EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFCAG00000028270 (Gene tree)
Gene ID: 101080709
Gene Symbol: PABPC4L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Felis_catus
Status: putative
Strand: Plus strand
Length: 1113 bases
Position: chrB1:93566246-93567358
Accession: 101080709
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFCAP00000032785	RRM_5	PF13893.6	2.9e-15	1	3
ENSFCAP00000032785	RRM_5	PF13893.6	2.9e-15	2	3
ENSFCAP00000032785	RRM_5	PF13893.6	2.9e-15	3	3
ENSFCAP00000032785	RRM_1	PF00076.22	2e-85	1	4
ENSFCAP00000032785	RRM_1	PF00076.22	2e-85	2	4
ENSFCAP00000032785	RRM_1	PF00076.22	2e-85	3	4
ENSFCAP00000032785	RRM_1	PF00076.22	2e-85	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFCAT00000031728	PABPC4L-201	1113	XM_023252811	ENSFCAP00000032785	370 (aa)	XP_023108579	A0A2I2UJZ3

Gene Model

Click here to download ENSFCAG00000028270's gene model file

Pathways

Pathway ID	Pathway Name	Source
fca03013	RNA transport	KEGG
fca03015	mRNA surveillance pathway	KEGG
fca03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSFCAG00000028270's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFCAG00000028270	PABPC4L	61	40.000	ENSFCAG00000013724	CIRBP	51	40.000
ENSFCAG00000028270	PABPC4L	69	35.616	ENSFCAG00000007127	CELF5	50	34.667
ENSFCAG00000028270	PABPC4L	99	40.526	ENSFCAG00000010106	SF3B4	56	40.526
ENSFCAG00000028270	PABPC4L	99	74.865	ENSFCAG00000015254	-	63	74.865
ENSFCAG00000028270	PABPC4L	96	62.564	ENSFCAG00000039701	-	98	62.564
ENSFCAG00000028270	PABPC4L	94	30.588	ENSFCAG00000012028	RBMS2	52	30.588
ENSFCAG00000028270	PABPC4L	81	42.308	ENSFCAG00000002245	RBM3	72	42.308
ENSFCAG00000028270	PABPC4L	86	33.871	ENSFCAG00000034143	ELAVL1	88	33.871
ENSFCAG00000028270	PABPC4L	98	63.764	ENSFCAG00000004998	PABPC5	96	63.736
ENSFCAG00000028270	PABPC4L	99	71.038	ENSFCAG00000001874	PABPC1	60	71.038
ENSFCAG00000028270	PABPC4L	99	64.595	ENSFCAG00000011692	PABPC1L	63	64.595
ENSFCAG00000028270	PABPC4L	70	30.726	ENSFCAG00000042512	-	81	30.726
ENSFCAG00000028270	PABPC4L	98	30.519	ENSFCAG00000011976	ELAVL2	97	30.519

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFCAG00000028270	PABPC4L	99	90.244	ENSG00000254535	PABPC4L	99	90.244	Homo_sapiens
ENSFCAG00000028270	PABPC4L	99	87.805	ENSANAG00000017199	PABPC4L	86	87.805	Aotus_nancymaae
ENSFCAG00000028270	PABPC4L	100	93.514	ENSBTAG00000046902	PABPC4L	100	93.514	Bos_taurus
ENSFCAG00000028270	PABPC4L	99	88.076	ENSCJAG00000045332	PABPC4L	86	88.076	Callithrix_jacchus
ENSFCAG00000028270	PABPC4L	99	76.902	ENSCAFG00020019182	-	55	76.902	Canis_lupus_dingo
ENSFCAG00000028270	PABPC4L	100	93.243	ENSCHIG00000007231	PABPC4L	100	93.243	Capra_hircus
ENSFCAG00000028270	PABPC4L	97	80.240	ENSCAPG00000000555	PABPC4L	100	80.240	Cavia_aperea
ENSFCAG00000028270	PABPC4L	99	77.236	ENSCPOG00000033167	PABPC4L	100	77.236	Cavia_porcellus
ENSFCAG00000028270	PABPC4L	99	88.076	ENSCCAG00000031681	PABPC4L	86	88.076	Cebus_capucinus
ENSFCAG00000028270	PABPC4L	99	81.572	ENSCLAG00000017628	PABPC4L	99	81.572	Chinchilla_lanigera
ENSFCAG00000028270	PABPC4L	99	87.534	ENSCANG00000037677	PABPC4L	99	87.534	Colobus_angolensis_palliatus
ENSFCAG00000028270	PABPC4L	99	80.488	ENSCGRG00001002070	Pabpc4l	99	80.488	Cricetulus_griseus_chok1gshd
ENSFCAG00000028270	PABPC4L	99	80.488	ENSCGRG00000020086	Pabpc4l	99	80.488	Cricetulus_griseus_crigri
ENSFCAG00000028270	PABPC4L	99	90.244	ENSDNOG00000031077	PABPC4L	95	90.244	Dasypus_novemcinctus
ENSFCAG00000028270	PABPC4L	100	92.703	ENSEASG00005007883	PABPC4L	100	92.703	Equus_asinus_asinus
ENSFCAG00000028270	PABPC4L	100	93.243	ENSECAG00000031416	PABPC4L	100	93.243	Equus_caballus
ENSFCAG00000028270	PABPC4L	100	81.351	ENSFDAG00000019606	PABPC4L	100	81.351	Fukomys_damarensis
ENSFCAG00000028270	PABPC4L	99	89.702	ENSGGOG00000024991	PABPC4L	99	89.702	Gorilla_gorilla
ENSFCAG00000028270	PABPC4L	100	81.622	ENSHGLG00000020104	PABPC4L	100	81.622	Heterocephalus_glaber_female
ENSFCAG00000028270	PABPC4L	100	81.622	ENSHGLG00100020648	PABPC4L	100	81.622	Heterocephalus_glaber_male
ENSFCAG00000028270	PABPC4L	99	84.865	ENSSTOG00000019472	PABPC4L	99	84.865	Ictidomys_tridecemlineatus
ENSFCAG00000028270	PABPC4L	100	81.081	ENSJJAG00000004090	Pabpc4l	100	81.081	Jaculus_jaculus
ENSFCAG00000028270	PABPC4L	99	79.946	ENSMAUG00000016313	Pabpc4l	99	79.946	Mesocricetus_auratus
ENSFCAG00000028270	PABPC4L	99	90.515	ENSMICG00000029683	PABPC4L	99	90.515	Microcebus_murinus
ENSFCAG00000028270	PABPC4L	99	81.843	ENSMOCG00000007551	Pabpc4l	99	81.843	Microtus_ochrogaster
ENSFCAG00000028270	PABPC4L	99	78.862	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.000	Mus_caroli
ENSFCAG00000028270	PABPC4L	99	78.591	ENSMUSG00000090919	Pabpc4l	100	80.000	Mus_musculus
ENSFCAG00000028270	PABPC4L	99	78.862	MGP_PahariEiJ_G0026409	Pabpc4l	100	78.000	Mus_pahari
ENSFCAG00000028270	PABPC4L	99	78.049	MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.000	Mus_spretus
ENSFCAG00000028270	PABPC4L	99	81.572	ENSMLUG00000008254	PABPC4L	99	81.572	Myotis_lucifugus
ENSFCAG00000028270	PABPC4L	99	84.553	ENSNGAG00000001502	Pabpc4l	99	84.553	Nannospalax_galili
ENSFCAG00000028270	PABPC4L	99	89.973	ENSNLEG00000019300	PABPC4L	99	89.973	Nomascus_leucogenys
ENSFCAG00000028270	PABPC4L	99	83.469	ENSOGAG00000026166	PABPC4L	99	83.469	Otolemur_garnettii
ENSFCAG00000028270	PABPC4L	99	90.712	ENSPPAG00000043745	PABPC4L	93	90.712	Pan_paniscus
ENSFCAG00000028270	PABPC4L	100	99.459	ENSPPRG00000018628	PABPC4L	100	99.459	Panthera_pardus
ENSFCAG00000028270	PABPC4L	100	100.000	ENSPTIG00000010106	PABPC4L	100	100.000	Panthera_tigris_altaica
ENSFCAG00000028270	PABPC4L	99	90.712	ENSPTRG00000045513	-	78	90.712	Pan_troglodytes
ENSFCAG00000028270	PABPC4L	99	80.488	ENSPEMG00000012565	Pabpc4l	99	80.488	Peromyscus_maniculatus_bairdii
ENSFCAG00000028270	PABPC4L	99	89.973	ENSPCOG00000025578	PABPC4L	99	89.973	Propithecus_coquereli
ENSFCAG00000028270	PABPC4L	99	79.404	ENSRNOG00000029749	Pabpc4l	99	79.404	Rattus_norvegicus
ENSFCAG00000028270	PABPC4L	99	86.992	ENSRBIG00000030229	PABPC4L	99	86.992	Rhinopithecus_bieti
ENSFCAG00000028270	PABPC4L	99	86.721	ENSRROG00000020367	PABPC4L	99	86.721	Rhinopithecus_roxellana
ENSFCAG00000028270	PABPC4L	99	86.450	ENSSBOG00000016382	PABPC4L	99	86.450	Saimiri_boliviensis_boliviensis
ENSFCAG00000028270	PABPC4L	100	87.568	ENSSSCG00000009067	PABPC4L	100	87.568	Sus_scrofa
ENSFCAG00000028270	PABPC4L	100	96.757	ENSUAMG00000001289	PABPC4L	100	96.757	Ursus_americanus
ENSFCAG00000028270	PABPC4L	100	96.757	ENSUMAG00000014887	PABPC4L	100	96.757	Ursus_maritimus
ENSFCAG00000028270	PABPC4L	96	78.659	ENSVVUG00000011060	-	89	78.659	Vulpes_vulpes