EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSFCAG00000028292 (Gene tree)
Gene ID: 493923
Gene Symbol: SMN
Alias: SMN1
Full Name: survival motor neuron
Gene Type: protein_coding
Species: Felis_catus
Status: putative
Strand: Minus strand
Length: 40739 bases
Position: chrA1:138510638-138551376
Accession: 493923
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFCAP00000032539	SMN	PF06003.12	8.1e-107	1	1
ENSFCAP00000019138	SMN	PF06003.12	2e-103	1	1
ENSFCAP00000050563	SMN	PF06003.12	5.4e-93	1	2
ENSFCAP00000050563	SMN	PF06003.12	5.4e-93	2	2
ENSFCAP00000041764	SMN	PF06003.12	9.1e-59	1	2
ENSFCAP00000041764	SMN	PF06003.12	9.1e-59	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFCAT00000052455	-	780	-	ENSFCAP00000050563	259 (aa)	-	UPI0005ACFF05
ENSFCAT00000053757	-	672	-	ENSFCAP00000041764	223 (aa)	-	UPI000DE7E701
ENSFCAT00000031796	-	885	-	ENSFCAP00000019138	294 (aa)	-	R4GF28
ENSFCAT00000035487	-	1274	XM_006927779	ENSFCAP00000032539	290 (aa)	XP_006927841	Q8HYB8

Gene Model

Click here to download ENSFCAG00000028292's gene model file

Pathways

Pathway ID	Pathway Name	Source
fca03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSFCAG00000028292's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFCAG00000028292	SMN	97	90.036	ENSG00000205571	SMN2	99	88.699	Homo_sapiens
ENSFCAG00000028292	SMN	97	90.036	ENSG00000172062	SMN1	99	88.699	Homo_sapiens
ENSFCAG00000028292	SMN	93	51.264	ENSAPOG00000011324	smn1	94	50.916	Acanthochromis_polyacanthus
ENSFCAG00000028292	SMN	97	92.908	ENSAMEG00000003316	-	96	92.759	Ailuropoda_melanoleuca
ENSFCAG00000028292	SMN	89	51.128	ENSACIG00000019772	-	97	50.192	Amphilophus_citrinellus
ENSFCAG00000028292	SMN	93	51.986	ENSAOCG00000024444	smn1	94	52.347	Amphiprion_ocellaris
ENSFCAG00000028292	SMN	93	52.347	ENSAPEG00000016504	smn1	94	52.708	Amphiprion_percula
ENSFCAG00000028292	SMN	90	53.875	ENSATEG00000002182	smn1	79	54.444	Anabas_testudineus
ENSFCAG00000028292	SMN	69	58.794	ENSAPLG00000010912	-	97	56.281	Anas_platyrhynchos
ENSFCAG00000028292	SMN	92	71.875	ENSACAG00000010017	-	99	58.644	Anolis_carolinensis
ENSFCAG00000028292	SMN	99	85.034	ENSANAG00000032133	-	99	85.034	Aotus_nancymaae
ENSFCAG00000028292	SMN	93	52.518	ENSACLG00000007308	smn1	88	55.212	Astatotilapia_calliptera
ENSFCAG00000028292	SMN	55	57.042	ENSAMXG00000013884	smn1	97	49.458	Astyanax_mexicanus
ENSFCAG00000028292	SMN	97	85.816	ENSBTAG00000005743	SMN2	99	85.714	Bos_taurus
ENSFCAG00000028292	SMN	87	30.263	WBGene00004887	smn-1	94	30.317	Caenorhabditis_elegans
ENSFCAG00000028292	SMN	96	91.250	ENSCJAG00000016290	-	99	87.692	Callithrix_jacchus
ENSFCAG00000028292	SMN	100	91.724	ENSCAFG00000007812	SMN	100	91.724	Canis_familiaris
ENSFCAG00000028292	SMN	99	91.696	ENSCAFG00020019229	-	93	91.696	Canis_lupus_dingo
ENSFCAG00000028292	SMN	97	86.268	ENSCHIG00000015559	-	100	84.512	Capra_hircus
ENSFCAG00000028292	SMN	99	90.045	ENSTSYG00000012058	-	99	90.045	Carlito_syrichta
ENSFCAG00000028292	SMN	77	67.841	ENSCAPG00000011021	-	100	68.282	Cavia_aperea
ENSFCAG00000028292	SMN	100	80.952	ENSCPOG00000036973	-	100	80.272	Cavia_porcellus
ENSFCAG00000028292	SMN	99	81.229	ENSCPOG00000012328	-	100	80.201	Cavia_porcellus
ENSFCAG00000028292	SMN	96	90.000	ENSCCAG00000018127	-	99	87.054	Cebus_capucinus
ENSFCAG00000028292	SMN	97	88.968	ENSCATG00000037002	-	99	87.692	Cercocebus_atys
ENSFCAG00000028292	SMN	100	79.866	ENSCLAG00000000284	-	100	79.866	Chinchilla_lanigera
ENSFCAG00000028292	SMN	97	89.324	ENSCSAG00000015688	-	99	88.014	Chlorocebus_sabaeus
ENSFCAG00000028292	SMN	87	76.984	ENSCHOG00000007346	-	100	76.190	Choloepus_hoffmanni
ENSFCAG00000028292	SMN	99	63.265	ENSCPBG00000010968	-	99	64.815	Chrysemys_picta_bellii
ENSFCAG00000028292	SMN	97	89.643	ENSCANG00000038242	-	100	88.129	Colobus_angolensis_palliatus
ENSFCAG00000028292	SMN	99	78.927	ENSCANG00000033324	-	99	77.692	Colobus_angolensis_palliatus
ENSFCAG00000028292	SMN	100	82.759	ENSCGRG00001017959	-	100	82.759	Cricetulus_griseus_chok1gshd
ENSFCAG00000028292	SMN	100	64.483	ENSCGRG00001016998	-	100	65.172	Cricetulus_griseus_chok1gshd
ENSFCAG00000028292	SMN	100	82.759	ENSCGRG00000007698	Smn1	100	82.759	Cricetulus_griseus_crigri
ENSFCAG00000028292	SMN	79	62.857	ENSCSEG00000015227	smn1	97	50.877	Cynoglossus_semilaevis
ENSFCAG00000028292	SMN	92	51.986	ENSCVAG00000007498	smn1	94	50.182	Cyprinodon_variegatus
ENSFCAG00000028292	SMN	94	51.601	ENSDARG00000018494	smn1	96	52.364	Danio_rerio
ENSFCAG00000028292	SMN	80	71.014	ENSDNOG00000045949	-	96	70.742	Dasypus_novemcinctus
ENSFCAG00000028292	SMN	83	87.190	ENSDNOG00000007283	-	100	87.190	Dasypus_novemcinctus
ENSFCAG00000028292	SMN	96	83.217	ENSDORG00000007082	Smn1	99	76.792	Dipodomys_ordii
ENSFCAG00000028292	SMN	80	71.498	ENSETEG00000001406	-	93	71.354	Echinops_telfairi
ENSFCAG00000028292	SMN	93	36.755	ENSEBUG00000011902	smn1	92	38.351	Eptatretus_burgeri
ENSFCAG00000028292	SMN	96	77.857	ENSEASG00005018000	-	98	77.385	Equus_asinus_asinus
ENSFCAG00000028292	SMN	100	88.316	ENSECAG00000015215	-	100	88.660	Equus_caballus
ENSFCAG00000028292	SMN	87	80.876	ENSEEUG00000015777	-	100	80.876	Erinaceus_europaeus
ENSFCAG00000028292	SMN	92	55.036	ENSELUG00000018067	smn1	94	52.985	Esox_lucius
ENSFCAG00000028292	SMN	90	62.879	ENSFALG00000012320	-	91	60.837	Ficedula_albicollis
ENSFCAG00000028292	SMN	100	79.530	ENSFDAG00000017683	-	100	79.530	Fukomys_damarensis
ENSFCAG00000028292	SMN	69	54.190	ENSFHEG00000018508	smn1	96	50.542	Fundulus_heteroclitus
ENSFCAG00000028292	SMN	96	50.538	ENSGMOG00000017279	smn1	95	47.670	Gadus_morhua
ENSFCAG00000028292	SMN	93	61.255	ENSGALG00000002430	SMN	95	59.779	Gallus_gallus
ENSFCAG00000028292	SMN	92	53.719	ENSGAFG00000009501	smn1	94	53.137	Gambusia_affinis
ENSFCAG00000028292	SMN	92	55.147	ENSGACG00000010584	smn1	91	53.160	Gasterosteus_aculeatus
ENSFCAG00000028292	SMN	92	35.507	ENSGAGG00000013639	-	92	37.912	Gopherus_agassizii
ENSFCAG00000028292	SMN	99	64.835	ENSGAGG00000011374	-	99	61.224	Gopherus_agassizii
ENSFCAG00000028292	SMN	96	74.699	ENSGGOG00000026704	-	91	86.154	Gorilla_gorilla
ENSFCAG00000028292	SMN	95	86.992	ENSGGOG00000003872	-	100	87.854	Gorilla_gorilla
ENSFCAG00000028292	SMN	92	52.256	ENSHBUG00000013987	smn1	94	55.805	Haplochromis_burtoni
ENSFCAG00000028292	SMN	100	80.000	ENSHGLG00000001018	-	100	79.530	Heterocephalus_glaber_female
ENSFCAG00000028292	SMN	100	77.816	ENSHGLG00000001905	-	100	78.472	Heterocephalus_glaber_female
ENSFCAG00000028292	SMN	100	80.000	ENSHGLG00100011252	-	100	79.530	Heterocephalus_glaber_male
ENSFCAG00000028292	SMN	96	77.224	ENSHGLG00100018676	-	100	77.899	Heterocephalus_glaber_male
ENSFCAG00000028292	SMN	95	48.780	ENSHCOG00000017136	smn1	93	48.410	Hippocampus_comes
ENSFCAG00000028292	SMN	94	51.812	ENSIPUG00000012580	smn1	86	51.812	Ictalurus_punctatus
ENSFCAG00000028292	SMN	91	88.302	ENSSTOG00000012288	-	100	87.410	Ictidomys_tridecemlineatus
ENSFCAG00000028292	SMN	67	62.644	ENSJJAG00000014853	-	89	62.857	Jaculus_jaculus
ENSFCAG00000028292	SMN	92	53.047	ENSKMAG00000007239	smn1	96	50.769	Kryptolebias_marmoratus
ENSFCAG00000028292	SMN	93	51.601	ENSLBEG00000022550	smn1	94	52.574	Labrus_bergylta
ENSFCAG00000028292	SMN	93	38.542	ENSLACG00000009808	-	93	38.621	Latimeria_chalumnae
ENSFCAG00000028292	SMN	92	51.417	ENSLOCG00000011339	smn1	93	54.065	Lepisosteus_oculatus
ENSFCAG00000028292	SMN	100	86.395	ENSLAFG00000003425	-	100	83.099	Loxodonta_africana
ENSFCAG00000028292	SMN	97	90.036	ENSMFAG00000031523	SMN1	99	88.699	Macaca_fascicularis
ENSFCAG00000028292	SMN	97	85.053	ENSMFAG00000008812	-	99	84.247	Macaca_fascicularis
ENSFCAG00000028292	SMN	97	90.036	ENSMMUG00000020214	SMN1	99	88.699	Macaca_mulatta
ENSFCAG00000028292	SMN	97	84.342	ENSMMUG00000030594	-	99	83.562	Macaca_mulatta
ENSFCAG00000028292	SMN	76	76.923	ENSMNEG00000036423	-	86	77.376	Macaca_nemestrina
ENSFCAG00000028292	SMN	97	89.680	ENSMNEG00000035094	-	99	88.530	Macaca_nemestrina
ENSFCAG00000028292	SMN	97	89.324	ENSMLEG00000041902	-	99	88.077	Mandrillus_leucophaeus
ENSFCAG00000028292	SMN	92	52.015	ENSMAMG00000011034	smn1	94	52.206	Mastacembelus_armatus
ENSFCAG00000028292	SMN	92	52.727	ENSMZEG00005013634	smn1	94	55.431	Maylandia_zebra
ENSFCAG00000028292	SMN	68	57.576	ENSMGAG00000008889	-	95	55.556	Meleagris_gallopavo
ENSFCAG00000028292	SMN	100	80.690	ENSMAUG00000010262	Smn1	100	80.690	Mesocricetus_auratus
ENSFCAG00000028292	SMN	97	74.648	ENSMICG00000034708	-	100	86.813	Microcebus_murinus
ENSFCAG00000028292	SMN	100	80.690	ENSMOCG00000017833	Smn1	100	80.690	Microtus_ochrogaster
ENSFCAG00000028292	SMN	93	48.540	ENSMMOG00000005504	smn1	94	49.810	Mola_mola
ENSFCAG00000028292	SMN	89	82.540	ENSMODG00000001436	-	99	69.521	Monodelphis_domestica
ENSFCAG00000028292	SMN	92	51.648	ENSMALG00000008025	smn1	94	51.838	Monopterus_albus
ENSFCAG00000028292	SMN	100	81.100	MGP_CAROLIEiJ_G0018836	Smn1	100	81.443	Mus_caroli
ENSFCAG00000028292	SMN	100	81.100	ENSMUSG00000021645	Smn1	100	81.443	Mus_musculus
ENSFCAG00000028292	SMN	100	78.276	MGP_PahariEiJ_G0015911	Smn1	100	79.310	Mus_pahari
ENSFCAG00000028292	SMN	100	80.412	MGP_SPRETEiJ_G0019718	Smn1	100	80.756	Mus_spretus
ENSFCAG00000028292	SMN	96	93.262	ENSMPUG00000014470	-	99	93.262	Mustela_putorius_furo
ENSFCAG00000028292	SMN	97	88.927	ENSMLUG00000010603	-	96	88.294	Myotis_lucifugus
ENSFCAG00000028292	SMN	100	83.793	ENSNGAG00000019833	Smn1	100	83.793	Nannospalax_galili
ENSFCAG00000028292	SMN	92	54.348	ENSNBRG00000023000	smn1	94	55.185	Neolamprologus_brichardi
ENSFCAG00000028292	SMN	99	88.699	ENSNLEG00000004454	-	99	88.699	Nomascus_leucogenys
ENSFCAG00000028292	SMN	78	62.996	ENSMEUG00000011393	-	99	64.474	Notamacropus_eugenii
ENSFCAG00000028292	SMN	87	81.423	ENSOPRG00000002015	-	100	81.423	Ochotona_princeps
ENSFCAG00000028292	SMN	95	82.545	ENSODEG00000015976	-	97	82.609	Octodon_degus
ENSFCAG00000028292	SMN	93	51.661	ENSONIG00000011799	smn1	95	54.412	Oreochromis_niloticus
ENSFCAG00000028292	SMN	82	91.304	ENSOANG00000001626	-	96	66.667	Ornithorhynchus_anatinus
ENSFCAG00000028292	SMN	100	85.223	ENSOCUG00000017097	-	99	85.223	Oryctolagus_cuniculus
ENSFCAG00000028292	SMN	99	82.192	ENSOCUG00000025183	-	100	77.966	Oryctolagus_cuniculus
ENSFCAG00000028292	SMN	99	80.000	ENSOCUG00000026649	-	99	82.712	Oryctolagus_cuniculus
ENSFCAG00000028292	SMN	60	60.645	ENSORLG00000010552	smn1	94	52.015	Oryzias_latipes
ENSFCAG00000028292	SMN	92	54.032	ENSORLG00020007936	smn1	93	54.878	Oryzias_latipes_hni
ENSFCAG00000028292	SMN	60	60.000	ENSORLG00015022425	smn1	94	52.381	Oryzias_latipes_hsok
ENSFCAG00000028292	SMN	58	63.576	ENSOMEG00000007824	smn1	94	53.261	Oryzias_melastigma
ENSFCAG00000028292	SMN	90	86.508	ENSOGAG00000031414	-	100	77.163	Otolemur_garnettii
ENSFCAG00000028292	SMN	95	84.364	ENSOARG00000005425	-	100	84.364	Ovis_aries
ENSFCAG00000028292	SMN	97	89.680	ENSPPAG00000036640	-	99	88.444	Pan_paniscus
ENSFCAG00000028292	SMN	100	99.655	ENSPPRG00000005575	-	100	99.655	Panthera_pardus
ENSFCAG00000028292	SMN	100	99.614	ENSPTIG00000007745	-	100	99.614	Panthera_tigris_altaica
ENSFCAG00000028292	SMN	97	88.732	ENSPTRG00000016955	-	99	88.077	Pan_troglodytes
ENSFCAG00000028292	SMN	96	84.173	ENSPANG00000000253	-	98	83.391	Papio_anubis
ENSFCAG00000028292	SMN	99	88.699	ENSPANG00000013601	-	99	88.699	Papio_anubis
ENSFCAG00000028292	SMN	55	91.892	ENSPKIG00000011096	smn1	94	51.866	Paramormyrops_kingsleyae
ENSFCAG00000028292	SMN	93	60.563	ENSPSIG00000014787	-	90	58.511	Pelodiscus_sinensis
ENSFCAG00000028292	SMN	74	86.486	ENSPMGG00000012285	smn1	94	50.566	Periophthalmus_magnuspinnatus
ENSFCAG00000028292	SMN	90	41.544	ENSPMAG00000005004	smn1	96	39.792	Petromyzon_marinus
ENSFCAG00000028292	SMN	90	82.812	ENSPCIG00000025764	-	100	69.521	Phascolarctos_cinereus
ENSFCAG00000028292	SMN	92	53.025	ENSPFOG00000007786	smn1	94	53.875	Poecilia_formosa
ENSFCAG00000028292	SMN	92	56.198	ENSPLAG00000012071	smn1	93	56.432	Poecilia_latipinna
ENSFCAG00000028292	SMN	92	55.785	ENSPMEG00000017085	smn1	93	56.017	Poecilia_mexicana
ENSFCAG00000028292	SMN	92	56.612	ENSPREG00000005824	smn1	93	56.846	Poecilia_reticulata
ENSFCAG00000028292	SMN	92	88.390	ENSPPYG00000015533	-	96	88.390	Pongo_abelii
ENSFCAG00000028292	SMN	85	59.817	ENSPPYG00000019189	-	99	60.274	Pongo_abelii
ENSFCAG00000028292	SMN	92	82.657	ENSPCAG00000004187	-	100	81.550	Procavia_capensis
ENSFCAG00000028292	SMN	89	71.739	ENSPCOG00000022307	-	90	82.439	Propithecus_coquereli
ENSFCAG00000028292	SMN	97	93.238	ENSPVAG00000005977	-	100	92.150	Pteropus_vampyrus
ENSFCAG00000028292	SMN	92	54.348	ENSPNYG00000014148	smn1	94	55.185	Pundamilia_nyererei
ENSFCAG00000028292	SMN	93	49.638	ENSPNAG00000014007	smn1	82	51.852	Pygocentrus_nattereri
ENSFCAG00000028292	SMN	100	80.412	ENSRNOG00000018067	Smn1	100	80.412	Rattus_norvegicus
ENSFCAG00000028292	SMN	97	89.680	ENSRBIG00000037052	-	99	88.356	Rhinopithecus_bieti
ENSFCAG00000028292	SMN	93	76.587	ENSRBIG00000036775	-	92	76.190	Rhinopithecus_bieti
ENSFCAG00000028292	SMN	97	89.680	ENSRROG00000039399	-	99	88.356	Rhinopithecus_roxellana
ENSFCAG00000028292	SMN	97	76.471	ENSRROG00000031088	-	96	74.386	Rhinopithecus_roxellana
ENSFCAG00000028292	SMN	84	80.876	ENSSBOG00000020112	-	87	81.275	Saimiri_boliviensis_boliviensis
ENSFCAG00000028292	SMN	96	90.000	ENSSBOG00000011665	-	99	86.923	Saimiri_boliviensis_boliviensis
ENSFCAG00000028292	SMN	91	80.000	ENSSHAG00000001499	-	97	69.517	Sarcophilus_harrisii
ENSFCAG00000028292	SMN	92	51.807	ENSSFOG00015015507	smn1	94	53.036	Scleropages_formosus
ENSFCAG00000028292	SMN	93	50.178	ENSSMAG00000007922	smn1	94	50.542	Scophthalmus_maximus
ENSFCAG00000028292	SMN	93	52.518	ENSSDUG00000018533	smn1	94	53.069	Seriola_dumerili
ENSFCAG00000028292	SMN	93	52.518	ENSSLDG00000021135	smn1	94	53.069	Seriola_lalandi_dorsalis
ENSFCAG00000028292	SMN	97	65.556	ENSSPUG00000000373	-	96	63.636	Sphenodon_punctatus
ENSFCAG00000028292	SMN	92	53.333	ENSSPAG00000004345	smn1	94	53.360	Stegastes_partitus
ENSFCAG00000028292	SMN	98	69.412	ENSSSCG00000029127	-	99	69.412	Sus_scrofa
ENSFCAG00000028292	SMN	74	61.682	ENSSSCG00000033865	-	95	62.963	Sus_scrofa
ENSFCAG00000028292	SMN	96	94.656	ENSSSCG00000016970	-	100	91.809	Sus_scrofa
ENSFCAG00000028292	SMN	93	61.798	ENSTGUG00000001548	-	96	62.030	Taeniopygia_guttata
ENSFCAG00000028292	SMN	92	47.426	ENSTRUG00000000736	smn	95	47.080	Takifugu_rubripes
ENSFCAG00000028292	SMN	51	61.654	ENSTNIG00000009892	smn1	95	48.214	Tetraodon_nigroviridis
ENSFCAG00000028292	SMN	75	87.047	ENSTBEG00000002399	-	93	87.047	Tupaia_belangeri
ENSFCAG00000028292	SMN	97	85.106	ENSTTRG00000005080	-	100	85.085	Tursiops_truncatus
ENSFCAG00000028292	SMN	71	92.973	ENSUAMG00000024947	-	71	92.746	Ursus_americanus
ENSFCAG00000028292	SMN	97	93.617	ENSUMAG00000007842	-	75	92.517	Ursus_maritimus
ENSFCAG00000028292	SMN	71	100.000	ENSVPAG00000009887	-	100	77.778	Vicugna_pacos
ENSFCAG00000028292	SMN	100	91.724	ENSVVUG00000006934	-	100	91.724	Vulpes_vulpes
ENSFCAG00000028292	SMN	91	65.432	ENSXETG00000018189	smn2	95	54.196	Xenopus_tropicalis
ENSFCAG00000028292	SMN	91	34.859	ENSXETG00000004912	-	60	37.059	Xenopus_tropicalis
ENSFCAG00000028292	SMN	93	54.098	ENSXMAG00000001521	smn1	94	54.321	Xiphophorus_maculatus