EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFCAG00000018496 (Gene tree)
Gene ID: 101100451
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Felis_catus
Status: putative
Strand: Minus strand
Length: 71716 bases
Position: chrX:109009095-109080810
Accession: 101100451
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFCAP00000016273	ResIII	PF04851.15	9.6e-13	1	1
ENSFCAP00000043527	ResIII	PF04851.15	9.8e-13	1	1
ENSFCAP00000016273	DEAD	PF00270.29	2.7e-06	1	1
ENSFCAP00000043527	DEAD	PF00270.29	2.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFCAT00000052405	SMARCA1-201	3210	XM_004000877	ENSFCAP00000043527	1069 (aa)	XP_004000926	UPI0002990D78
ENSFCAT00000018281	SMARCA1-202	3174	-	ENSFCAP00000016273	1057 (aa)	-	M3WPP2

Gene Model

Click here to download ENSFCAG00000018496's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFCAG00000018496's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFCAG00000018496	SMARCA1	54	43.509	ENSFCAG00000007777	CHD1L	61	43.585
ENSFCAG00000018496	SMARCA1	51	48.606	ENSFCAG00000005206	HELLS	76	48.606
ENSFCAG00000018496	SMARCA1	93	85.729	ENSFCAG00000004544	SMARCA5	93	85.729

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFCAG00000018496	SMARCA1	100	98.677	ENSG00000102038	SMARCA1	100	98.677	Homo_sapiens
ENSFCAG00000018496	SMARCA1	92	83.709	ENSAPOG00000016035	smarca5	98	84.136	Acanthochromis_polyacanthus
ENSFCAG00000018496	SMARCA1	100	98.037	ENSAMEG00000015218	SMARCA1	100	98.037	Ailuropoda_melanoleuca
ENSFCAG00000018496	SMARCA1	85	84.164	ENSACIG00000016982	smarca5	99	84.263	Amphilophus_citrinellus
ENSFCAG00000018496	SMARCA1	92	83.709	ENSAOCG00000015578	smarca5	95	82.727	Amphiprion_ocellaris
ENSFCAG00000018496	SMARCA1	92	83.709	ENSAPEG00000011117	smarca5	99	84.198	Amphiprion_percula
ENSFCAG00000018496	SMARCA1	93	83.299	ENSATEG00000012894	smarca5	95	82.727	Anabas_testudineus
ENSFCAG00000018496	SMARCA1	93	92.872	ENSAPLG00000013149	SMARCA1	100	92.872	Anas_platyrhynchos
ENSFCAG00000018496	SMARCA1	97	89.622	ENSACAG00000011376	SMARCA1	95	91.409	Anolis_carolinensis
ENSFCAG00000018496	SMARCA1	98	93.256	ENSANAG00000023098	SMARCA1	98	93.449	Aotus_nancymaae
ENSFCAG00000018496	SMARCA1	96	81.256	ENSACLG00000025356	smarca5	95	83.131	Astatotilapia_calliptera
ENSFCAG00000018496	SMARCA1	98	80.911	ENSAMXG00000005709	smarca5	94	84.000	Astyanax_mexicanus
ENSFCAG00000018496	SMARCA1	88	88.280	ENSAMXG00000011227	smarca1	99	89.939	Astyanax_mexicanus
ENSFCAG00000018496	SMARCA1	99	97.923	ENSBTAG00000002292	SMARCA1	99	98.000	Bos_taurus
ENSFCAG00000018496	SMARCA1	93	63.333	WBGene00002169	isw-1	97	63.333	Caenorhabditis_elegans
ENSFCAG00000018496	SMARCA1	100	98.488	ENSCJAG00000002868	SMARCA1	100	98.488	Callithrix_jacchus
ENSFCAG00000018496	SMARCA1	100	89.312	ENSCAFG00000018673	SMARCA1	100	89.498	Canis_familiaris
ENSFCAG00000018496	SMARCA1	100	99.433	ENSCAFG00020001751	SMARCA1	100	99.433	Canis_lupus_dingo
ENSFCAG00000018496	SMARCA1	100	98.021	ENSCHIG00000009837	SMARCA1	100	98.021	Capra_hircus
ENSFCAG00000018496	SMARCA1	95	98.518	ENSTSYG00000004240	SMARCA1	98	97.862	Carlito_syrichta
ENSFCAG00000018496	SMARCA1	100	95.019	ENSCPOG00000013601	SMARCA1	99	95.606	Cavia_porcellus
ENSFCAG00000018496	SMARCA1	100	95.463	ENSCCAG00000030817	SMARCA1	100	95.463	Cebus_capucinus
ENSFCAG00000018496	SMARCA1	100	98.598	ENSCATG00000015921	SMARCA1	100	98.598	Cercocebus_atys
ENSFCAG00000018496	SMARCA1	100	96.692	ENSCLAG00000002171	SMARCA1	100	96.692	Chinchilla_lanigera
ENSFCAG00000018496	SMARCA1	100	98.582	ENSCSAG00000008460	SMARCA1	100	98.582	Chlorocebus_sabaeus
ENSFCAG00000018496	SMARCA1	96	91.194	ENSCPBG00000001146	SMARCA1	95	92.607	Chrysemys_picta_bellii
ENSFCAG00000018496	SMARCA1	93	73.085	ENSCING00000004110	swi/snf	98	73.085	Ciona_intestinalis
ENSFCAG00000018496	SMARCA1	92	73.203	ENSCSAVG00000004620	-	100	74.165	Ciona_savignyi
ENSFCAG00000018496	SMARCA1	100	98.582	ENSCANG00000007183	SMARCA1	100	98.582	Colobus_angolensis_palliatus
ENSFCAG00000018496	SMARCA1	100	94.712	ENSCGRG00001010776	Smarca1	98	96.150	Cricetulus_griseus_chok1gshd
ENSFCAG00000018496	SMARCA1	93	96.061	ENSCGRG00000015301	Smarca1	98	96.158	Cricetulus_griseus_crigri
ENSFCAG00000018496	SMARCA1	92	83.709	ENSCSEG00000000328	smarca5	95	82.929	Cynoglossus_semilaevis
ENSFCAG00000018496	SMARCA1	93	83.096	ENSCVAG00000008668	smarca5	99	83.746	Cyprinodon_variegatus
ENSFCAG00000018496	SMARCA1	94	82.609	ENSDARG00000052348	smarca5	95	82.609	Danio_rerio
ENSFCAG00000018496	SMARCA1	94	84.180	ENSDARG00000012776	smarca1	97	85.178	Danio_rerio
ENSFCAG00000018496	SMARCA1	98	96.329	ENSDNOG00000004315	SMARCA1	99	96.329	Dasypus_novemcinctus
ENSFCAG00000018496	SMARCA1	98	96.132	ENSDORG00000009270	Smarca1	97	96.351	Dipodomys_ordii
ENSFCAG00000018496	SMARCA1	92	73.156	FBgn0011604	Iswi	98	72.414	Drosophila_melanogaster
ENSFCAG00000018496	SMARCA1	77	91.964	ENSETEG00000017426	SMARCA1	85	91.964	Echinops_telfairi
ENSFCAG00000018496	SMARCA1	93	80.797	ENSEBUG00000001239	smarca5	96	80.797	Eptatretus_burgeri
ENSFCAG00000018496	SMARCA1	97	93.269	ENSEASG00005008218	SMARCA1	100	93.737	Equus_asinus_asinus
ENSFCAG00000018496	SMARCA1	100	98.775	ENSECAG00000012106	SMARCA1	100	98.775	Equus_caballus
ENSFCAG00000018496	SMARCA1	75	97.682	ENSEEUG00000014927	SMARCA1	83	97.682	Erinaceus_europaeus
ENSFCAG00000018496	SMARCA1	95	85.728	ENSELUG00000010515	smarca1	99	85.991	Esox_lucius
ENSFCAG00000018496	SMARCA1	86	93.100	ENSFALG00000000209	SMARCA1	98	93.202	Ficedula_albicollis
ENSFCAG00000018496	SMARCA1	93	98.083	ENSFDAG00000009818	SMARCA1	97	98.083	Fukomys_damarensis
ENSFCAG00000018496	SMARCA1	93	83.503	ENSFHEG00000007687	smarca5	94	82.929	Fundulus_heteroclitus
ENSFCAG00000018496	SMARCA1	94	90.726	ENSGALG00000008431	SMARCA1	97	92.528	Gallus_gallus
ENSFCAG00000018496	SMARCA1	93	83.503	ENSGAFG00000017731	smarca5	95	82.929	Gambusia_affinis
ENSFCAG00000018496	SMARCA1	92	93.313	ENSGAGG00000023575	SMARCA1	100	93.313	Gopherus_agassizii
ENSFCAG00000018496	SMARCA1	70	96.000	ENSGGOG00000012841	-	95	96.000	Gorilla_gorilla
ENSFCAG00000018496	SMARCA1	100	96.881	ENSHGLG00000003080	SMARCA1	100	96.881	Heterocephalus_glaber_female
ENSFCAG00000018496	SMARCA1	94	96.603	ENSHGLG00100001102	SMARCA1	100	96.603	Heterocephalus_glaber_male
ENSFCAG00000018496	SMARCA1	92	83.538	ENSHCOG00000005458	smarca5	95	82.828	Hippocampus_comes
ENSFCAG00000018496	SMARCA1	98	79.119	ENSIPUG00000005229	SMARCA5	97	82.657	Ictalurus_punctatus
ENSFCAG00000018496	SMARCA1	95	85.035	ENSIPUG00000016905	Smarca1	99	86.721	Ictalurus_punctatus
ENSFCAG00000018496	SMARCA1	100	98.015	ENSSTOG00000014524	SMARCA1	100	98.015	Ictidomys_tridecemlineatus
ENSFCAG00000018496	SMARCA1	100	95.857	ENSJJAG00000002593	Smarca1	100	95.857	Jaculus_jaculus
ENSFCAG00000018496	SMARCA1	92	83.742	ENSKMAG00000003777	smarca5	95	83.030	Kryptolebias_marmoratus
ENSFCAG00000018496	SMARCA1	88	83.888	ENSLBEG00000013295	SMARCA1	100	84.956	Labrus_bergylta
ENSFCAG00000018496	SMARCA1	94	82.626	ENSLBEG00000018112	smarca5	95	82.626	Labrus_bergylta
ENSFCAG00000018496	SMARCA1	95	89.741	ENSLACG00000016697	SMARCA1	99	89.741	Latimeria_chalumnae
ENSFCAG00000018496	SMARCA1	94	88.655	ENSLOCG00000014591	smarca1	97	88.655	Lepisosteus_oculatus
ENSFCAG00000018496	SMARCA1	95	96.521	ENSLAFG00000000896	SMARCA1	100	96.521	Loxodonta_africana
ENSFCAG00000018496	SMARCA1	100	98.677	ENSMFAG00000002117	SMARCA1	100	98.598	Macaca_fascicularis
ENSFCAG00000018496	SMARCA1	100	98.598	ENSMMUG00000008818	SMARCA1	100	98.598	Macaca_mulatta
ENSFCAG00000018496	SMARCA1	100	98.598	ENSMNEG00000041768	SMARCA1	100	98.598	Macaca_nemestrina
ENSFCAG00000018496	SMARCA1	100	98.582	ENSMLEG00000043198	SMARCA1	100	98.582	Mandrillus_leucophaeus
ENSFCAG00000018496	SMARCA1	93	83.707	ENSMAMG00000014294	smarca5	96	82.600	Mastacembelus_armatus
ENSFCAG00000018496	SMARCA1	96	81.256	ENSMZEG00005009369	smarca5	95	83.131	Maylandia_zebra
ENSFCAG00000018496	SMARCA1	95	90.936	ENSMGAG00000007042	SMARCA1	100	90.936	Meleagris_gallopavo
ENSFCAG00000018496	SMARCA1	98	96.466	ENSMAUG00000008133	Smarca1	99	96.466	Mesocricetus_auratus
ENSFCAG00000018496	SMARCA1	100	98.316	ENSMICG00000015768	SMARCA1	100	98.316	Microcebus_murinus
ENSFCAG00000018496	SMARCA1	100	95.673	ENSMOCG00000009464	Smarca1	100	95.673	Microtus_ochrogaster
ENSFCAG00000018496	SMARCA1	94	81.111	ENSMMOG00000005547	smarca5	99	81.111	Mola_mola
ENSFCAG00000018496	SMARCA1	98	89.632	ENSMODG00000013187	-	99	89.632	Monodelphis_domestica
ENSFCAG00000018496	SMARCA1	92	83.333	ENSMALG00000002081	smarca5	97	82.922	Monopterus_albus
ENSFCAG00000018496	SMARCA1	100	95.951	MGP_CAROLIEiJ_G0033034	Smarca1	100	95.951	Mus_caroli
ENSFCAG00000018496	SMARCA1	100	95.951	ENSMUSG00000031099	Smarca1	100	95.951	Mus_musculus
ENSFCAG00000018496	SMARCA1	100	95.951	MGP_PahariEiJ_G0031579	Smarca1	100	95.951	Mus_pahari
ENSFCAG00000018496	SMARCA1	100	96.045	MGP_SPRETEiJ_G0034192	Smarca1	100	96.045	Mus_spretus
ENSFCAG00000018496	SMARCA1	100	99.252	ENSMPUG00000017423	SMARCA1	95	99.252	Mustela_putorius_furo
ENSFCAG00000018496	SMARCA1	100	95.051	ENSMLUG00000029614	SMARCA1	100	95.051	Myotis_lucifugus
ENSFCAG00000018496	SMARCA1	98	96.944	ENSNGAG00000006492	Smarca1	99	96.944	Nannospalax_galili
ENSFCAG00000018496	SMARCA1	93	83.809	ENSNBRG00000004463	smarca5	99	83.232	Neolamprologus_brichardi
ENSFCAG00000018496	SMARCA1	100	97.944	ENSNLEG00000015179	SMARCA1	100	97.944	Nomascus_leucogenys
ENSFCAG00000018496	SMARCA1	89	81.828	ENSMEUG00000008819	SMARCA1	100	81.828	Notamacropus_eugenii
ENSFCAG00000018496	SMARCA1	98	96.750	ENSODEG00000012163	SMARCA1	99	96.750	Octodon_degus
ENSFCAG00000018496	SMARCA1	96	81.354	ENSONIG00000009993	smarca5	95	83.232	Oreochromis_niloticus
ENSFCAG00000018496	SMARCA1	92	93.621	ENSOANG00000002862	SMARCA1	100	93.621	Ornithorhynchus_anatinus
ENSFCAG00000018496	SMARCA1	100	96.503	ENSOCUG00000001047	SMARCA1	100	96.503	Oryctolagus_cuniculus
ENSFCAG00000018496	SMARCA1	92	83.640	ENSORLG00000021998	smarca5	95	82.929	Oryzias_latipes
ENSFCAG00000018496	SMARCA1	92	83.742	ENSORLG00020017679	smarca5	97	81.990	Oryzias_latipes_hni
ENSFCAG00000018496	SMARCA1	92	83.640	ENSORLG00015017210	smarca5	95	82.828	Oryzias_latipes_hsok
ENSFCAG00000018496	SMARCA1	92	83.640	ENSOMEG00000000086	smarca5	95	82.828	Oryzias_melastigma
ENSFCAG00000018496	SMARCA1	98	98.281	ENSOGAG00000004399	SMARCA1	99	98.281	Otolemur_garnettii
ENSFCAG00000018496	SMARCA1	95	97.631	ENSOARG00000014638	SMARCA1	100	99.082	Ovis_aries
ENSFCAG00000018496	SMARCA1	100	98.677	ENSPPAG00000034647	SMARCA1	100	98.677	Pan_paniscus
ENSFCAG00000018496	SMARCA1	100	99.813	ENSPPRG00000008929	SMARCA1	100	99.813	Panthera_pardus
ENSFCAG00000018496	SMARCA1	95	97.839	ENSPTIG00000000915	SMARCA1	98	97.839	Panthera_tigris_altaica
ENSFCAG00000018496	SMARCA1	100	98.677	ENSPTRG00000049876	SMARCA1	100	98.598	Pan_troglodytes
ENSFCAG00000018496	SMARCA1	100	98.677	ENSPANG00000003871	SMARCA1	100	98.677	Papio_anubis
ENSFCAG00000018496	SMARCA1	89	86.800	ENSPKIG00000013411	smarca1	98	86.618	Paramormyrops_kingsleyae
ENSFCAG00000018496	SMARCA1	95	91.708	ENSPSIG00000010101	SMARCA1	100	93.004	Pelodiscus_sinensis
ENSFCAG00000018496	SMARCA1	98	97.039	ENSPEMG00000017503	Smarca1	99	97.039	Peromyscus_maniculatus_bairdii
ENSFCAG00000018496	SMARCA1	95	91.908	ENSPCIG00000015460	SMARCA1	98	91.908	Phascolarctos_cinereus
ENSFCAG00000018496	SMARCA1	92	83.742	ENSPFOG00000007649	smarca5	95	82.929	Poecilia_formosa
ENSFCAG00000018496	SMARCA1	92	83.742	ENSPLAG00000003363	smarca5	95	82.929	Poecilia_latipinna
ENSFCAG00000018496	SMARCA1	92	83.640	ENSPMEG00000019849	smarca5	95	82.828	Poecilia_mexicana
ENSFCAG00000018496	SMARCA1	92	83.640	ENSPREG00000023250	smarca5	95	82.828	Poecilia_reticulata
ENSFCAG00000018496	SMARCA1	100	94.860	ENSPPYG00000020703	SMARCA1	100	94.860	Pongo_abelii
ENSFCAG00000018496	SMARCA1	77	89.189	ENSPCOG00000020722	SMARCA1	94	93.392	Propithecus_coquereli
ENSFCAG00000018496	SMARCA1	92	98.069	ENSPVAG00000003805	SMARCA1	94	98.069	Pteropus_vampyrus
ENSFCAG00000018496	SMARCA1	56	84.384	ENSPNYG00000012299	smarca5	92	83.200	Pundamilia_nyererei
ENSFCAG00000018496	SMARCA1	100	96.500	ENSRNOG00000003762	Smarca1	100	96.500	Rattus_norvegicus
ENSFCAG00000018496	SMARCA1	100	98.582	ENSRROG00000034167	SMARCA1	100	98.582	Rhinopithecus_roxellana
ENSFCAG00000018496	SMARCA1	96	97.289	ENSSBOG00000020641	SMARCA1	100	98.980	Saimiri_boliviensis_boliviensis
ENSFCAG00000018496	SMARCA1	92	86.434	ENSSHAG00000013518	SMARCA1	99	86.434	Sarcophilus_harrisii
ENSFCAG00000018496	SMARCA1	96	81.201	ENSSFOG00015016794	smarca5	100	83.505	Scleropages_formosus
ENSFCAG00000018496	SMARCA1	98	85.300	ENSSFOG00015009043	smarca1	99	85.300	Scleropages_formosus
ENSFCAG00000018496	SMARCA1	93	82.472	ENSSMAG00000004801	smarca5	95	82.472	Scophthalmus_maximus
ENSFCAG00000018496	SMARCA1	93	83.198	ENSSDUG00000020690	smarca5	97	82.036	Seriola_dumerili
ENSFCAG00000018496	SMARCA1	93	83.198	ENSSLDG00000025190	smarca5	97	82.036	Seriola_lalandi_dorsalis
ENSFCAG00000018496	SMARCA1	85	90.642	ENSSARG00000000842	SMARCA1	92	90.642	Sorex_araneus
ENSFCAG00000018496	SMARCA1	95	90.139	ENSSPUG00000000590	SMARCA1	95	91.922	Sphenodon_punctatus
ENSFCAG00000018496	SMARCA1	93	83.299	ENSSPAG00000002894	smarca5	97	84.136	Stegastes_partitus
ENSFCAG00000018496	SMARCA1	98	98.555	ENSSSCG00000012649	SMARCA1	99	98.555	Sus_scrofa
ENSFCAG00000018496	SMARCA1	93	92.363	ENSTGUG00000003899	-	100	92.363	Taeniopygia_guttata
ENSFCAG00000018496	SMARCA1	93	83.401	ENSTRUG00000014094	smarca5	95	82.828	Takifugu_rubripes
ENSFCAG00000018496	SMARCA1	92	82.684	ENSTNIG00000017717	smarca5	94	81.818	Tetraodon_nigroviridis
ENSFCAG00000018496	SMARCA1	93	91.304	ENSTBEG00000014973	SMARCA1	99	91.304	Tupaia_belangeri
ENSFCAG00000018496	SMARCA1	92	96.033	ENSTTRG00000006168	SMARCA1	99	96.033	Tursiops_truncatus
ENSFCAG00000018496	SMARCA1	100	99.055	ENSUAMG00000020201	SMARCA1	100	99.055	Ursus_americanus
ENSFCAG00000018496	SMARCA1	95	94.592	ENSUMAG00000004073	SMARCA1	97	99.513	Ursus_maritimus
ENSFCAG00000018496	SMARCA1	77	100.000	ENSVPAG00000010492	-	85	100.000	Vicugna_pacos
ENSFCAG00000018496	SMARCA1	95	99.600	ENSVVUG00000008878	SMARCA1	99	99.600	Vulpes_vulpes
ENSFCAG00000018496	SMARCA1	94	89.347	ENSXETG00000001526	smarca1	99	89.347	Xenopus_tropicalis
ENSFCAG00000018496	SMARCA1	93	83.401	ENSXCOG00000011170	smarca5	98	82.828	Xiphophorus_couchianus
ENSFCAG00000018496	SMARCA1	93	83.401	ENSXMAG00000009678	smarca5	97	84.978	Xiphophorus_maculatus