EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFCAG00000027589 (Gene tree)
Gene ID: 101097088
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Felis_catus
Status: putative
Strand: Plus strand
Length: 118108 bases
Position: chrC2:123505621-123623728
Accession: 101097088
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFCAP00000040963	XRN_N	PF03159.18	6.1e-97	1	1
ENSFCAP00000017751	XRN_N	PF03159.18	9.7e-96	1	1
ENSFCAP00000047866	XRN_N	PF03159.18	9.8e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFCAT00000024258	XRN1-202	4914	-	ENSFCAP00000017751	1637 (aa)	-	M3WTR5
ENSFCAT00000056276	XRN1-203	1383	-	ENSFCAP00000040963	460 (aa)	-	UPI000DE7D2A9
ENSFCAT00000059733	XRN1-201	4953	XM_023260504	ENSFCAP00000047866	1650 (aa)	XP_023116272	UPI000DE7CBE7

Gene Model

Click here to download ENSFCAG00000027589's gene model file

Pathways

Pathway ID	Pathway Name	Source
fca03008	Ribosome biogenesis in eukaryotes	KEGG
fca03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSFCAG00000027589's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFCAG00000027589	XRN1	76	42.402	ENSFCAG00000007970	XRN2	71	35.036

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFCAG00000027589	XRN1	100	96.522	ENSG00000114127	XRN1	100	99.394	Homo_sapiens
ENSFCAG00000027589	XRN1	99	80.220	ENSAPOG00000000622	xrn1	98	68.271	Acanthochromis_polyacanthus
ENSFCAG00000027589	XRN1	99	97.143	ENSAMEG00000012538	XRN1	100	89.862	Ailuropoda_melanoleuca
ENSFCAG00000027589	XRN1	99	80.000	ENSACIG00000001057	xrn1	96	67.831	Amphilophus_citrinellus
ENSFCAG00000027589	XRN1	99	80.440	ENSAOCG00000014097	xrn1	95	63.711	Amphiprion_ocellaris
ENSFCAG00000027589	XRN1	99	80.440	ENSAPEG00000006620	xrn1	98	59.367	Amphiprion_percula
ENSFCAG00000027589	XRN1	99	76.149	ENSATEG00000009752	xrn1	96	67.340	Anabas_testudineus
ENSFCAG00000027589	XRN1	93	90.000	ENSAPLG00000004905	XRN1	100	71.851	Anas_platyrhynchos
ENSFCAG00000027589	XRN1	99	87.281	ENSACAG00000004985	XRN1	100	68.880	Anolis_carolinensis
ENSFCAG00000027589	XRN1	99	96.264	ENSANAG00000029013	XRN1	100	89.110	Aotus_nancymaae
ENSFCAG00000027589	XRN1	99	79.130	ENSACLG00000004806	xrn1	96	58.970	Astatotilapia_calliptera
ENSFCAG00000027589	XRN1	91	78.947	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSFCAG00000027589	XRN1	99	96.484	ENSBTAG00000011524	XRN1	100	89.696	Bos_taurus
ENSFCAG00000027589	XRN1	79	64.075	WBGene00012730	xrn-1	80	35.523	Caenorhabditis_elegans
ENSFCAG00000027589	XRN1	99	95.415	ENSCJAG00000001872	XRN1	100	88.909	Callithrix_jacchus
ENSFCAG00000027589	XRN1	99	97.143	ENSCAFG00000007783	XRN1	100	90.984	Canis_familiaris
ENSFCAG00000027589	XRN1	99	97.143	ENSCAFG00020009120	XRN1	99	97.006	Canis_lupus_dingo
ENSFCAG00000027589	XRN1	99	96.923	ENSCHIG00000019192	XRN1	99	87.630	Capra_hircus
ENSFCAG00000027589	XRN1	99	95.604	ENSTSYG00000002705	XRN1	100	89.151	Carlito_syrichta
ENSFCAG00000027589	XRN1	93	70.000	ENSCAPG00000004604	-	99	80.885	Cavia_aperea
ENSFCAG00000027589	XRN1	99	96.484	ENSCCAG00000034800	XRN1	99	95.210	Cebus_capucinus
ENSFCAG00000027589	XRN1	99	96.264	ENSCATG00000041794	XRN1	100	89.696	Cercocebus_atys
ENSFCAG00000027589	XRN1	99	95.824	ENSCLAG00000001451	XRN1	99	92.515	Chinchilla_lanigera
ENSFCAG00000027589	XRN1	99	96.264	ENSCSAG00000011265	XRN1	100	89.754	Chlorocebus_sabaeus
ENSFCAG00000027589	XRN1	54	98.701	ENSCHOG00000013961	-	54	98.701	Choloepus_hoffmanni
ENSFCAG00000027589	XRN1	82	69.129	ENSCING00000001334	-	95	70.652	Ciona_intestinalis
ENSFCAG00000027589	XRN1	98	62.335	ENSCSAVG00000008584	-	86	47.557	Ciona_savignyi
ENSFCAG00000027589	XRN1	99	96.264	ENSCANG00000037495	XRN1	99	96.108	Colobus_angolensis_palliatus
ENSFCAG00000027589	XRN1	99	94.725	ENSCGRG00001019411	Xrn1	99	93.413	Cricetulus_griseus_chok1gshd
ENSFCAG00000027589	XRN1	99	94.725	ENSCGRG00000012464	Xrn1	99	93.413	Cricetulus_griseus_crigri
ENSFCAG00000027589	XRN1	99	80.220	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSFCAG00000027589	XRN1	81	87.634	ENSCVAG00000013089	xrn1	99	66.960	Cyprinodon_variegatus
ENSFCAG00000027589	XRN1	99	81.878	ENSDARG00000091652	xrn1	98	67.158	Danio_rerio
ENSFCAG00000027589	XRN1	99	95.595	ENSDORG00000013833	Xrn1	100	82.649	Dipodomys_ordii
ENSFCAG00000027589	XRN1	98	53.982	FBgn0020261	pcm	76	36.862	Drosophila_melanogaster
ENSFCAG00000027589	XRN1	85	94.595	ENSETEG00000003978	XRN1	88	94.355	Echinops_telfairi
ENSFCAG00000027589	XRN1	99	96.484	ENSEASG00005002687	XRN1	99	95.509	Equus_asinus_asinus
ENSFCAG00000027589	XRN1	99	96.484	ENSECAG00000008301	XRN1	100	89.813	Equus_caballus
ENSFCAG00000027589	XRN1	99	95.415	ENSEEUG00000011323	XRN1	92	75.781	Erinaceus_europaeus
ENSFCAG00000027589	XRN1	99	81.360	ENSELUG00000000169	xrn1	100	57.769	Esox_lucius
ENSFCAG00000027589	XRN1	99	88.571	ENSFALG00000007021	XRN1	100	69.865	Ficedula_albicollis
ENSFCAG00000027589	XRN1	99	95.165	ENSFDAG00000020494	XRN1	99	90.286	Fukomys_damarensis
ENSFCAG00000027589	XRN1	79	65.385	ENSFHEG00000017356	-	98	63.816	Fundulus_heteroclitus
ENSFCAG00000027589	XRN1	98	79.601	ENSGMOG00000006396	xrn1	80	63.180	Gadus_morhua
ENSFCAG00000027589	XRN1	99	89.451	ENSGALG00000002706	XRN1	100	70.529	Gallus_gallus
ENSFCAG00000027589	XRN1	99	78.091	ENSGACG00000014328	xrn1	100	56.657	Gasterosteus_aculeatus
ENSFCAG00000027589	XRN1	99	87.500	ENSGAGG00000017535	XRN1	99	73.494	Gopherus_agassizii
ENSFCAG00000027589	XRN1	99	95.604	ENSGGOG00000008047	XRN1	100	89.110	Gorilla_gorilla
ENSFCAG00000027589	XRN1	99	76.522	ENSHBUG00000005908	xrn1	98	63.542	Haplochromis_burtoni
ENSFCAG00000027589	XRN1	99	95.824	ENSHGLG00000014476	XRN1	99	94.311	Heterocephalus_glaber_female
ENSFCAG00000027589	XRN1	99	95.824	ENSHGLG00100015130	XRN1	99	94.311	Heterocephalus_glaber_male
ENSFCAG00000027589	XRN1	98	80.132	ENSHCOG00000014062	xrn1	99	66.236	Hippocampus_comes
ENSFCAG00000027589	XRN1	99	81.182	ENSIPUG00000015229	xrn1	99	59.057	Ictalurus_punctatus
ENSFCAG00000027589	XRN1	99	96.703	ENSSTOG00000013552	XRN1	99	95.509	Ictidomys_tridecemlineatus
ENSFCAG00000027589	XRN1	93	94.419	ENSJJAG00000010863	Xrn1	99	92.515	Jaculus_jaculus
ENSFCAG00000027589	XRN1	99	79.869	ENSKMAG00000021356	xrn1	94	63.866	Kryptolebias_marmoratus
ENSFCAG00000027589	XRN1	99	78.242	ENSLBEG00000018656	xrn1	99	94.286	Labrus_bergylta
ENSFCAG00000027589	XRN1	99	85.495	ENSLACG00000009020	XRN1	100	65.812	Latimeria_chalumnae
ENSFCAG00000027589	XRN1	99	84.211	ENSLOCG00000007944	xrn1	98	62.309	Lepisosteus_oculatus
ENSFCAG00000027589	XRN1	99	95.824	ENSLAFG00000015426	XRN1	100	89.159	Loxodonta_africana
ENSFCAG00000027589	XRN1	99	96.484	ENSMFAG00000032599	XRN1	100	89.813	Macaca_fascicularis
ENSFCAG00000027589	XRN1	99	96.264	ENSMMUG00000014038	XRN1	100	89.754	Macaca_mulatta
ENSFCAG00000027589	XRN1	99	95.824	ENSMNEG00000034217	XRN1	100	89.578	Macaca_nemestrina
ENSFCAG00000027589	XRN1	100	96.957	ENSMLEG00000041349	-	100	96.957	Mandrillus_leucophaeus
ENSFCAG00000027589	XRN1	99	80.828	ENSMAMG00000013219	xrn1	96	67.244	Mastacembelus_armatus
ENSFCAG00000027589	XRN1	99	79.130	ENSMZEG00005015099	xrn1	96	58.848	Maylandia_zebra
ENSFCAG00000027589	XRN1	94	83.565	ENSMGAG00000006333	XRN1	100	70.366	Meleagris_gallopavo
ENSFCAG00000027589	XRN1	99	96.484	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSFCAG00000027589	XRN1	99	93.187	ENSMOCG00000008665	Xrn1	99	91.124	Microtus_ochrogaster
ENSFCAG00000027589	XRN1	77	74.366	ENSMMOG00000020896	-	96	57.090	Mola_mola
ENSFCAG00000027589	XRN1	99	92.088	ENSMODG00000021236	XRN1	100	77.376	Monodelphis_domestica
ENSFCAG00000027589	XRN1	99	77.193	ENSMALG00000004098	xrn1	100	53.598	Monopterus_albus
ENSFCAG00000027589	XRN1	99	94.066	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSFCAG00000027589	XRN1	99	94.286	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSFCAG00000027589	XRN1	99	94.286	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSFCAG00000027589	XRN1	99	94.286	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSFCAG00000027589	XRN1	99	97.143	ENSMPUG00000012040	XRN1	100	91.862	Mustela_putorius_furo
ENSFCAG00000027589	XRN1	99	96.044	ENSMLUG00000016885	XRN1	100	86.036	Myotis_lucifugus
ENSFCAG00000027589	XRN1	99	89.670	ENSNGAG00000023964	Xrn1	99	89.429	Nannospalax_galili
ENSFCAG00000027589	XRN1	99	96.484	ENSNLEG00000004726	XRN1	100	89.440	Nomascus_leucogenys
ENSFCAG00000027589	XRN1	75	98.969	ENSMEUG00000014473	-	74	99.029	Notamacropus_eugenii
ENSFCAG00000027589	XRN1	99	87.473	ENSOPRG00000007337	-	78	73.163	Ochotona_princeps
ENSFCAG00000027589	XRN1	99	79.956	ENSONIG00000016673	xrn1	99	61.628	Oreochromis_niloticus
ENSFCAG00000027589	XRN1	92	73.691	ENSOANG00000006735	XRN1	100	73.502	Ornithorhynchus_anatinus
ENSFCAG00000027589	XRN1	99	96.703	ENSOCUG00000001861	XRN1	100	85.624	Oryctolagus_cuniculus
ENSFCAG00000027589	XRN1	99	80.044	ENSORLG00000013005	xrn1	100	58.242	Oryzias_latipes
ENSFCAG00000027589	XRN1	99	80.044	ENSORLG00020005559	xrn1	100	59.004	Oryzias_latipes_hni
ENSFCAG00000027589	XRN1	99	80.044	ENSORLG00015022523	xrn1	96	59.429	Oryzias_latipes_hsok
ENSFCAG00000027589	XRN1	99	79.825	ENSOMEG00000015397	xrn1	100	68.562	Oryzias_melastigma
ENSFCAG00000027589	XRN1	99	96.923	ENSOGAG00000000170	XRN1	100	86.366	Otolemur_garnettii
ENSFCAG00000027589	XRN1	99	97.143	ENSOARG00000006343	XRN1	99	90.270	Ovis_aries
ENSFCAG00000027589	XRN1	99	95.824	ENSPPAG00000010180	XRN1	100	89.110	Pan_paniscus
ENSFCAG00000027589	XRN1	99	98.681	ENSPPRG00000007125	XRN1	100	94.926	Panthera_pardus
ENSFCAG00000027589	XRN1	99	98.681	ENSPTIG00000021081	XRN1	100	94.985	Panthera_tigris_altaica
ENSFCAG00000027589	XRN1	99	95.824	ENSPTRG00000015482	XRN1	100	89.169	Pan_troglodytes
ENSFCAG00000027589	XRN1	99	96.264	ENSPANG00000010638	XRN1	100	89.637	Papio_anubis
ENSFCAG00000027589	XRN1	99	87.527	ENSPSIG00000018050	XRN1	100	73.116	Pelodiscus_sinensis
ENSFCAG00000027589	XRN1	99	79.610	ENSPMGG00000002648	xrn1	98	68.612	Periophthalmus_magnuspinnatus
ENSFCAG00000027589	XRN1	99	95.165	ENSPEMG00000020610	Xrn1	99	91.916	Peromyscus_maniculatus_bairdii
ENSFCAG00000027589	XRN1	75	77.874	ENSPMAG00000002975	xrn1	91	68.966	Petromyzon_marinus
ENSFCAG00000027589	XRN1	99	91.648	ENSPCIG00000028735	XRN1	99	83.989	Phascolarctos_cinereus
ENSFCAG00000027589	XRN1	99	79.482	ENSPFOG00000013932	xrn1	99	61.321	Poecilia_formosa
ENSFCAG00000027589	XRN1	99	80.349	ENSPLAG00000021653	xrn1	99	60.787	Poecilia_latipinna
ENSFCAG00000027589	XRN1	99	79.521	ENSPMEG00000003076	xrn1	95	61.240	Poecilia_mexicana
ENSFCAG00000027589	XRN1	99	79.654	ENSPREG00000021147	xrn1	97	58.627	Poecilia_reticulata
ENSFCAG00000027589	XRN1	99	96.044	ENSPPYG00000014172	XRN1	100	89.052	Pongo_abelii
ENSFCAG00000027589	XRN1	93	93.953	ENSPCAG00000005638	XRN1	99	77.432	Procavia_capensis
ENSFCAG00000027589	XRN1	99	96.484	ENSPCOG00000013089	XRN1	99	95.808	Propithecus_coquereli
ENSFCAG00000027589	XRN1	99	86.154	ENSPVAG00000016265	XRN1	96	86.320	Pteropus_vampyrus
ENSFCAG00000027589	XRN1	99	79.348	ENSPNYG00000010570	xrn1	95	59.842	Pundamilia_nyererei
ENSFCAG00000027589	XRN1	98	78.901	ENSPNAG00000023531	xrn1	97	57.278	Pygocentrus_nattereri
ENSFCAG00000027589	XRN1	99	93.626	ENSRNOG00000042951	Xrn1	100	82.852	Rattus_norvegicus
ENSFCAG00000027589	XRN1	99	95.824	ENSRBIG00000041227	XRN1	100	89.110	Rhinopithecus_bieti
ENSFCAG00000027589	XRN1	100	96.304	ENSRROG00000033764	-	100	100.000	Rhinopithecus_roxellana
ENSFCAG00000027589	XRN1	80	54.496	YGL173C	XRN1	73	48.229	Saccharomyces_cerevisiae
ENSFCAG00000027589	XRN1	99	96.044	ENSSBOG00000029561	XRN1	100	89.052	Saimiri_boliviensis_boliviensis
ENSFCAG00000027589	XRN1	93	91.628	ENSSHAG00000016207	XRN1	100	76.818	Sarcophilus_harrisii
ENSFCAG00000027589	XRN1	99	80.044	ENSSFOG00015024211	xrn1	96	59.300	Scleropages_formosus
ENSFCAG00000027589	XRN1	99	81.182	ENSSMAG00000016534	xrn1	94	67.232	Scophthalmus_maximus
ENSFCAG00000027589	XRN1	99	82.237	ENSSDUG00000010306	xrn1	97	67.805	Seriola_dumerili
ENSFCAG00000027589	XRN1	99	82.237	ENSSLDG00000021543	xrn1	99	67.383	Seriola_lalandi_dorsalis
ENSFCAG00000027589	XRN1	94	91.647	ENSSARG00000007741	-	83	77.766	Sorex_araneus
ENSFCAG00000027589	XRN1	77	84.831	ENSSPUG00000010779	-	95	72.803	Sphenodon_punctatus
ENSFCAG00000027589	XRN1	80	74.194	ENSSPAG00000009856	-	96	64.980	Stegastes_partitus
ENSFCAG00000027589	XRN1	99	89.011	ENSTGUG00000008498	XRN1	100	72.390	Taeniopygia_guttata
ENSFCAG00000027589	XRN1	99	78.901	ENSTRUG00000004895	xrn1	96	64.375	Takifugu_rubripes
ENSFCAG00000027589	XRN1	99	78.728	ENSTNIG00000017615	xrn1	99	55.516	Tetraodon_nigroviridis
ENSFCAG00000027589	XRN1	85	96.675	ENSTBEG00000003256	XRN1	84	93.678	Tupaia_belangeri
ENSFCAG00000027589	XRN1	99	92.747	ENSTTRG00000012914	XRN1	100	86.995	Tursiops_truncatus
ENSFCAG00000027589	XRN1	100	90.989	ENSUAMG00000001608	XRN1	99	97.006	Ursus_americanus
ENSFCAG00000027589	XRN1	99	97.802	ENSUMAG00000013625	XRN1	100	92.861	Ursus_maritimus
ENSFCAG00000027589	XRN1	99	96.484	ENSVPAG00000004690	XRN1	100	87.588	Vicugna_pacos
ENSFCAG00000027589	XRN1	99	97.582	ENSVVUG00000024461	XRN1	98	100.000	Vulpes_vulpes
ENSFCAG00000027589	XRN1	99	84.902	ENSXETG00000000619	xrn1	97	89.247	Xenopus_tropicalis
ENSFCAG00000027589	XRN1	99	78.901	ENSXCOG00000007917	xrn1	95	58.845	Xiphophorus_couchianus
ENSFCAG00000027589	XRN1	99	78.022	ENSXMAG00000018320	xrn1	92	67.427	Xiphophorus_maculatus