	Callithrix_jacchus
ENSFCAG00000000678	-	100	99.336	ENSCAFG00020020948	SRRM1	100	99.336	Canis_lupus_dingo
ENSFCAG00000000678	-	88	89.950	ENSCAFG00020000003	-	98	89.950	Canis_lupus_dingo
ENSFCAG00000000678	-	100	96.725	ENSCHIG00000014656	SRRM1	100	96.725	Capra_hircus
ENSFCAG00000000678	-	100	98.230	ENSTSYG00000006782	SRRM1	100	98.230	Carlito_syrichta
ENSFCAG00000000678	-	99	94.537	ENSCAPG00000011473	SRRM1	100	94.537	Cavia_aperea
ENSFCAG00000000678	-	100	95.575	ENSCPOG00000015594	SRRM1	100	95.575	Cavia_porcellus
ENSFCAG00000000678	-	100	97.898	ENSCCAG00000029474	SRRM1	100	97.898	Cebus_capucinus
ENSFCAG00000000678	-	100	98.119	ENSCATG00000031303	SRRM1	100	98.119	Cercocebus_atys
ENSFCAG00000000678	-	100	96.350	ENSCLAG00000014592	SRRM1	100	96.350	Chinchilla_lanigera
ENSFCAG00000000678	-	74	97.778	ENSCHOG00000000027	SRRM1	73	99.155	Choloepus_hoffmanni
ENSFCAG00000000678	-	100	98.119	ENSCANG00000028271	SRRM1	100	98.119	Colobus_angolensis_palliatus
ENSFCAG00000000678	-	96	93.665	ENSDNOG00000049141	SRRM1	98	93.665	Dasypus_novemcinctus
ENSFCAG00000000678	-	100	97.059	ENSEASG00005004270	SRRM1	100	97.059	Equus_asinus_asinus
ENSFCAG00000000678	-	100	97.677	ENSECAG00000026981	SRRM1	100	97.677	Equus_caballus
ENSFCAG00000000678	-	100	97.124	ENSFDAG00000009903	SRRM1	100	97.124	Fukomys_damarensis
ENSFCAG00000000678	-	100	98.341	ENSGGOG00000005209	SRRM1	100	98.341	Gorilla_gorilla
ENSFCAG00000000678	-	100	97.235	ENSHGLG00000017105	SRRM1	100	97.235	Heterocephalus_glaber_female
ENSFCAG00000000678	-	99	96.778	ENSHGLG00100016772	SRRM1	99	96.778	Heterocephalus_glaber_male
ENSFCAG00000000678	-	100	98.119	ENSSTOG00000014640	SRRM1	100	98.119	Ictidomys_tridecemlineatus
ENSFCAG00000000678	-	100	94.804	ENSLAFG00000013830	SRRM1	100	94.804	Loxodonta_africana
ENSFCAG00000000678	-	86	78.333	ENSMFAG00000038841	-	61	79.276	Macaca_fascicularis
ENSFCAG00000000678	-	100	98.119	ENSMFAG00000025726	SRRM1	100	98.119	Macaca_fascicularis
ENSFCAG00000000678	-	100	98.009	ENSMMUG00000006645	SRRM1	100	98.009	Macaca_mulatta
ENSFCAG00000000678	-	55	78.672	ENSMMUG00000039269	-	59	68.352	Macaca_mulatta
ENSFCAG00000000678	-	100	98.119	ENSMNEG00000039415	SRRM1	100	98.119	Macaca_nemestrina
ENSFCAG00000000678	-	59	69.776	ENSMLEG00000032221	-	58	74.798	Mandrillus_leucophaeus
ENSFCAG00000000678	-	55	98.403	ENSMLEG00000038030	-	100	91.895	Mandrillus_leucophaeus
ENSFCAG00000000678	-	100	98.009	ENSMICG00000006553	SRRM1	100	98.009	Microcebus_murinus
ENSFCAG00000000678	-	59	97.166	MGP_CAROLIEiJ_G0026636	Srrm1	100	85.965	Mus_caroli
ENSFCAG00000000678	-	59	97.166	ENSMUSG00000028809	Srrm1	100	85.965	Mus_musculus
ENSFCAG00000000678	-	59	97.571	MGP_PahariEiJ_G0028969	Srrm1	100	85.965	Mus_pahari
ENSFCAG00000000678	-	59	97.166	MGP_SPRETEiJ_G0027616	Srrm1	100	85.965	Mus_spretus
ENSFCAG00000000678	-	100	98.451	ENSNLEG00000008966	SRRM1	100	98.451	Nomascus_leucogenys
ENSFCAG00000000678	-	60	90.123	ENSMEUG00000014704	SRRM1	59	89.815	Notamacropus_eugenii
ENSFCAG00000000678	-	100	96.834	ENSOCUG00000008438	SRRM1	100	96.834	Oryctolagus_cuniculus
ENSFCAG00000000678	-	100	96.732	ENSOGAG00000010210	SRRM1	100	96.732	Otolemur_garnettii
ENSFCAG00000000678	-	92	97.406	ENSOARG00000006453	SRRM1	99	97.406	Ovis_aries
ENSFCAG00000000678	-	100	98.341	ENSPPAG00000043918	SRRM1	100	98.341	Pan_paniscus
ENSFCAG00000000678	-	100	100.000	ENSPPRG00000002509	SRRM1	100	100.000	Panthera_pardus
ENSFCAG00000000678	-	100	94.426	ENSPTIG00000008778	-	100	94.426	Panthera_tigris_altaica
ENSFCAG00000000678	-	100	98.451	ENSPTRG00000000349	SRRM1	100	98.451	Pan_troglodytes
ENSFCAG00000000678	-	100	97.473	ENSPANG00000010194	SRRM1	100	97.473	Papio_anubis
ENSFCAG00000000678	-	55	78.226	ENSPANG00000035568	-	59	77.218	Papio_anubis
ENSFCAG00000000678	-	100	98.031	ENSPPYG00000001716	SRRM1	100	98.031	Pongo_abelii
ENSFCAG00000000678	-	52	100.000	ENSPCAG00000015138	SRRM1	52	100.000	Procavia_capensis
ENSFCAG00000000678	-	100	98.031	ENSPCOG00000021311	SRRM1	100	98.031	Propithecus_coquereli
ENSFCAG00000000678	-	100	98.467	ENSPVAG00000005836	SRRM1	100	98.467	Pteropus_vampyrus
ENSFCAG00000000678	-	99	92.489	ENSRBIG00000035461	SRRM1	99	92.489	Rhinopithecus_bieti
ENSFCAG00000000678	-	100	98.119	ENSRROG00000035151	SRRM1	100	98.119	Rhinopithecus_roxellana
ENSFCAG00000000678	-	100	96.714	ENSSBOG00000019884	SRRM1	99	100.000	Saimiri_boliviensis_boliviensis
ENSFCAG00000000678	-	61	95.410	ENSSARG00000013718	SRRM1	60	95.410	Sorex_araneus
ENSFCAG00000000678	-	60	71.870	ENSSPUG00000015890	SRRM1	57	82.963	Sphenodon_punctatus
ENSFCAG00000000678	-	99	98.024	ENSSSCG00000032947	SRRM1	100	98.417	Sus_scrofa
ENSFCAG00000000678	-	100	97.371	ENSTBEG00000000100	SRRM1	100	97.371	Tupaia_belangeri
ENSFCAG00000000678	-	99	97.682	ENSTTRG00000009365	SRRM1	100	97.682	Tursiops_truncatus
ENSFCAG00000000678	-	88	99.624	ENSUMAG00000013121	SRRM1	95	99.624	Ursus_maritimus
ENSFCAG00000000678	-	96	96.237	ENSVPAG00000007698	SRRM1	100	96.237	Vicugna_pacos
ENSFCAG00000000678	-	99	96.313	ENSVVUG00000026966	SRRM1	97	96.313	Vulpes_vulpes