EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFCAG00000004998 (Gene tree)
Gene ID: 101099028
Gene Symbol: PABPC5
Alias: PABP5
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Felis_catus
Status: putative
Strand: Plus strand
Length: 1149 bases
Position: chrX:76057630-76058778
Accession: 101099028
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFCAP00000004622	RRM_5	PF13893.6	1.7e-11	1	2
ENSFCAP00000004622	RRM_5	PF13893.6	1.7e-11	2	2
ENSFCAP00000004622	RRM_1	PF00076.22	2.7e-79	1	4
ENSFCAP00000004622	RRM_1	PF00076.22	2.7e-79	2	4
ENSFCAP00000004622	RRM_1	PF00076.22	2.7e-79	3	4
ENSFCAP00000004622	RRM_1	PF00076.22	2.7e-79	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFCAT00000004994	PABPC5-201	1149	XM_023249244	ENSFCAP00000004622	382 (aa)	XP_023105012	M3W398

Gene Model

Click here to download ENSFCAG00000004998's gene model file

Pathways

Pathway ID	Pathway Name	Source
fca03013	RNA transport	KEGG
fca03015	mRNA surveillance pathway	KEGG
fca03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSFCAG00000004998's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFCAG00000004998	PABPC5	96	60.606	ENSFCAG00000011692	PABPC1L	62	60.674
ENSFCAG00000004998	PABPC5	96	30.508	ENSFCAG00000013401	TRNAU1AP	62	30.061
ENSFCAG00000004998	PABPC5	60	36.709	ENSFCAG00000007908	CELF3	56	35.616
ENSFCAG00000004998	PABPC5	96	67.769	ENSFCAG00000015254	-	58	67.978
ENSFCAG00000004998	PABPC5	93	60.204	ENSFCAG00000039701	-	98	59.896
ENSFCAG00000004998	PABPC5	70	36.709	ENSFCAG00000016249	-	50	36.709
ENSFCAG00000004998	PABPC5	94	35.802	ENSFCAG00000011976	ELAVL2	86	35.802
ENSFCAG00000004998	PABPC5	96	63.736	ENSFCAG00000028270	PABPC4L	98	63.764
ENSFCAG00000004998	PABPC5	97	64.420	ENSFCAG00000001874	PABPC1	59	65.449

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFCAG00000004998	PABPC5	99	97.113	ENSG00000174740	PABPC5	99	97.113	Homo_sapiens
ENSFCAG00000004998	PABPC5	99	99.213	ENSAMEG00000020114	PABPC5	100	99.213	Ailuropoda_melanoleuca
ENSFCAG00000004998	PABPC5	99	97.113	ENSANAG00000005063	PABPC5	99	97.113	Aotus_nancymaae
ENSFCAG00000004998	PABPC5	100	96.597	ENSBTAG00000019942	PABPC5	100	96.597	Bos_taurus
ENSFCAG00000004998	PABPC5	99	96.588	ENSCJAG00000003665	PABPC5	99	96.588	Callithrix_jacchus
ENSFCAG00000004998	PABPC5	100	99.215	ENSCAFG00000017452	PABPC5	100	99.215	Canis_familiaris
ENSFCAG00000004998	PABPC5	100	96.597	ENSCHIG00000019004	PABPC5	100	96.597	Capra_hircus
ENSFCAG00000004998	PABPC5	100	96.597	ENSTSYG00000036351	PABPC5	100	96.597	Carlito_syrichta
ENSFCAG00000004998	PABPC5	99	90.110	ENSCAPG00000010714	PABPC5	100	90.110	Cavia_aperea
ENSFCAG00000004998	PABPC5	100	93.717	ENSCPOG00000002555	PABPC5	100	93.717	Cavia_porcellus
ENSFCAG00000004998	PABPC5	99	97.113	ENSCCAG00000032154	PABPC5	99	97.113	Cebus_capucinus
ENSFCAG00000004998	PABPC5	99	97.113	ENSCATG00000043083	PABPC5	99	97.113	Cercocebus_atys
ENSFCAG00000004998	PABPC5	100	95.026	ENSCLAG00000000647	PABPC5	100	95.026	Chinchilla_lanigera
ENSFCAG00000004998	PABPC5	99	97.113	ENSCSAG00000000065	PABPC5	99	97.113	Chlorocebus_sabaeus
ENSFCAG00000004998	PABPC5	99	97.113	ENSCANG00000011473	PABPC5	99	97.113	Colobus_angolensis_palliatus
ENSFCAG00000004998	PABPC5	100	93.455	ENSCGRG00000018699	Pabpc5	100	93.455	Cricetulus_griseus_crigri
ENSFCAG00000004998	PABPC5	100	78.329	ENSETEG00000011832	PABPC5	100	78.329	Echinops_telfairi
ENSFCAG00000004998	PABPC5	100	97.906	ENSEASG00005014396	PABPC5	100	97.906	Equus_asinus_asinus
ENSFCAG00000004998	PABPC5	100	97.906	ENSECAG00000003452	PABPC5	100	97.906	Equus_caballus
ENSFCAG00000004998	PABPC5	100	96.073	ENSFDAG00000000126	PABPC5	100	96.073	Fukomys_damarensis
ENSFCAG00000004998	PABPC5	99	97.113	ENSGGOG00000007622	PABPC5	99	97.113	Gorilla_gorilla
ENSFCAG00000004998	PABPC5	95	95.872	ENSJJAG00000011960	Pabpc5	100	95.872	Jaculus_jaculus
ENSFCAG00000004998	PABPC5	99	97.113	ENSMFAG00000024561	PABPC5	99	97.113	Macaca_fascicularis
ENSFCAG00000004998	PABPC5	99	97.113	ENSMMUG00000011562	PABPC5	99	97.113	Macaca_mulatta
ENSFCAG00000004998	PABPC5	99	97.113	ENSMNEG00000037604	PABPC5	99	97.113	Macaca_nemestrina
ENSFCAG00000004998	PABPC5	99	97.113	ENSMLEG00000028318	PABPC5	99	97.113	Mandrillus_leucophaeus
ENSFCAG00000004998	PABPC5	100	96.073	ENSMICG00000041706	PABPC5	100	96.073	Microcebus_murinus
ENSFCAG00000004998	PABPC5	100	95.288	ENSMOCG00000001554	Pabpc5	100	95.288	Microtus_ochrogaster
ENSFCAG00000004998	PABPC5	99	93.158	MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.158	Mus_caroli
ENSFCAG00000004998	PABPC5	99	93.684	ENSMUSG00000034732	Pabpc5	99	93.684	Mus_musculus
ENSFCAG00000004998	PABPC5	100	93.979	MGP_PahariEiJ_G0031908	Pabpc5	100	93.979	Mus_pahari
ENSFCAG00000004998	PABPC5	99	93.684	MGP_SPRETEiJ_G0034533	Pabpc5	99	93.684	Mus_spretus
ENSFCAG00000004998	PABPC5	100	98.691	ENSMPUG00000018465	PABPC5	100	98.691	Mustela_putorius_furo
ENSFCAG00000004998	PABPC5	100	96.335	ENSMLUG00000008244	PABPC5	100	96.335	Myotis_lucifugus
ENSFCAG00000004998	PABPC5	95	94.954	ENSNGAG00000004371	Pabpc5	100	94.954	Nannospalax_galili
ENSFCAG00000004998	PABPC5	99	97.113	ENSNLEG00000035086	PABPC5	99	97.113	Nomascus_leucogenys
ENSFCAG00000004998	PABPC5	98	97.727	ENSOPRG00000000856	PABPC5	99	97.727	Ochotona_princeps
ENSFCAG00000004998	PABPC5	100	96.859	ENSOCUG00000010919	PABPC5	100	96.859	Oryctolagus_cuniculus
ENSFCAG00000004998	PABPC5	100	96.335	ENSOGAG00000006882	PABPC5	100	96.335	Otolemur_garnettii
ENSFCAG00000004998	PABPC5	100	96.859	ENSOARG00000010260	PABPC5	100	96.859	Ovis_aries
ENSFCAG00000004998	PABPC5	99	96.850	ENSPPAG00000007378	PABPC5	99	96.850	Pan_paniscus
ENSFCAG00000004998	PABPC5	100	100.000	ENSPPRG00000010742	PABPC5	100	100.000	Panthera_pardus
ENSFCAG00000004998	PABPC5	100	100.000	ENSPTIG00000001480	PABPC5	100	100.000	Panthera_tigris_altaica
ENSFCAG00000004998	PABPC5	99	97.113	ENSPTRG00000022078	PABPC5	99	97.113	Pan_troglodytes
ENSFCAG00000004998	PABPC5	99	97.113	ENSPANG00000018282	PABPC5	99	97.113	Papio_anubis
ENSFCAG00000004998	PABPC5	100	94.241	ENSPEMG00000000171	Pabpc5	100	94.241	Peromyscus_maniculatus_bairdii
ENSFCAG00000004998	PABPC5	99	97.113	ENSPPYG00000020526	PABPC5	99	97.113	Pongo_abelii
ENSFCAG00000004998	PABPC5	99	96.727	ENSPCAG00000015577	PABPC5	100	96.727	Procavia_capensis
ENSFCAG00000004998	PABPC5	100	96.859	ENSPCOG00000000676	PABPC5	100	96.859	Propithecus_coquereli
ENSFCAG00000004998	PABPC5	100	97.644	ENSPVAG00000006465	PABPC5	100	97.644	Pteropus_vampyrus
ENSFCAG00000004998	PABPC5	100	93.979	ENSRNOG00000003354	Pabpc5	100	93.979	Rattus_norvegicus
ENSFCAG00000004998	PABPC5	99	97.113	ENSRBIG00000011760	PABPC5	99	97.113	Rhinopithecus_bieti
ENSFCAG00000004998	PABPC5	99	97.113	ENSRROG00000036708	PABPC5	99	97.113	Rhinopithecus_roxellana
ENSFCAG00000004998	PABPC5	99	97.113	ENSSBOG00000008658	PABPC5	99	97.113	Saimiri_boliviensis_boliviensis
ENSFCAG00000004998	PABPC5	100	94.503	ENSSARG00000014012	PABPC5	100	94.503	Sorex_araneus
ENSFCAG00000004998	PABPC5	100	97.382	ENSSSCG00000040194	PABPC5	100	97.382	Sus_scrofa
ENSFCAG00000004998	PABPC5	100	97.644	ENSTBEG00000016482	PABPC5	100	97.644	Tupaia_belangeri
ENSFCAG00000004998	PABPC5	100	99.215	ENSUAMG00000013627	PABPC5	100	99.215	Ursus_americanus
ENSFCAG00000004998	PABPC5	100	98.953	ENSUMAG00000023934	PABPC5	100	98.953	Ursus_maritimus
ENSFCAG00000004998	PABPC5	100	97.382	ENSVPAG00000001063	PABPC5	100	97.382	Vicugna_pacos
ENSFCAG00000004998	PABPC5	100	99.476	ENSVVUG00000013172	PABPC5	100	99.476	Vulpes_vulpes