EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFCAG00000002250 (Gene tree)
Gene ID: 101100012
Gene Symbol: -
Alias: -
Full Name: serine and arginine rich splicing factor 1
Gene Type: protein_coding
Species: Felis_catus
Status: putative
Strand: Plus strand
Length: 3787 bases
Position: chrE1:30826289-30830075
Accession: 101100012
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFCAP00000049184	RRM_1	PF00076.22	4.1e-34	1	2
ENSFCAP00000049184	RRM_1	PF00076.22	4.1e-34	2	2
ENSFCAP00000002075	RRM_1	PF00076.22	1.7e-33	1	2
ENSFCAP00000002075	RRM_1	PF00076.22	1.7e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFCAT00000002250	-	2418	XM_019817632	ENSFCAP00000002075	253 (aa)	XP_019673191	M3VY56
ENSFCAT00000059858	-	606	-	ENSFCAP00000049184	201 (aa)	-	UPI0002C59C8D

Gene Model

Click here to download ENSFCAG00000002250's gene model file

Pathways

Pathway ID	Pathway Name	Source
fca03040	Spliceosome	KEGG
fca04657	IL-17 signaling pathway	KEGG
fca05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSFCAG00000002250's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFCAG00000002250	-	92	70.270	ENSFCAG00000011011	SRSF9	82	69.271
ENSFCAG00000002250	-	82	43.429	ENSFCAG00000032814	SRSF6	58	41.148
ENSFCAG00000002250	-	80	46.988	ENSFCAG00000008848	SRSF5	86	45.968

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFCAG00000002250	-	100	100.000	ENSG00000136450	SRSF1	100	100.000	Homo_sapiens
ENSFCAG00000002250	-	92	90.217	ENSAPOG00000008542	-	100	86.220	Acanthochromis_polyacanthus
ENSFCAG00000002250	-	90	91.160	ENSAPOG00000002748	-	98	84.362	Acanthochromis_polyacanthus
ENSFCAG00000002250	-	97	97.154	ENSAMEG00000002635	SRSF1	99	97.154	Ailuropoda_melanoleuca
ENSFCAG00000002250	-	90	90.055	ENSACIG00000008091	srsf1a	98	78.926	Amphilophus_citrinellus
ENSFCAG00000002250	-	92	89.474	ENSAOCG00000000337	-	100	86.508	Amphiprion_ocellaris
ENSFCAG00000002250	-	90	91.713	ENSAOCG00000010671	-	98	85.185	Amphiprion_ocellaris
ENSFCAG00000002250	-	92	89.474	ENSAPEG00000023352	-	99	86.561	Amphiprion_percula
ENSFCAG00000002250	-	90	91.713	ENSAPEG00000009915	-	98	85.185	Amphiprion_percula
ENSFCAG00000002250	-	92	88.587	ENSATEG00000021567	-	100	84.959	Anabas_testudineus
ENSFCAG00000002250	-	90	91.713	ENSATEG00000022403	-	98	84.898	Anabas_testudineus
ENSFCAG00000002250	-	97	98.374	ENSACAG00000005542	-	99	98.374	Anolis_carolinensis
ENSFCAG00000002250	-	100	100.000	ENSANAG00000020583	-	100	100.000	Aotus_nancymaae
ENSFCAG00000002250	-	92	71.196	ENSANAG00000025417	-	99	76.016	Aotus_nancymaae
ENSFCAG00000002250	-	92	91.632	ENSAMXG00000035996	srsf1a	98	93.145	Astyanax_mexicanus
ENSFCAG00000002250	-	60	76.761	ENSAMXG00000024373	-	94	77.778	Astyanax_mexicanus
ENSFCAG00000002250	-	100	100.000	ENSBTAG00000014766	SRSF1	100	100.000	Bos_taurus
ENSFCAG00000002250	-	92	91.351	ENSCJAG00000008111	-	88	91.371	Callithrix_jacchus
ENSFCAG00000002250	-	100	100.000	ENSCJAG00000041713	-	100	100.000	Callithrix_jacchus
ENSFCAG00000002250	-	100	100.000	ENSCAFG00000017430	SRSF1	100	100.000	Canis_familiaris
ENSFCAG00000002250	-	100	100.000	ENSCAFG00020025632	-	100	100.000	Canis_lupus_dingo
ENSFCAG00000002250	-	97	100.000	ENSCHIG00000010787	SRSF1	99	100.000	Capra_hircus
ENSFCAG00000002250	-	100	100.000	ENSTSYG00000013899	-	100	100.000	Carlito_syrichta
ENSFCAG00000002250	-	100	100.000	ENSCPOG00000032681	-	100	100.000	Cavia_porcellus
ENSFCAG00000002250	-	100	100.000	ENSCCAG00000029484	-	100	100.000	Cebus_capucinus
ENSFCAG00000002250	-	100	100.000	ENSCATG00000042294	-	100	100.000	Cercocebus_atys
ENSFCAG00000002250	-	100	100.000	ENSCLAG00000014707	-	100	100.000	Chinchilla_lanigera
ENSFCAG00000002250	-	100	99.209	ENSCSAG00000005642	-	100	99.209	Chlorocebus_sabaeus
ENSFCAG00000002250	-	97	100.000	ENSCHOG00000001899	SRSF1	99	100.000	Choloepus_hoffmanni
ENSFCAG00000002250	-	100	98.814	ENSCPBG00000009851	-	100	98.814	Chrysemys_picta_bellii
ENSFCAG00000002250	-	100	100.000	ENSCANG00000029726	-	100	100.000	Colobus_angolensis_palliatus
ENSFCAG00000002250	-	100	100.000	ENSCGRG00001000670	Srsf1	100	100.000	Cricetulus_griseus_chok1gshd
ENSFCAG00000002250	-	100	100.000	ENSCGRG00000005590	Srsf1	100	100.000	Cricetulus_griseus_crigri
ENSFCAG00000002250	-	90	89.674	ENSCSEG00000014272	-	98	84.553	Cynoglossus_semilaevis
ENSFCAG00000002250	-	92	83.500	ENSCSEG00000009973	-	100	80.303	Cynoglossus_semilaevis
ENSFCAG00000002250	-	90	91.713	ENSCVAG00000018617	-	98	85.185	Cyprinodon_variegatus
ENSFCAG00000002250	-	97	84.694	ENSCVAG00000005458	-	98	86.179	Cyprinodon_variegatus
ENSFCAG00000002250	-	91	89.583	ENSDARG00000057691	srsf1a	98	92.095	Danio_rerio
ENSFCAG00000002250	-	96	96.708	ENSDARG00000017843	srsf1b	98	96.708	Danio_rerio
ENSFCAG00000002250	-	100	100.000	ENSDNOG00000011737	-	100	100.000	Dasypus_novemcinctus
ENSFCAG00000002250	-	100	100.000	ENSDORG00000015082	Srsf1	100	100.000	Dipodomys_ordii
ENSFCAG00000002250	-	94	96.809	ENSETEG00000005349	-	63	98.913	Echinops_telfairi
ENSFCAG00000002250	-	100	100.000	ENSEASG00005002922	-	100	100.000	Equus_asinus_asinus
ENSFCAG00000002250	-	97	100.000	ENSECAG00000016654	SRSF1	99	100.000	Equus_caballus
ENSFCAG00000002250	-	92	100.000	ENSEEUG00000009255	-	63	100.000	Erinaceus_europaeus
ENSFCAG00000002250	-	91	91.209	ENSELUG00000021646	srsf1a	98	79.839	Esox_lucius
ENSFCAG00000002250	-	100	82.213	ENSFALG00000005062	-	100	82.213	Ficedula_albicollis
ENSFCAG00000002250	-	100	100.000	ENSFDAG00000010646	-	100	100.000	Fukomys_damarensis
ENSFCAG00000002250	-	90	91.713	ENSFHEG00000003174	srsf1a	98	85.185	Fundulus_heteroclitus
ENSFCAG00000002250	-	90	88.333	ENSGMOG00000014787	-	99	82.645	Gadus_morhua
ENSFCAG00000002250	-	97	98.780	ENSGALG00000005525	SRSF1	99	98.780	Gallus_gallus
ENSFCAG00000002250	-	92	86.413	ENSGACG00000020621	srsf1b	100	74.390	Gasterosteus_aculeatus
ENSFCAG00000002250	-	100	98.814	ENSGAGG00000022965	-	100	98.814	Gopherus_agassizii
ENSFCAG00000002250	-	100	100.000	ENSGGOG00000004386	SRSF1	100	100.000	Gorilla_gorilla
ENSFCAG00000002250	-	90	90.556	ENSHBUG00000016788	srsf1a	98	84.774	Haplochromis_burtoni
ENSFCAG00000002250	-	85	99.070	ENSHGLG00000000669	-	100	99.070	Heterocephalus_glaber_female
ENSFCAG00000002250	-	85	99.070	ENSHGLG00000000600	-	100	99.070	Heterocephalus_glaber_female
ENSFCAG00000002250	-	100	100.000	ENSHGLG00100016906	-	100	100.000	Heterocephalus_glaber_male
ENSFCAG00000002250	-	90	88.108	ENSHCOG00000018918	srsf1a	97	81.928	Hippocampus_comes
ENSFCAG00000002250	-	97	95.935	ENSIPUG00000008750	srsf1b	99	95.935	Ictalurus_punctatus
ENSFCAG00000002250	-	92	91.213	ENSIPUG00000017039	srsf1a	98	93.145	Ictalurus_punctatus
ENSFCAG00000002250	-	100	100.000	ENSSTOG00000000243	-	100	100.000	Ictidomys_tridecemlineatus
ENSFCAG00000002250	-	63	92.126	ENSJJAG00000014464	-	95	88.189	Jaculus_jaculus
ENSFCAG00000002250	-	100	100.000	ENSJJAG00000000102	-	100	100.000	Jaculus_jaculus
ENSFCAG00000002250	-	90	90.055	ENSKMAG00000019232	srsf1a	98	83.951	Kryptolebias_marmoratus
ENSFCAG00000002250	-	92	82.888	ENSLBEG00000015294	-	98	83.133	Labrus_bergylta
ENSFCAG00000002250	-	90	90.608	ENSLBEG00000020864	-	98	84.362	Labrus_bergylta
ENSFCAG00000002250	-	90	91.713	ENSLACG00000014160	srsf1a	92	93.878	Latimeria_chalumnae
ENSFCAG00000002250	-	97	97.154	ENSLOCG00000005994	srsf1a	99	97.154	Lepisosteus_oculatus
ENSFCAG00000002250	-	97	100.000	ENSLAFG00000025743	SRSF1	99	100.000	Loxodonta_africana
ENSFCAG00000002250	-	100	100.000	ENSMFAG00000040003	-	100	100.000	Macaca_fascicularis
ENSFCAG00000002250	-	100	100.000	ENSMMUG00000004725	SRSF1	100	100.000	Macaca_mulatta
ENSFCAG00000002250	-	100	97.233	ENSMMUG00000003260	-	100	97.233	Macaca_mulatta
ENSFCAG00000002250	-	100	96.838	ENSMNEG00000015983	-	100	96.838	Macaca_nemestrina
ENSFCAG00000002250	-	100	100.000	ENSMNEG00000027680	-	100	100.000	Macaca_nemestrina
ENSFCAG00000002250	-	100	94.466	ENSMLEG00000015243	-	100	94.466	Mandrillus_leucophaeus
ENSFCAG00000002250	-	97	100.000	ENSMLEG00000040509	SRSF1	99	100.000	Mandrillus_leucophaeus
ENSFCAG00000002250	-	92	93.478	ENSMAMG00000019691	-	100	88.211	Mastacembelus_armatus
ENSFCAG00000002250	-	92	88.587	ENSMAMG00000019687	-	100	85.081	Mastacembelus_armatus
ENSFCAG00000002250	-	90	91.713	ENSMAMG00000018454	-	98	85.185	Mastacembelus_armatus
ENSFCAG00000002250	-	100	100.000	ENSMAUG00000021845	Srsf1	100	100.000	Mesocricetus_auratus
ENSFCAG00000002250	-	100	100.000	ENSMICG00000013639	-	100	100.000	Microcebus_murinus
ENSFCAG00000002250	-	100	100.000	ENSMOCG00000001996	Srsf1	100	100.000	Microtus_ochrogaster
ENSFCAG00000002250	-	90	90.556	ENSMMOG00000014354	srsf1a	98	78.099	Mola_mola
ENSFCAG00000002250	-	92	98.919	ENSMODG00000014781	-	63	98.919	Monodelphis_domestica
ENSFCAG00000002250	-	92	76.630	ENSMALG00000007763	-	79	79.695	Monopterus_albus
ENSFCAG00000002250	-	90	91.160	ENSMALG00000017129	-	75	88.601	Monopterus_albus
ENSFCAG00000002250	-	100	100.000	MGP_CAROLIEiJ_G0016943	Srsf1	100	100.000	Mus_caroli
ENSFCAG00000002250	-	100	100.000	ENSMUSG00000018379	Srsf1	100	100.000	Mus_musculus
ENSFCAG00000002250	-	100	100.000	MGP_PahariEiJ_G0018074	Srsf1	100	100.000	Mus_pahari
ENSFCAG00000002250	-	100	100.000	MGP_SPRETEiJ_G0017790	Srsf1	100	100.000	Mus_spretus
ENSFCAG00000002250	-	97	100.000	ENSMPUG00000015369	SRSF1	99	100.000	Mustela_putorius_furo
ENSFCAG00000002250	-	97	100.000	ENSMLUG00000011040	SRSF1	99	100.000	Myotis_lucifugus
ENSFCAG00000002250	-	92	87.500	ENSMLUG00000023995	-	100	90.323	Myotis_lucifugus
ENSFCAG00000002250	-	97	100.000	ENSNGAG00000011395	Srsf1	99	100.000	Nannospalax_galili
ENSFCAG00000002250	-	97	79.675	ENSNBRG00000008041	srsf1b	80	82.741	Neolamprologus_brichardi
ENSFCAG00000002250	-	100	100.000	ENSNLEG00000008088	-	100	100.000	Nomascus_leucogenys
ENSFCAG00000002250	-	63	98.425	ENSMEUG00000002783	-	100	98.425	Notamacropus_eugenii
ENSFCAG00000002250	-	72	98.907	ENSOPRG00000001234	-	100	98.907	Ochotona_princeps
ENSFCAG00000002250	-	100	99.209	ENSODEG00000011481	-	100	99.209	Octodon_degus
ENSFCAG00000002250	-	90	90.055	ENSONIG00000013160	-	98	84.774	Oreochromis_niloticus
ENSFCAG00000002250	-	94	90.717	ENSONIG00000004860	-	81	90.863	Oreochromis_niloticus
ENSFCAG00000002250	-	96	70.565	ENSOCUG00000010894	-	77	71.795	Oryctolagus_cuniculus
ENSFCAG00000002250	-	90	91.713	ENSORLG00000004580	srsf1a	98	85.185	Oryzias_latipes
ENSFCAG00000002250	-	90	91.713	ENSORLG00020009456	srsf1a	98	85.185	Oryzias_latipes_hni
ENSFCAG00000002250	-	90	92.222	ENSORLG00015014384	srsf1a	98	84.774	Oryzias_latipes_hsok
ENSFCAG00000002250	-	81	90.798	ENSOMEG00000004106	srsf1a	92	82.743	Oryzias_melastigma
ENSFCAG00000002250	-	97	100.000	ENSOGAG00000025950	-	99	100.000	Otolemur_garnettii
ENSFCAG00000002250	-	97	95.122	ENSOARG00000008323	SRSF1	99	95.122	Ovis_aries
ENSFCAG00000002250	-	100	100.000	ENSPPAG00000043403	-	100	100.000	Pan_paniscus
ENSFCAG00000002250	-	100	100.000	ENSPPRG00000004238	-	100	100.000	Panthera_pardus
ENSFCAG00000002250	-	100	100.000	ENSPTRG00000049077	SRSF1	100	100.000	Pan_troglodytes
ENSFCAG00000002250	-	100	100.000	ENSPANG00000022305	-	100	100.000	Papio_anubis
ENSFCAG00000002250	-	100	77.075	ENSPANG00000030275	-	100	76.680	Papio_anubis
ENSFCAG00000002250	-	96	95.062	ENSPKIG00000007204	srsf1a	98	95.062	Paramormyrops_kingsleyae
ENSFCAG00000002250	-	97	95.935	ENSPKIG00000012857	srsf1b	99	95.935	Paramormyrops_kingsleyae
ENSFCAG00000002250	-	92	90.323	ENSPSIG00000009000	-	100	92.000	Pelodiscus_sinensis
ENSFCAG00000002250	-	93	86.979	ENSPMGG00000013112	-	99	85.654	Periophthalmus_magnuspinnatus
ENSFCAG00000002250	-	94	84.937	ENSPMGG00000005467	-	99	85.470	Periophthalmus_magnuspinnatus
ENSFCAG00000002250	-	100	100.000	ENSPEMG00000021416	Srsf1	100	100.000	Peromyscus_maniculatus_bairdii
ENSFCAG00000002250	-	97	99.190	ENSPCIG00000006076	-	99	99.190	Phascolarctos_cinereus
ENSFCAG00000002250	-	91	89.617	ENSPFOG00000018325	-	86	85.714	Poecilia_formosa
ENSFCAG00000002250	-	91	89.617	ENSPLAG00000008416	srsf1b	98	85.714	Poecilia_latipinna
ENSFCAG00000002250	-	61	89.431	ENSPMEG00000020607	-	98	87.805	Poecilia_mexicana
ENSFCAG00000002250	-	61	89.431	ENSPMEG00000014312	-	98	87.805	Poecilia_mexicana
ENSFCAG00000002250	-	91	89.617	ENSPMEG00000002388	-	98	85.714	Poecilia_mexicana
ENSFCAG00000002250	-	95	88.421	ENSPREG00000009667	srsf1a	98	85.185	Poecilia_reticulata
ENSFCAG00000002250	-	100	100.000	ENSPPYG00000008240	SRSF1	100	100.000	Pongo_abelii
ENSFCAG00000002250	-	97	100.000	ENSPCAG00000005199	SRSF1	99	100.000	Procavia_capensis
ENSFCAG00000002250	-	92	75.401	ENSPCOG00000025736	-	95	76.531	Propithecus_coquereli
ENSFCAG00000002250	-	100	100.000	ENSPCOG00000023654	-	100	100.000	Propithecus_coquereli
ENSFCAG00000002250	-	73	100.000	ENSPVAG00000000519	-	74	100.000	Pteropus_vampyrus
ENSFCAG00000002250	-	92	93.162	ENSPNAG00000022241	srsf1a	98	90.947	Pygocentrus_nattereri
ENSFCAG00000002250	-	97	94.309	ENSPNAG00000014601	srsf1b	99	94.309	Pygocentrus_nattereri
ENSFCAG00000002250	-	97	100.000	ENSRNOG00000050323	Srsf1	99	100.000	Rattus_norvegicus
ENSFCAG00000002250	-	100	100.000	ENSRBIG00000034445	-	100	100.000	Rhinopithecus_bieti
ENSFCAG00000002250	-	100	100.000	ENSRROG00000041506	-	100	100.000	Rhinopithecus_roxellana
ENSFCAG00000002250	-	100	100.000	ENSSBOG00000025377	-	100	100.000	Saimiri_boliviensis_boliviensis
ENSFCAG00000002250	-	97	99.190	ENSSHAG00000002552	-	99	99.190	Sarcophilus_harrisii
ENSFCAG00000002250	-	97	96.327	ENSSFOG00015004800	srsf1a	98	96.327	Scleropages_formosus
ENSFCAG00000002250	-	92	87.083	ENSSMAG00000009719	-	100	86.275	Scophthalmus_maximus
ENSFCAG00000002250	-	90	90.055	ENSSMAG00000007018	-	98	83.128	Scophthalmus_maximus
ENSFCAG00000002250	-	92	82.353	ENSSDUG00000003929	-	99	77.510	Seriola_dumerili
ENSFCAG00000002250	-	90	90.608	ENSSDUG00000011303	-	98	84.362	Seriola_dumerili
ENSFCAG00000002250	-	92	83.243	ENSSLDG00000016868	-	99	82.661	Seriola_lalandi_dorsalis
ENSFCAG00000002250	-	90	90.608	ENSSLDG00000010543	-	98	84.362	Seriola_lalandi_dorsalis
ENSFCAG00000002250	-	92	84.946	ENSSLDG00000016895	-	99	76.113	Seriola_lalandi_dorsalis
ENSFCAG00000002250	-	92	100.000	ENSSARG00000010949	-	63	100.000	Sorex_araneus
ENSFCAG00000002250	-	100	98.814	ENSSPUG00000000804	-	100	98.814	Sphenodon_punctatus
ENSFCAG00000002250	-	92	87.755	ENSSPAG00000014152	-	99	84.556	Stegastes_partitus
ENSFCAG00000002250	-	90	90.608	ENSSPAG00000022562	-	98	85.597	Stegastes_partitus
ENSFCAG00000002250	-	100	100.000	ENSSSCG00000017626	-	100	100.000	Sus_scrofa
ENSFCAG00000002250	-	73	97.283	ENSTGUG00000008416	-	100	97.283	Taeniopygia_guttata
ENSFCAG00000002250	-	90	91.160	ENSTRUG00000003691	srsf1a	98	84.362	Takifugu_rubripes
ENSFCAG00000002250	-	90	91.160	ENSTNIG00000016223	srsf1a	98	84.362	Tetraodon_nigroviridis
ENSFCAG00000002250	-	94	96.277	ENSTBEG00000015378	-	63	98.370	Tupaia_belangeri
ENSFCAG00000002250	-	72	98.907	ENSTTRG00000007310	SRSF1	100	98.907	Tursiops_truncatus
ENSFCAG00000002250	-	97	100.000	ENSUAMG00000009858	SRSF1	99	100.000	Ursus_americanus
ENSFCAG00000002250	-	100	100.000	ENSUMAG00000000455	-	100	100.000	Ursus_maritimus
ENSFCAG00000002250	-	97	99.593	ENSVPAG00000010094	SRSF1	99	99.593	Vicugna_pacos
ENSFCAG00000002250	-	100	100.000	ENSVVUG00000011882	-	100	100.000	Vulpes_vulpes
ENSFCAG00000002250	-	97	95.935	ENSXETG00000008954	srsf1	99	91.321	Xenopus_tropicalis
ENSFCAG00000002250	-	90	91.713	ENSXMAG00000011766	srsf1a	98	85.185	Xiphophorus_maculatus