EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFCAG00000027748 (Gene tree)
Gene ID: 101101392
Gene Symbol: YBX3
Alias: CSDA|CSDA1|ZONAB|dbpA
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Felis_catus
Status: putative
Strand: Minus strand
Length: 23629 bases
Position: chrB4:47296097-47319725
Accession: 101101392
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFCAP00000016434	CSD	PF00313.22	1.9e-26	1	1
ENSFCAP00000036431	CSD	PF00313.22	5e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFCAT00000036653	YBX3-202	915	XM_023256778	ENSFCAP00000036431	304 (aa)	XP_023112546	A0A2I2UVB4
ENSFCAT00000030044	YBX3-201	1119	XM_023256777	ENSFCAP00000016434	372 (aa)	XP_023112545	M3WQ04

Gene Model

Click here to download ENSFCAG00000027748's gene model file

Pathways

Pathway ID	Pathway Name	Source
fca04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSFCAG00000027748's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFCAG00000027748	YBX3	80	51.097	ENSFCAG00000022604	-	85	55.705

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFCAG00000027748	YBX3	100	93.770	ENSG00000060138	YBX3	100	92.246	Homo_sapiens
ENSFCAG00000027748	YBX3	96	91.011	ENSAMEG00000009393	YBX3	95	93.787	Ailuropoda_melanoleuca
ENSFCAG00000027748	YBX3	76	67.133	ENSAPLG00000003147	YBX3	68	100.000	Anas_platyrhynchos
ENSFCAG00000027748	YBX3	90	94.345	ENSANAG00000024492	-	93	95.254	Aotus_nancymaae
ENSFCAG00000027748	YBX3	99	84.615	ENSANAG00000033366	-	100	67.105	Aotus_nancymaae
ENSFCAG00000027748	YBX3	100	84.935	ENSBTAG00000009663	YBX3	88	84.911	Bos_taurus
ENSFCAG00000027748	YBX3	100	92.787	ENSCJAG00000021660	-	100	91.475	Callithrix_jacchus
ENSFCAG00000027748	YBX3	95	71.379	ENSCJAG00000033824	-	85	90.541	Callithrix_jacchus
ENSFCAG00000027748	YBX3	77	96.516	ENSCAFG00000013401	YBX3	100	97.706	Canis_familiaris
ENSFCAG00000027748	YBX3	100	93.566	ENSCAFG00020006412	YBX3	100	93.566	Canis_lupus_dingo
ENSFCAG00000027748	YBX3	100	84.935	ENSCHIG00000010863	YBX3	93	87.574	Capra_hircus
ENSFCAG00000027748	YBX3	77	95.470	ENSTSYG00000004204	-	88	95.470	Carlito_syrichta
ENSFCAG00000027748	YBX3	100	75.658	ENSTSYG00000035821	-	89	76.667	Carlito_syrichta
ENSFCAG00000027748	YBX3	77	87.456	ENSCAPG00000015039	YBX3	93	87.456	Cavia_aperea
ENSFCAG00000027748	YBX3	78	88.396	ENSCPOG00000011329	YBX3	86	88.396	Cavia_porcellus
ENSFCAG00000027748	YBX3	100	93.770	ENSCCAG00000016469	YBX3	100	92.131	Cebus_capucinus
ENSFCAG00000027748	YBX3	100	93.770	ENSCATG00000034411	YBX3	100	92.513	Cercocebus_atys
ENSFCAG00000027748	YBX3	77	88.153	ENSCLAG00000016030	YBX3	94	88.153	Chinchilla_lanigera
ENSFCAG00000027748	YBX3	100	93.583	ENSCSAG00000008744	YBX3	100	92.246	Chlorocebus_sabaeus
ENSFCAG00000027748	YBX3	94	81.609	ENSCHOG00000011988	YBX3	77	81.609	Choloepus_hoffmanni
ENSFCAG00000027748	YBX3	78	80.345	ENSCPBG00000014147	YBX3	81	79.452	Chrysemys_picta_bellii
ENSFCAG00000027748	YBX3	79	94.915	ENSCANG00000036801	YBX3	94	94.915	Colobus_angolensis_palliatus
ENSFCAG00000027748	YBX3	85	91.483	ENSCGRG00001016148	Ybx3	100	84.718	Cricetulus_griseus_chok1gshd
ENSFCAG00000027748	YBX3	77	91.438	ENSCGRG00000004563	Ybx3	98	90.068	Cricetulus_griseus_crigri
ENSFCAG00000027748	YBX3	90	82.647	ENSDORG00000009103	Ybx3	81	91.638	Dipodomys_ordii
ENSFCAG00000027748	YBX3	76	84.965	ENSETEG00000002557	YBX3	99	83.803	Echinops_telfairi
ENSFCAG00000027748	YBX3	100	89.785	ENSEASG00005014726	YBX3	100	89.247	Equus_asinus_asinus
ENSFCAG00000027748	YBX3	100	93.817	ENSECAG00000013777	YBX3	100	93.817	Equus_caballus
ENSFCAG00000027748	YBX3	76	95.070	ENSEEUG00000010415	YBX3	100	95.070	Erinaceus_europaeus
ENSFCAG00000027748	YBX3	71	94.444	ENSFALG00000003661	YBX3	71	98.837	Ficedula_albicollis
ENSFCAG00000027748	YBX3	77	85.366	ENSFDAG00000021192	YBX3	92	84.321	Fukomys_damarensis
ENSFCAG00000027748	YBX3	100	69.608	ENSGALG00000031890	YBX3	76	75.336	Gallus_gallus
ENSFCAG00000027748	YBX3	78	79.310	ENSGAGG00000017780	YBX3	77	83.408	Gopherus_agassizii
ENSFCAG00000027748	YBX3	100	94.098	ENSGGOG00000001352	YBX3	100	92.513	Gorilla_gorilla
ENSFCAG00000027748	YBX3	81	76.547	ENSHGLG00000014798	-	86	78.114	Heterocephalus_glaber_female
ENSFCAG00000027748	YBX3	73	80.364	ENSHGLG00000015495	-	88	76.333	Heterocephalus_glaber_female
ENSFCAG00000027748	YBX3	72	89.450	ENSHGLG00100003589	YBX3	87	89.450	Heterocephalus_glaber_male
ENSFCAG00000027748	YBX3	92	87.246	ENSSTOG00000032577	-	94	86.726	Ictidomys_tridecemlineatus
ENSFCAG00000027748	YBX3	77	88.502	ENSSTOG00000002108	-	88	84.536	Ictidomys_tridecemlineatus
ENSFCAG00000027748	YBX3	79	69.360	ENSJJAG00000014239	Ybx3	96	85.227	Jaculus_jaculus
ENSFCAG00000027748	YBX3	100	94.102	ENSLAFG00000017247	YBX3	100	93.029	Loxodonta_africana
ENSFCAG00000027748	YBX3	100	92.787	ENSMFAG00000039369	YBX3	100	91.711	Macaca_fascicularis
ENSFCAG00000027748	YBX3	87	93.231	ENSMMUG00000022469	YBX3	99	92.212	Macaca_mulatta
ENSFCAG00000027748	YBX3	100	92.787	ENSMNEG00000045109	YBX3	100	91.711	Macaca_nemestrina
ENSFCAG00000027748	YBX3	94	82.051	ENSMLEG00000033618	YBX3	79	94.774	Mandrillus_leucophaeus
ENSFCAG00000027748	YBX3	71	82.949	ENSMGAG00000014224	YBX3	100	80.645	Meleagris_gallopavo
ENSFCAG00000027748	YBX3	87	90.798	ENSMAUG00000012185	Ybx3	98	86.916	Mesocricetus_auratus
ENSFCAG00000027748	YBX3	100	75.987	ENSMICG00000031459	-	86	80.000	Microcebus_murinus
ENSFCAG00000027748	YBX3	100	92.761	ENSMICG00000038002	-	100	92.493	Microcebus_murinus
ENSFCAG00000027748	YBX3	81	93.399	ENSMOCG00000016291	Ybx3	96	91.864	Microtus_ochrogaster
ENSFCAG00000027748	YBX3	77	82.986	ENSMODG00000018248	YBX3	91	83.681	Monodelphis_domestica
ENSFCAG00000027748	YBX3	85	91.167	MGP_CAROLIEiJ_G0028947	Ybx3	100	84.718	Mus_caroli
ENSFCAG00000027748	YBX3	85	91.167	ENSMUSG00000030189	Ybx3	100	84.718	Mus_musculus
ENSFCAG00000027748	YBX3	85	91.167	MGP_PahariEiJ_G0022709	Ybx3	100	84.718	Mus_pahari
ENSFCAG00000027748	YBX3	85	91.483	MGP_SPRETEiJ_G0029994	Ybx3	100	84.987	Mus_spretus
ENSFCAG00000027748	YBX3	100	84.211	ENSMPUG00000011810	YBX3	100	83.421	Mustela_putorius_furo
ENSFCAG00000027748	YBX3	71	95.896	ENSMLUG00000007476	YBX3	100	95.896	Myotis_lucifugus
ENSFCAG00000027748	YBX3	85	85.535	ENSNGAG00000000710	Ybx3	100	83.534	Nannospalax_galili
ENSFCAG00000027748	YBX3	89	90.361	ENSNLEG00000034844	YBX3	91	89.097	Nomascus_leucogenys
ENSFCAG00000027748	YBX3	54	68.421	ENSMEUG00000002507	-	88	74.468	Notamacropus_eugenii
ENSFCAG00000027748	YBX3	86	83.750	ENSODEG00000017957	YBX3	94	83.750	Octodon_degus
ENSFCAG00000027748	YBX3	92	80.523	ENSOCUG00000001889	YBX3	85	87.458	Oryctolagus_cuniculus
ENSFCAG00000027748	YBX3	100	90.789	ENSOGAG00000013245	YBX3	100	90.526	Otolemur_garnettii
ENSFCAG00000027748	YBX3	69	98.969	ENSOARG00000020919	YBX3	99	83.784	Ovis_aries
ENSFCAG00000027748	YBX3	100	85.791	ENSPPAG00000039068	YBX3	82	95.254	Pan_paniscus
ENSFCAG00000027748	YBX3	100	99.731	ENSPPRG00000005859	YBX3	100	99.731	Panthera_pardus
ENSFCAG00000027748	YBX3	77	98.951	ENSPTIG00000005322	YBX3	81	98.951	Panthera_tigris_altaica
ENSFCAG00000027748	YBX3	100	94.426	ENSPTRG00000004681	YBX3	100	92.787	Pan_troglodytes
ENSFCAG00000027748	YBX3	100	93.443	ENSPANG00000010280	YBX3	100	92.246	Papio_anubis
ENSFCAG00000027748	YBX3	57	99.038	ENSPSIG00000009247	YBX3	90	100.000	Pelodiscus_sinensis
ENSFCAG00000027748	YBX3	87	91.331	ENSPEMG00000012132	-	99	87.850	Peromyscus_maniculatus_bairdii
ENSFCAG00000027748	YBX3	81	90.688	ENSPEMG00000010391	-	85	91.593	Peromyscus_maniculatus_bairdii
ENSFCAG00000027748	YBX3	69	81.853	ENSPCIG00000029949	YBX3	100	79.923	Phascolarctos_cinereus
ENSFCAG00000027748	YBX3	100	93.048	ENSPPYG00000004279	YBX3	100	91.979	Pongo_abelii
ENSFCAG00000027748	YBX3	78	90.785	ENSPCAG00000001397	YBX3	98	90.972	Procavia_capensis
ENSFCAG00000027748	YBX3	54	68.421	ENSPCOG00000011663	YBX3	100	88.506	Propithecus_coquereli
ENSFCAG00000027748	YBX3	100	82.306	ENSPVAG00000006740	YBX3	100	82.306	Pteropus_vampyrus
ENSFCAG00000027748	YBX3	85	91.798	ENSRNOG00000005480	Ybx3	100	84.987	Rattus_norvegicus
ENSFCAG00000027748	YBX3	100	92.131	ENSRBIG00000039208	YBX3	100	91.475	Rhinopithecus_bieti
ENSFCAG00000027748	YBX3	100	93.115	ENSRROG00000029638	YBX3	100	91.803	Rhinopithecus_roxellana
ENSFCAG00000027748	YBX3	92	84.503	ENSSBOG00000030573	YBX3	86	93.471	Saimiri_boliviensis_boliviensis
ENSFCAG00000027748	YBX3	65	98.837	ENSSHAG00000003262	YBX3	98	81.787	Sarcophilus_harrisii
ENSFCAG00000027748	YBX3	100	95.000	ENSSSCG00000000633	YBX3	100	95.000	Sus_scrofa
ENSFCAG00000027748	YBX3	70	98.077	ENSTGUG00000012047	YBX3	74	98.077	Taeniopygia_guttata
ENSFCAG00000027748	YBX3	100	85.523	ENSTBEG00000012570	YBX3	87	89.623	Tupaia_belangeri
ENSFCAG00000027748	YBX3	70	86.842	ENSTTRG00000008045	YBX3	100	86.842	Tursiops_truncatus
ENSFCAG00000027748	YBX3	74	91.697	ENSUAMG00000016662	YBX3	100	92.058	Ursus_americanus
ENSFCAG00000027748	YBX3	77	96.853	ENSUMAG00000016118	YBX3	94	96.853	Ursus_maritimus
ENSFCAG00000027748	YBX3	57	100.000	ENSVPAG00000000876	YBX3	100	73.852	Vicugna_pacos
ENSFCAG00000027748	YBX3	74	94.224	ENSVVUG00000004956	YBX3	100	94.224	Vulpes_vulpes
ENSFCAG00000027748	YBX3	53	92.222	ENSXETG00000016239	ybx3	90	68.142	Xenopus_tropicalis