EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFCAG00000027841 (Gene tree)
Gene ID: 101081777
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Felis_catus
Status: putative
Strand: Minus strand
Length: 147554 bases
Position: chrA1:814478-962031
Accession: 101081777
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFCAP00000039304	RRM_1	PF00076.22	1.3e-32	1	2
ENSFCAP00000039304	RRM_1	PF00076.22	1.3e-32	2	2
ENSFCAP00000037643	RRM_1	PF00076.22	1.4e-32	1	2
ENSFCAP00000037643	RRM_1	PF00076.22	1.4e-32	2	2
ENSFCAP00000020046	RRM_1	PF00076.22	3.2e-32	1	2
ENSFCAP00000020046	RRM_1	PF00076.22	3.2e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFCAT00000045003	-	1854	-	ENSFCAP00000039304	391 (aa)	-	A0A2I2UCV2
ENSFCAT00000041118	-	1200	-	ENSFCAP00000037643	399 (aa)	-	A0A2I2UYR7
ENSFCAT00000032098	-	4654	XM_006927147	ENSFCAP00000020046	521 (aa)	XP_006927209	M3X0A4

Gene Model

Click here to download ENSFCAG00000027841's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFCAG00000027841's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFCAG00000027841	PSPC1	89	60.390	ENSFCAG00000043511	-	77	69.613
ENSFCAG00000027841	PSPC1	81	74.528	ENSFCAG00000042862	SFPQ	51	68.579

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFCAG00000027841	PSPC1	100	98.853	ENSG00000121390	PSPC1	100	98.853	Homo_sapiens
ENSFCAG00000027841	PSPC1	83	81.173	ENSAPOG00000015946	pspc1	79	73.953	Acanthochromis_polyacanthus
ENSFCAG00000027841	PSPC1	100	99.424	ENSAMEG00000017420	PSPC1	100	99.424	Ailuropoda_melanoleuca
ENSFCAG00000027841	PSPC1	83	71.914	ENSACIG00000018695	pspc1	87	59.660	Amphilophus_citrinellus
ENSFCAG00000027841	PSPC1	83	80.556	ENSAOCG00000005279	pspc1	78	73.488	Amphiprion_ocellaris
ENSFCAG00000027841	PSPC1	83	80.556	ENSAPEG00000015927	pspc1	79	73.488	Amphiprion_percula
ENSFCAG00000027841	PSPC1	83	67.593	ENSATEG00000004878	pspc1	76	62.410	Anabas_testudineus
ENSFCAG00000027841	PSPC1	77	94.059	ENSAPLG00000006246	PSPC1	100	94.059	Anas_platyrhynchos
ENSFCAG00000027841	PSPC1	81	75.786	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSFCAG00000027841	PSPC1	89	91.845	ENSACAG00000002093	PSPC1	99	82.746	Anolis_carolinensis
ENSFCAG00000027841	PSPC1	73	70.732	ENSACAG00000013307	-	56	64.917	Anolis_carolinensis
ENSFCAG00000027841	PSPC1	100	98.848	ENSANAG00000000059	PSPC1	100	98.848	Aotus_nancymaae
ENSFCAG00000027841	PSPC1	98	63.728	ENSACLG00000027220	pspc1	87	59.101	Astatotilapia_calliptera
ENSFCAG00000027841	PSPC1	82	79.573	ENSAMXG00000036881	pspc1	80	73.333	Astyanax_mexicanus
ENSFCAG00000027841	PSPC1	100	96.545	ENSBTAG00000003934	PSPC1	100	96.545	Bos_taurus
ENSFCAG00000027841	PSPC1	100	98.848	ENSCJAG00000004554	PSPC1	100	98.848	Callithrix_jacchus
ENSFCAG00000027841	PSPC1	100	99.488	ENSCAFG00020002009	PSPC1	100	99.488	Canis_lupus_dingo
ENSFCAG00000027841	PSPC1	100	96.545	ENSCHIG00000016708	PSPC1	100	96.545	Capra_hircus
ENSFCAG00000027841	PSPC1	77	92.289	ENSTSYG00000032882	PSPC1	93	85.986	Carlito_syrichta
ENSFCAG00000027841	PSPC1	100	97.505	ENSCPOG00000000395	PSPC1	100	97.505	Cavia_porcellus
ENSFCAG00000027841	PSPC1	100	98.848	ENSCCAG00000033498	PSPC1	100	98.848	Cebus_capucinus
ENSFCAG00000027841	PSPC1	100	98.470	ENSCATG00000036434	PSPC1	100	98.470	Cercocebus_atys
ENSFCAG00000027841	PSPC1	88	88.337	ENSCLAG00000005241	PSPC1	99	88.337	Chinchilla_lanigera
ENSFCAG00000027841	PSPC1	98	96.114	ENSCHOG00000008913	PSPC1	100	91.013	Choloepus_hoffmanni
ENSFCAG00000027841	PSPC1	99	86.882	ENSCPBG00000020859	PSPC1	99	87.287	Chrysemys_picta_bellii
ENSFCAG00000027841	PSPC1	79	58.766	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSFCAG00000027841	PSPC1	67	100.000	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSFCAG00000027841	PSPC1	100	97.132	ENSCGRG00001018368	Pspc1	100	97.132	Cricetulus_griseus_chok1gshd
ENSFCAG00000027841	PSPC1	100	97.132	ENSCGRG00000011724	Pspc1	100	97.132	Cricetulus_griseus_crigri
ENSFCAG00000027841	PSPC1	81	78.616	ENSCVAG00000007679	-	78	68.720	Cyprinodon_variegatus
ENSFCAG00000027841	PSPC1	98	72.021	ENSDARG00000006621	pspc1	100	67.391	Danio_rerio
ENSFCAG00000027841	PSPC1	100	96.558	ENSDNOG00000011078	PSPC1	100	96.558	Dasypus_novemcinctus
ENSFCAG00000027841	PSPC1	100	94.073	ENSDORG00000016050	Pspc1	100	94.073	Dipodomys_ordii
ENSFCAG00000027841	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSFCAG00000027841	PSPC1	82	45.087	ENSEBUG00000010133	pspc1	82	47.302	Eptatretus_burgeri
ENSFCAG00000027841	PSPC1	82	73.313	ENSEBUG00000003964	-	62	72.464	Eptatretus_burgeri
ENSFCAG00000027841	PSPC1	100	98.464	ENSEASG00005000119	PSPC1	100	98.464	Equus_asinus_asinus
ENSFCAG00000027841	PSPC1	100	98.464	ENSECAG00000017286	PSPC1	100	98.464	Equus_caballus
ENSFCAG00000027841	PSPC1	88	81.875	ENSEEUG00000011288	-	100	66.027	Erinaceus_europaeus
ENSFCAG00000027841	PSPC1	98	71.970	ENSELUG00000003746	pspc1	81	79.586	Esox_lucius
ENSFCAG00000027841	PSPC1	89	94.861	ENSFALG00000008750	PSPC1	99	87.571	Ficedula_albicollis
ENSFCAG00000027841	PSPC1	100	95.777	ENSFDAG00000002617	PSPC1	100	95.777	Fukomys_damarensis
ENSFCAG00000027841	PSPC1	74	82.986	ENSGMOG00000015074	pspc1	86	66.091	Gadus_morhua
ENSFCAG00000027841	PSPC1	99	87.643	ENSGALG00000017142	PSPC1	99	87.689	Gallus_gallus
ENSFCAG00000027841	PSPC1	83	78.154	ENSGAFG00000006327	pspc1	68	77.676	Gambusia_affinis
ENSFCAG00000027841	PSPC1	85	72.810	ENSGACG00000014901	pspc1	92	73.414	Gasterosteus_aculeatus
ENSFCAG00000027841	PSPC1	99	86.882	ENSGAGG00000019164	PSPC1	99	87.097	Gopherus_agassizii
ENSFCAG00000027841	PSPC1	83	72.892	ENSGAGG00000017325	-	56	68.306	Gopherus_agassizii
ENSFCAG00000027841	PSPC1	100	98.662	ENSGGOG00000003414	PSPC1	100	98.662	Gorilla_gorilla
ENSFCAG00000027841	PSPC1	98	69.925	ENSHBUG00000001139	pspc1	100	64.299	Haplochromis_burtoni
ENSFCAG00000027841	PSPC1	100	97.889	ENSHGLG00000018811	PSPC1	100	97.889	Heterocephalus_glaber_female
ENSFCAG00000027841	PSPC1	89	93.103	ENSHGLG00100007962	PSPC1	100	93.103	Heterocephalus_glaber_male
ENSFCAG00000027841	PSPC1	83	74.154	ENSHCOG00000013251	pspc1	83	71.390	Hippocampus_comes
ENSFCAG00000027841	PSPC1	98	73.834	ENSIPUG00000013192	pspc1	88	73.885	Ictalurus_punctatus
ENSFCAG00000027841	PSPC1	100	98.088	ENSSTOG00000026833	PSPC1	100	98.088	Ictidomys_tridecemlineatus
ENSFCAG00000027841	PSPC1	100	97.514	ENSJJAG00000018334	Pspc1	100	97.514	Jaculus_jaculus
ENSFCAG00000027841	PSPC1	88	55.724	ENSKMAG00000013525	-	84	54.409	Kryptolebias_marmoratus
ENSFCAG00000027841	PSPC1	89	75.645	ENSLBEG00000004474	pspc1	71	77.477	Labrus_bergylta
ENSFCAG00000027841	PSPC1	99	76.580	ENSLACG00000010762	PSPC1	99	78.695	Latimeria_chalumnae
ENSFCAG00000027841	PSPC1	88	84.599	ENSLOCG00000010832	pspc1	99	77.885	Lepisosteus_oculatus
ENSFCAG00000027841	PSPC1	100	96.941	ENSLAFG00000010968	PSPC1	100	96.941	Loxodonta_africana
ENSFCAG00000027841	PSPC1	100	98.470	ENSMFAG00000032728	PSPC1	100	98.470	Macaca_fascicularis
ENSFCAG00000027841	PSPC1	100	98.470	ENSMMUG00000020262	PSPC1	100	98.470	Macaca_mulatta
ENSFCAG00000027841	PSPC1	100	98.470	ENSMNEG00000027401	PSPC1	100	98.470	Macaca_nemestrina
ENSFCAG00000027841	PSPC1	100	99.499	ENSMLEG00000039043	PSPC1	100	99.499	Mandrillus_leucophaeus
ENSFCAG00000027841	PSPC1	83	78.086	ENSMAMG00000004333	pspc1	77	71.860	Mastacembelus_armatus
ENSFCAG00000027841	PSPC1	98	63.728	ENSMZEG00005005726	pspc1	87	59.101	Maylandia_zebra
ENSFCAG00000027841	PSPC1	78	93.842	ENSMGAG00000015134	PSPC1	100	93.842	Meleagris_gallopavo
ENSFCAG00000027841	PSPC1	98	90.415	ENSMAUG00000021067	Pspc1	99	91.126	Mesocricetus_auratus
ENSFCAG00000027841	PSPC1	100	98.088	ENSMICG00000013970	PSPC1	100	98.088	Microcebus_murinus
ENSFCAG00000027841	PSPC1	100	97.132	ENSMOCG00000006060	Pspc1	100	97.132	Microtus_ochrogaster
ENSFCAG00000027841	PSPC1	90	53.501	ENSMMOG00000004352	pspc1	60	51.479	Mola_mola
ENSFCAG00000027841	PSPC1	98	96.632	ENSMODG00000008029	PSPC1	78	96.082	Monodelphis_domestica
ENSFCAG00000027841	PSPC1	83	77.469	ENSMALG00000008914	pspc1	88	67.804	Monopterus_albus
ENSFCAG00000027841	PSPC1	100	97.137	MGP_CAROLIEiJ_G0019341	Pspc1	100	97.137	Mus_caroli
ENSFCAG00000027841	PSPC1	100	97.328	ENSMUSG00000021938	Pspc1	100	97.328	Mus_musculus
ENSFCAG00000027841	PSPC1	100	97.137	MGP_PahariEiJ_G0030359	Pspc1	100	97.137	Mus_pahari
ENSFCAG00000027841	PSPC1	100	97.137	MGP_SPRETEiJ_G0020232	Pspc1	100	97.137	Mus_spretus
ENSFCAG00000027841	PSPC1	100	99.424	ENSMPUG00000013347	PSPC1	100	99.424	Mustela_putorius_furo
ENSFCAG00000027841	PSPC1	100	97.137	ENSMLUG00000017663	PSPC1	100	97.137	Myotis_lucifugus
ENSFCAG00000027841	PSPC1	100	97.323	ENSNGAG00000011271	Pspc1	100	97.323	Nannospalax_galili
ENSFCAG00000027841	PSPC1	98	64.899	ENSNBRG00000014059	pspc1	92	61.713	Neolamprologus_brichardi
ENSFCAG00000027841	PSPC1	100	98.662	ENSNLEG00000001294	PSPC1	100	98.662	Nomascus_leucogenys
ENSFCAG00000027841	PSPC1	84	93.359	ENSMEUG00000000476	PSPC1	84	94.531	Notamacropus_eugenii
ENSFCAG00000027841	PSPC1	100	86.564	ENSODEG00000007817	-	100	82.732	Octodon_degus
ENSFCAG00000027841	PSPC1	98	88.542	ENSODEG00000019012	-	100	87.097	Octodon_degus
ENSFCAG00000027841	PSPC1	98	70.175	ENSONIG00000012010	pspc1	99	63.586	Oreochromis_niloticus
ENSFCAG00000027841	PSPC1	99	66.475	ENSOANG00000011381	-	99	64.559	Ornithorhynchus_anatinus
ENSFCAG00000027841	PSPC1	77	97.995	ENSOANG00000009017	-	100	97.995	Ornithorhynchus_anatinus
ENSFCAG00000027841	PSPC1	100	97.897	ENSOCUG00000006153	PSPC1	100	97.897	Oryctolagus_cuniculus
ENSFCAG00000027841	PSPC1	83	79.012	ENSORLG00000004232	-	87	64.596	Oryzias_latipes
ENSFCAG00000027841	PSPC1	83	78.395	ENSORLG00020000578	PSPC1	87	65.618	Oryzias_latipes_hni
ENSFCAG00000027841	PSPC1	83	79.321	ENSORLG00015017480	pspc1	82	69.108	Oryzias_latipes_hsok
ENSFCAG00000027841	PSPC1	54	82.857	ENSOMEG00000003779	pspc1	96	82.775	Oryzias_melastigma
ENSFCAG00000027841	PSPC1	100	98.662	ENSOGAG00000012643	PSPC1	100	98.662	Otolemur_garnettii
ENSFCAG00000027841	PSPC1	100	91.778	ENSOARG00000014163	PSPC1	100	91.778	Ovis_aries
ENSFCAG00000027841	PSPC1	84	99.695	ENSPPAG00000009836	PSPC1	93	99.695	Pan_paniscus
ENSFCAG00000027841	PSPC1	100	100.000	ENSPPRG00000008833	PSPC1	100	100.000	Panthera_pardus
ENSFCAG00000027841	PSPC1	100	84.069	ENSPTIG00000016917	PSPC1	100	84.069	Panthera_tigris_altaica
ENSFCAG00000027841	PSPC1	100	97.710	ENSPTRG00000005677	PSPC1	99	98.765	Pan_troglodytes
ENSFCAG00000027841	PSPC1	100	98.662	ENSPANG00000001992	PSPC1	100	98.662	Papio_anubis
ENSFCAG00000027841	PSPC1	93	78.453	ENSPKIG00000003578	pspc1	81	77.650	Paramormyrops_kingsleyae
ENSFCAG00000027841	PSPC1	99	86.957	ENSPSIG00000005168	PSPC1	99	86.957	Pelodiscus_sinensis
ENSFCAG00000027841	PSPC1	82	69.018	ENSPMGG00000015135	pspc1	80	73.611	Periophthalmus_magnuspinnatus
ENSFCAG00000027841	PSPC1	100	97.514	ENSPEMG00000015214	Pspc1	100	97.514	Peromyscus_maniculatus_bairdii
ENSFCAG00000027841	PSPC1	71	44.948	ENSPMAG00000004618	pspc1	79	47.692	Petromyzon_marinus
ENSFCAG00000027841	PSPC1	99	96.552	ENSPCIG00000017680	PSPC1	100	96.552	Phascolarctos_cinereus
ENSFCAG00000027841	PSPC1	94	71.802	ENSPFOG00000003362	pspc1	88	68.288	Poecilia_formosa
ENSFCAG00000027841	PSPC1	97	70.025	ENSPLAG00000011540	pspc1	99	62.991	Poecilia_latipinna
ENSFCAG00000027841	PSPC1	76	68.687	ENSPLAG00000004407	-	52	60.647	Poecilia_latipinna
ENSFCAG00000027841	PSPC1	97	69.521	ENSPMEG00000008322	pspc1	99	62.942	Poecilia_mexicana
ENSFCAG00000027841	PSPC1	76	68.919	ENSPMEG00000001025	-	51	60.647	Poecilia_mexicana
ENSFCAG00000027841	PSPC1	97	69.270	ENSPREG00000007786	pspc1	99	62.617	Poecilia_reticulata
ENSFCAG00000027841	PSPC1	100	98.279	ENSPPYG00000005186	PSPC1	100	98.279	Pongo_abelii
ENSFCAG00000027841	PSPC1	72	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSFCAG00000027841	PSPC1	98	98.187	ENSPCOG00000014364	PSPC1	100	94.073	Propithecus_coquereli
ENSFCAG00000027841	PSPC1	98	97.396	ENSPVAG00000005036	PSPC1	100	95.202	Pteropus_vampyrus
ENSFCAG00000027841	PSPC1	98	64.232	ENSPNYG00000008893	pspc1	100	54.851	Pundamilia_nyererei
ENSFCAG00000027841	PSPC1	98	73.902	ENSPNAG00000016511	pspc1	100	68.224	Pygocentrus_nattereri
ENSFCAG00000027841	PSPC1	100	97.323	ENSRNOG00000020782	Pspc1	100	97.323	Rattus_norvegicus
ENSFCAG00000027841	PSPC1	93	99.179	ENSRBIG00000036057	PSPC1	100	99.179	Rhinopithecus_bieti
ENSFCAG00000027841	PSPC1	100	98.662	ENSRROG00000036334	PSPC1	100	98.662	Rhinopithecus_roxellana
ENSFCAG00000027841	PSPC1	79	88.862	ENSSBOG00000028172	PSPC1	88	97.770	Saimiri_boliviensis_boliviensis
ENSFCAG00000027841	PSPC1	100	90.476	ENSSHAG00000004696	PSPC1	100	91.238	Sarcophilus_harrisii
ENSFCAG00000027841	PSPC1	83	85.583	ENSSFOG00015001395	pspc1	90	78.605	Scleropages_formosus
ENSFCAG00000027841	PSPC1	88	74.230	ENSSMAG00000001761	pspc1	84	76.036	Scophthalmus_maximus
ENSFCAG00000027841	PSPC1	83	81.173	ENSSDUG00000010651	pspc1	76	74.419	Seriola_dumerili
ENSFCAG00000027841	PSPC1	83	74.303	ENSSLDG00000004284	pspc1	81	62.269	Seriola_lalandi_dorsalis
ENSFCAG00000027841	PSPC1	100	90.403	ENSSARG00000000888	PSPC1	100	90.403	Sorex_araneus
ENSFCAG00000027841	PSPC1	99	75.283	ENSSPUG00000008550	PSPC1	99	75.610	Sphenodon_punctatus
ENSFCAG00000027841	PSPC1	82	66.044	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSFCAG00000027841	PSPC1	83	80.864	ENSSPAG00000001921	pspc1	77	73.023	Stegastes_partitus
ENSFCAG00000027841	PSPC1	100	97.510	ENSSSCG00000009569	PSPC1	100	97.510	Sus_scrofa
ENSFCAG00000027841	PSPC1	89	94.861	ENSTGUG00000011295	PSPC1	100	94.861	Taeniopygia_guttata
ENSFCAG00000027841	PSPC1	83	71.077	ENSTRUG00000011335	pspc1	77	66.180	Takifugu_rubripes
ENSFCAG00000027841	PSPC1	85	72.508	ENSTNIG00000010358	pspc1	84	66.746	Tetraodon_nigroviridis
ENSFCAG00000027841	PSPC1	98	86.458	ENSTBEG00000002361	PSPC1	100	75.816	Tupaia_belangeri
ENSFCAG00000027841	PSPC1	100	97.697	ENSTTRG00000003343	PSPC1	100	97.697	Tursiops_truncatus
ENSFCAG00000027841	PSPC1	89	99.427	ENSUAMG00000012309	PSPC1	100	99.427	Ursus_americanus
ENSFCAG00000027841	PSPC1	93	99.384	ENSUMAG00000013993	PSPC1	100	99.440	Ursus_maritimus
ENSFCAG00000027841	PSPC1	77	99.248	ENSVPAG00000010029	PSPC1	100	99.248	Vicugna_pacos
ENSFCAG00000027841	PSPC1	100	99.499	ENSVVUG00000006414	PSPC1	100	99.499	Vulpes_vulpes
ENSFCAG00000027841	PSPC1	98	68.434	ENSXCOG00000017438	pspc1	93	68.274	Xiphophorus_couchianus
ENSFCAG00000027841	PSPC1	98	68.687	ENSXMAG00000007929	pspc1	93	68.528	Xiphophorus_maculatus