EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFCAG00000009350 (Gene tree)
Gene ID: -
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Felis_catus
Status: putative
Strand: Plus strand
Length: 8366 bases
Position: chrB4:43178711-43187076
Accession: 604
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFCAP00000008672	APOBEC_N	PF08210.11	3.6e-28	1	1
ENSFCAP00000008672	APOBEC_C	PF05240.14	1.1e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFCAT00000009352	APOBEC1-201	1335	-	ENSFCAP00000008672	236 (aa)	-	M3WB96

Gene Model

Click here to download ENSFCAG00000009350's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFCAG00000009350's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFCAG00000009350	APOBEC1	58	33.577	ENSFCAG00000005251	APOBEC3Z3	70	33.577

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFCAG00000009350	APOBEC1	100	81.356	ENSG00000111701	APOBEC1	100	81.356	Homo_sapiens
ENSFCAG00000009350	APOBEC1	99	85.408	ENSAMEG00000007098	APOBEC1	99	85.408	Ailuropoda_melanoleuca
ENSFCAG00000009350	APOBEC1	78	40.541	ENSACAG00000028578	-	98	40.541	Anolis_carolinensis
ENSFCAG00000009350	APOBEC1	100	79.661	ENSANAG00000027743	APOBEC1	95	79.661	Aotus_nancymaae
ENSFCAG00000009350	APOBEC1	100	74.576	ENSBTAG00000014683	APOBEC1	100	74.576	Bos_taurus
ENSFCAG00000009350	APOBEC1	94	80.543	ENSCJAG00000005398	APOBEC1	100	80.543	Callithrix_jacchus
ENSFCAG00000009350	APOBEC1	100	84.746	ENSCAFG00000013901	APOBEC1	100	84.746	Canis_familiaris
ENSFCAG00000009350	APOBEC1	96	82.743	ENSCAFG00020003511	APOBEC1	95	82.743	Canis_lupus_dingo
ENSFCAG00000009350	APOBEC1	98	74.892	ENSCHIG00000011898	APOBEC1	96	74.892	Capra_hircus
ENSFCAG00000009350	APOBEC1	59	83.453	ENSTSYG00000029141	APOBEC1	99	83.453	Carlito_syrichta
ENSFCAG00000009350	APOBEC1	91	69.159	ENSCAPG00000015882	-	99	69.159	Cavia_aperea
ENSFCAG00000009350	APOBEC1	99	67.660	ENSCPOG00000033068	APOBEC1	99	67.660	Cavia_porcellus
ENSFCAG00000009350	APOBEC1	100	79.237	ENSCCAG00000022258	APOBEC1	100	79.237	Cebus_capucinus
ENSFCAG00000009350	APOBEC1	100	82.627	ENSCATG00000021613	APOBEC1	95	82.627	Cercocebus_atys
ENSFCAG00000009350	APOBEC1	97	71.179	ENSCLAG00000014645	APOBEC1	99	71.179	Chinchilla_lanigera
ENSFCAG00000009350	APOBEC1	81	83.684	ENSCSAG00000009817	APOBEC1	99	83.684	Chlorocebus_sabaeus
ENSFCAG00000009350	APOBEC1	77	45.455	ENSCPBG00000017398	-	82	45.455	Chrysemys_picta_bellii
ENSFCAG00000009350	APOBEC1	87	44.444	ENSCPBG00000014327	-	77	44.444	Chrysemys_picta_bellii
ENSFCAG00000009350	APOBEC1	83	44.949	ENSCPBG00000014328	-	86	44.949	Chrysemys_picta_bellii
ENSFCAG00000009350	APOBEC1	83	47.959	ENSCPBG00000014329	-	54	47.959	Chrysemys_picta_bellii
ENSFCAG00000009350	APOBEC1	98	40.426	ENSCPBG00000014331	-	94	40.426	Chrysemys_picta_bellii
ENSFCAG00000009350	APOBEC1	78	48.663	ENSCPBG00000014335	-	76	48.663	Chrysemys_picta_bellii
ENSFCAG00000009350	APOBEC1	97	82.609	ENSCANG00000038359	APOBEC1	100	82.609	Colobus_angolensis_palliatus
ENSFCAG00000009350	APOBEC1	97	71.179	ENSCGRG00001011130	Apobec1	100	71.179	Cricetulus_griseus_chok1gshd
ENSFCAG00000009350	APOBEC1	97	71.179	ENSCGRG00000008644	Apobec1	100	71.179	Cricetulus_griseus_crigri
ENSFCAG00000009350	APOBEC1	100	79.661	ENSDNOG00000010926	APOBEC1	100	79.661	Dasypus_novemcinctus
ENSFCAG00000009350	APOBEC1	90	65.421	ENSDORG00000023717	Apobec1	100	65.421	Dipodomys_ordii
ENSFCAG00000009350	APOBEC1	99	77.872	ENSETEG00000004867	APOBEC1	99	77.872	Echinops_telfairi
ENSFCAG00000009350	APOBEC1	99	84.120	ENSEASG00005015951	APOBEC1	98	84.120	Equus_asinus_asinus
ENSFCAG00000009350	APOBEC1	81	84.737	ENSECAG00000017163	APOBEC1	99	84.737	Equus_caballus
ENSFCAG00000009350	APOBEC1	86	55.882	ENSEEUG00000007530	-	97	55.882	Erinaceus_europaeus
ENSFCAG00000009350	APOBEC1	91	68.519	ENSEEUG00000009112	-	96	68.519	Erinaceus_europaeus
ENSFCAG00000009350	APOBEC1	60	48.592	ENSFALG00000007257	-	72	48.592	Ficedula_albicollis
ENSFCAG00000009350	APOBEC1	88	59.903	ENSFDAG00000018470	APOBEC1	99	59.903	Fukomys_damarensis
ENSFCAG00000009350	APOBEC1	72	46.784	ENSGAGG00000006624	-	62	46.784	Gopherus_agassizii
ENSFCAG00000009350	APOBEC1	76	42.077	ENSGAGG00000021745	-	68	42.077	Gopherus_agassizii
ENSFCAG00000009350	APOBEC1	92	48.858	ENSGAGG00000011837	-	90	51.685	Gopherus_agassizii
ENSFCAG00000009350	APOBEC1	72	48.555	ENSGAGG00000004947	-	82	53.906	Gopherus_agassizii
ENSFCAG00000009350	APOBEC1	81	44.041	ENSGAGG00000021744	-	75	44.041	Gopherus_agassizii
ENSFCAG00000009350	APOBEC1	99	64.681	ENSHGLG00000001495	APOBEC1	99	64.681	Heterocephalus_glaber_female
ENSFCAG00000009350	APOBEC1	99	63.404	ENSHGLG00100002187	APOBEC1	99	63.404	Heterocephalus_glaber_male
ENSFCAG00000009350	APOBEC1	91	64.651	ENSSTOG00000021971	APOBEC1	100	82.653	Ictidomys_tridecemlineatus
ENSFCAG00000009350	APOBEC1	97	76.856	ENSJJAG00000022108	Apobec1	100	76.856	Jaculus_jaculus
ENSFCAG00000009350	APOBEC1	94	79.821	ENSLAFG00000030837	APOBEC1	100	79.821	Loxodonta_africana
ENSFCAG00000009350	APOBEC1	100	83.051	ENSMFAG00000000277	APOBEC1	100	83.051	Macaca_fascicularis
ENSFCAG00000009350	APOBEC1	100	82.627	ENSMNEG00000029670	APOBEC1	100	82.627	Macaca_nemestrina
ENSFCAG00000009350	APOBEC1	100	82.627	ENSMLEG00000036301	APOBEC1	100	82.627	Mandrillus_leucophaeus
ENSFCAG00000009350	APOBEC1	92	70.833	ENSMAUG00000022167	Apobec1	97	70.833	Mesocricetus_auratus
ENSFCAG00000009350	APOBEC1	100	82.203	ENSMICG00000043645	APOBEC1	100	82.203	Microcebus_murinus
ENSFCAG00000009350	APOBEC1	100	68.644	ENSMODG00000018004	APOBEC1	100	68.644	Monodelphis_domestica
ENSFCAG00000009350	APOBEC1	97	71.053	ENSMUSG00000040613	Apobec1	99	71.429	Mus_musculus
ENSFCAG00000009350	APOBEC1	97	68.421	MGP_PahariEiJ_G0022580	-	99	68.421	Mus_pahari
ENSFCAG00000009350	APOBEC1	97	71.053	MGP_SPRETEiJ_G0029857	Apobec1	99	71.429	Mus_spretus
ENSFCAG00000009350	APOBEC1	100	87.288	ENSMPUG00000017532	APOBEC1	100	87.288	Mustela_putorius_furo
ENSFCAG00000009350	APOBEC1	97	72.926	ENSNGAG00000022607	Apobec1	100	72.926	Nannospalax_galili
ENSFCAG00000009350	APOBEC1	100	81.780	ENSNLEG00000005342	APOBEC1	100	81.780	Nomascus_leucogenys
ENSFCAG00000009350	APOBEC1	100	67.797	ENSMEUG00000013406	APOBEC1	100	67.797	Notamacropus_eugenii
ENSFCAG00000009350	APOBEC1	77	62.431	ENSOPRG00000009508	-	100	62.431	Ochotona_princeps
ENSFCAG00000009350	APOBEC1	100	73.729	ENSOCUG00000025736	APOBEC1	88	73.729	Oryctolagus_cuniculus
ENSFCAG00000009350	APOBEC1	99	80.258	ENSOGAG00000026415	APOBEC1	99	80.258	Otolemur_garnettii
ENSFCAG00000009350	APOBEC1	100	75.000	ENSOARG00000002072	APOBEC1	99	75.000	Ovis_aries
ENSFCAG00000009350	APOBEC1	99	74.678	ENSPPAG00000027657	APOBEC1	99	74.678	Pan_paniscus
ENSFCAG00000009350	APOBEC1	100	99.576	ENSPPRG00000012182	APOBEC1	100	99.576	Panthera_pardus
ENSFCAG00000009350	APOBEC1	100	99.576	ENSPTIG00000020280	APOBEC1	100	99.576	Panthera_tigris_altaica
ENSFCAG00000009350	APOBEC1	100	81.780	ENSPTRG00000004614	APOBEC1	100	81.780	Pan_troglodytes
ENSFCAG00000009350	APOBEC1	100	82.203	ENSPANG00000021027	APOBEC1	100	82.203	Papio_anubis
ENSFCAG00000009350	APOBEC1	57	49.550	ENSPSIG00000012791	-	75	49.550	Pelodiscus_sinensis
ENSFCAG00000009350	APOBEC1	78	44.324	ENSPSIG00000012568	-	80	44.324	Pelodiscus_sinensis
ENSFCAG00000009350	APOBEC1	97	70.306	ENSPEMG00000023841	Apobec1	100	70.306	Peromyscus_maniculatus_bairdii
ENSFCAG00000009350	APOBEC1	100	72.034	ENSPCIG00000023973	APOBEC1	100	72.034	Phascolarctos_cinereus
ENSFCAG00000009350	APOBEC1	100	79.661	ENSPPYG00000004228	APOBEC1	95	79.661	Pongo_abelii
ENSFCAG00000009350	APOBEC1	79	77.540	ENSPCAG00000008733	APOBEC1	100	77.540	Procavia_capensis
ENSFCAG00000009350	APOBEC1	94	81.982	ENSPCOG00000013957	APOBEC1	98	81.982	Propithecus_coquereli
ENSFCAG00000009350	APOBEC1	100	68.644	ENSPVAG00000010709	APOBEC1	100	68.644	Pteropus_vampyrus
ENSFCAG00000009350	APOBEC1	97	69.298	ENSRNOG00000015411	Apobec1	99	69.298	Rattus_norvegicus
ENSFCAG00000009350	APOBEC1	100	81.780	ENSRBIG00000031161	APOBEC1	100	81.780	Rhinopithecus_bieti
ENSFCAG00000009350	APOBEC1	100	81.780	ENSRROG00000033576	APOBEC1	100	81.780	Rhinopithecus_roxellana
ENSFCAG00000009350	APOBEC1	73	80.925	ENSSBOG00000030587	APOBEC1	98	80.925	Saimiri_boliviensis_boliviensis
ENSFCAG00000009350	APOBEC1	96	70.925	ENSSHAG00000008925	APOBEC1	99	70.925	Sarcophilus_harrisii
ENSFCAG00000009350	APOBEC1	56	72.727	ENSSARG00000011972	-	100	72.727	Sorex_araneus
ENSFCAG00000009350	APOBEC1	73	69.186	ENSSARG00000000032	-	100	69.186	Sorex_araneus
ENSFCAG00000009350	APOBEC1	92	41.333	ENSSPUG00000009044	-	86	41.333	Sphenodon_punctatus
ENSFCAG00000009350	APOBEC1	100	81.356	ENSSSCG00000000668	APOBEC1	100	81.356	Sus_scrofa
ENSFCAG00000009350	APOBEC1	61	50.685	ENSTGUG00000013118	-	100	50.685	Taeniopygia_guttata
ENSFCAG00000009350	APOBEC1	94	75.113	ENSTBEG00000010043	APOBEC1	94	75.113	Tupaia_belangeri
ENSFCAG00000009350	APOBEC1	79	76.471	ENSTTRG00000014015	APOBEC1	100	76.471	Tursiops_truncatus
ENSFCAG00000009350	APOBEC1	99	85.837	ENSUAMG00000011636	APOBEC1	95	85.837	Ursus_americanus
ENSFCAG00000009350	APOBEC1	99	85.837	ENSUMAG00000016552	APOBEC1	95	85.837	Ursus_maritimus
ENSFCAG00000009350	APOBEC1	100	78.814	ENSVPAG00000001343	APOBEC1	100	78.814	Vicugna_pacos
ENSFCAG00000009350	APOBEC1	100	85.593	ENSVVUG00000010522	APOBEC1	100	85.593	Vulpes_vulpes